Wall clock time and date at job start Tue Mar 31 2020 12:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42897 * 109.46931 * 2 1 4 4 C 1.35871 * 116.99969 * 179.97438 * 3 2 1 5 5 C 1.38875 * 119.91904 * 359.72537 * 4 3 2 6 6 C 1.37893 * 120.11774 * 179.72832 * 5 4 3 7 7 C 1.39391 * 119.95558 * 0.51810 * 6 5 4 8 8 C 1.48321 * 120.07669 * 179.72796 * 7 6 5 9 9 C 1.39963 * 119.91850 * 130.02829 * 8 7 6 10 10 C 1.38035 * 120.46800 * 179.97438 * 9 8 7 11 11 C 1.38521 * 120.30911 * 0.02562 * 10 9 8 12 12 O 1.35612 * 120.08285 * 180.02562 * 11 10 9 13 13 C 1.42899 * 116.99985 * 0.02562 * 12 11 10 14 14 C 1.41386 * 119.83181 * 359.97438 * 11 10 9 15 15 C 1.41174 * 120.22488 * 179.97438 * 14 11 10 16 16 H 1.08003 * 120.00431 * 24.58622 * 15 14 11 17 17 C 1.39900 * 120.00016 * 204.58922 * 15 14 11 18 18 N 1.30887 * 119.99688 * 17.62393 * 17 15 14 19 19 Si 1.86798 * 119.99981 * 197.62316 * 17 15 14 20 20 H 1.48494 * 109.47211 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.46965 * 119.99913 * 19 17 15 22 22 H 1.48505 * 109.47078 * 239.99700 * 19 17 15 23 23 C 1.38623 * 119.92495 * 309.75026 * 8 7 6 24 24 C 1.39586 * 119.83794 * 359.75225 * 7 6 5 25 25 F 1.35099 * 120.05577 * 179.97438 * 24 7 6 26 26 C 1.38161 * 119.88724 * 0.02562 * 24 7 6 27 27 H 1.08998 * 109.46895 * 60.00791 * 1 2 3 28 28 H 1.09003 * 109.46950 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47695 * 300.00195 * 1 2 3 30 30 H 1.08996 * 109.47246 * 239.99526 * 2 1 3 31 31 H 1.08997 * 109.46477 * 119.99546 * 2 1 3 32 32 H 1.08000 * 119.94326 * 359.97438 * 5 4 3 33 33 H 1.08004 * 120.02510 * 180.27385 * 6 5 4 34 34 H 1.08001 * 119.77063 * 359.97434 * 9 8 7 35 35 H 1.08001 * 119.84554 * 180.02562 * 10 9 8 36 36 H 1.08998 * 109.47203 * 180.02562 * 13 12 11 37 37 H 1.09005 * 109.46825 * 300.00326 * 13 12 11 38 38 H 1.08997 * 109.47035 * 59.99527 * 13 12 11 39 39 H 0.97003 * 119.99332 * 180.02562 * 18 17 15 40 40 H 1.07995 * 120.15879 * 0.02562 * 23 8 7 41 41 H 1.07995 * 119.98309 * 180.02562 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3533 1.5253 0.0005 5 6 4.1977 0.4228 0.0068 6 6 5.5654 0.5988 0.0017 7 6 6.1016 1.8854 0.0012 8 6 7.5723 2.0777 0.0018 9 6 8.1638 2.9413 -0.9273 10 6 9.5313 3.1291 -0.9365 11 6 10.3345 2.4635 -0.0252 12 8 11.6774 2.6519 -0.0380 13 6 12.1970 3.5519 -1.0188 14 6 9.7506 1.5882 0.9191 15 6 10.5614 0.9052 1.8514 16 1 11.5241 1.3092 2.1280 17 6 10.1179 -0.2951 2.4170 18 7 9.1433 -0.9631 1.8539 19 14 10.9167 -0.9443 3.9758 20 1 11.9869 -0.0107 4.4094 21 1 9.8937 -1.0570 5.0463 22 1 11.5049 -2.2819 3.7105 23 6 8.3572 1.4063 0.9264 24 6 5.2512 2.9923 0.0006 25 9 5.7662 4.2412 0.0006 26 6 3.8819 2.8084 0.0010 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8900 32 1 3.7826 -0.5742 0.0117 33 1 6.2207 -0.2598 0.0022 34 1 7.5460 3.4645 -1.6422 35 1 9.9771 3.7982 -1.6577 36 1 13.2809 3.6108 -0.9200 37 1 11.9424 3.1900 -2.0150 38 1 11.7638 4.5410 -0.8700 39 1 8.8356 -1.7952 2.2463 40 1 7.9004 0.7431 1.6460 41 1 3.2225 3.6636 0.0001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241273708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:57 Heat of formation + Delta-G solvation = -82.678000 kcal Electronic energy + Delta-G solvation = -25538.143041 eV Core-core repulsion = 21683.770645 eV Total energy + Delta-G solvation = -3854.372396 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.40710 -39.92816 -38.69566 -37.37866 -35.84000 -33.70501 -32.14116 -30.56996 -30.32077 -29.69570 -27.41173 -26.36930 -25.12429 -23.97040 -22.61491 -21.63517 -20.85043 -19.87160 -18.37701 -17.45724 -16.58503 -16.29266 -16.18301 -15.73164 -15.58094 -15.17591 -15.00172 -14.65605 -14.50830 -14.22139 -13.51784 -13.29260 -13.23245 -12.90390 -12.78479 -12.54680 -12.53293 -12.31301 -11.92585 -11.69065 -11.60386 -11.27243 -11.19346 -11.03544 -10.90748 -10.70090 -10.61468 -10.43356 -9.93217 -9.86478 -9.45588 -9.16946 -8.58108 -8.00859 -7.51003 -6.89845 -6.64061 -4.25127 1.44447 1.53742 2.72752 2.88528 3.10369 3.11183 3.16114 3.18781 3.94181 3.97578 4.48917 4.59722 4.71583 4.76343 4.83869 5.04030 5.12206 5.21022 5.29477 5.39361 5.54738 5.59428 5.65288 5.73694 5.76307 5.83025 5.83966 5.97629 6.13469 6.29416 6.35341 6.37298 6.55640 6.75819 6.82767 6.99863 7.09885 7.27308 7.32612 7.47980 7.65926 7.69807 7.95504 8.16057 8.36964 8.67635 8.83541 9.04102 10.20734 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.012712 B = 0.003993 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.031027 B = 7010.819650 C = 8790.944627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.317 6.317 4 C 0.138 3.862 5 C -0.218 4.218 6 C -0.041 4.041 7 C -0.074 4.074 8 C -0.073 4.073 9 C -0.181 4.181 10 C -0.179 4.179 11 C 0.021 3.979 12 O -0.311 6.311 13 C 0.034 3.966 14 C 0.094 3.906 15 C -0.445 4.445 16 H 0.083 0.917 17 C 0.074 3.926 18 N -0.800 5.800 19 Si 0.907 3.093 20 H -0.260 1.260 21 H -0.273 1.273 22 H -0.275 1.275 23 C -0.121 4.121 24 C 0.137 3.863 25 F -0.129 7.129 26 C -0.194 4.194 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.129 0.871 33 H 0.143 0.857 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.279 0.721 40 H 0.129 0.871 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.819 0.459 -3.231 11.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.232 6.232 4 C 0.093 3.907 5 C -0.236 4.236 6 C -0.059 4.059 7 C -0.075 4.075 8 C -0.073 4.073 9 C -0.201 4.201 10 C -0.198 4.198 11 C -0.024 4.024 12 O -0.225 6.225 13 C -0.062 4.062 14 C 0.091 3.909 15 C -0.474 4.474 16 H 0.101 0.899 17 C -0.142 4.142 18 N -0.426 5.426 19 Si 0.732 3.268 20 H -0.184 1.184 21 H -0.198 1.198 22 H -0.201 1.201 23 C -0.141 4.141 24 C 0.117 3.883 25 F -0.108 7.108 26 C -0.213 4.213 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.147 0.853 33 H 0.160 0.840 34 H 0.110 0.890 35 H 0.117 0.883 36 H 0.100 0.900 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.089 0.911 40 H 0.147 0.853 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.938 0.336 -3.079 11.368 hybrid contribution 0.394 -0.175 0.331 0.544 sum -10.544 0.162 -2.748 10.897 Atomic orbital electron populations 1.21771 0.92946 1.02715 1.03399 1.22770 0.95590 0.82122 1.01653 1.86003 1.19069 1.29185 1.88917 1.18491 0.82094 0.93162 0.96947 1.21187 0.94213 0.97826 1.10417 1.21109 0.93856 0.96748 0.94195 1.19056 0.94074 0.91548 1.02822 1.18190 0.88896 1.00917 0.99286 1.20110 0.93553 1.03878 1.02538 1.20526 0.94374 1.03679 1.01245 1.19353 0.80968 1.03422 0.98610 1.85959 1.20747 1.61961 1.53862 1.22747 0.98611 0.92857 0.91981 1.16954 0.91713 0.91271 0.90933 1.19426 1.03902 1.04365 1.19735 0.89889 1.25859 0.94486 0.96218 0.97662 1.69829 1.23857 1.12989 1.35919 0.86266 0.80038 0.78980 0.81508 1.18374 1.19798 1.20080 1.21159 0.91966 1.01403 0.99568 1.17354 0.90286 0.79603 1.01021 1.91495 1.87358 1.38381 1.93518 1.20022 0.93291 0.96196 1.11808 0.91619 0.90463 0.91592 0.91939 0.91886 0.85314 0.83953 0.89036 0.88346 0.90001 0.94105 0.94159 0.91056 0.85302 0.84591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.28 37.16 0.38 -0.75 16 2 C 0.05 0.53 5.46 37.16 0.20 0.73 16 3 O -0.32 -4.29 10.13 -19.33 -0.20 -4.49 16 4 C 0.14 2.11 6.69 -39.15 -0.26 1.85 16 5 C -0.22 -3.30 9.02 -39.47 -0.36 -3.65 16 6 C -0.04 -0.74 9.49 -39.28 -0.37 -1.11 16 7 C -0.07 -1.49 5.47 -104.82 -0.57 -2.07 16 8 C -0.07 -1.69 5.31 -104.96 -0.56 -2.24 16 9 C -0.18 -4.13 8.85 -39.01 -0.35 -4.47 16 10 C -0.18 -4.08 9.01 -39.55 -0.36 -4.44 16 11 C 0.02 0.52 6.72 -38.28 -0.26 0.27 16 12 O -0.31 -7.22 9.76 -18.53 -0.18 -7.40 16 13 C 0.03 0.59 9.81 101.05 0.99 1.58 16 14 C 0.09 2.51 5.58 -106.72 -0.60 1.92 16 15 C -0.44 -11.92 8.71 -37.85 -0.33 -12.25 16 16 H 0.08 2.23 7.64 -52.48 -0.40 1.83 16 17 C 0.07 1.85 5.14 -17.33 -0.09 1.76 16 18 N -0.80 -20.02 10.96 55.55 0.61 -19.42 16 19 Si 0.91 18.78 29.59 -169.99 -5.03 13.75 16 20 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 21 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 22 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 23 C -0.12 -3.09 8.12 -38.58 -0.31 -3.40 16 24 C 0.14 2.57 7.15 -39.11 -0.28 2.29 16 25 F -0.13 -2.52 15.87 2.25 0.04 -2.49 16 26 C -0.19 -3.15 9.95 -39.41 -0.39 -3.54 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.56 7.67 -51.93 -0.40 0.17 16 31 H 0.06 0.58 7.64 -51.93 -0.40 0.19 16 32 H 0.13 1.58 6.28 -52.49 -0.33 1.25 16 33 H 0.14 2.61 8.04 -52.48 -0.42 2.19 16 34 H 0.09 1.93 7.76 -52.49 -0.41 1.53 16 35 H 0.10 1.96 6.27 -52.49 -0.33 1.63 16 36 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.04 0.66 7.65 -51.93 -0.40 0.26 16 38 H 0.04 0.64 7.66 -51.93 -0.40 0.24 16 39 H 0.28 6.32 8.30 -40.82 -0.34 5.99 16 40 H 0.13 3.35 6.14 -52.49 -0.32 3.03 16 41 H 0.14 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 350.07 15.07 5.28 5.28 Total: -1.00 -28.90 350.07 -8.04 -36.94 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -5.05 Total: 5.35 kcal Atomic # 6 Polarization: -24.03 SS G_CDS: -3.50 Total: -27.53 kcal Atomic # 7 Polarization: -20.02 SS G_CDS: 0.61 Total: -19.42 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: -0.38 Total: -11.89 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.04 Total: -2.49 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.90 -8.04 -36.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241273708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.733 kcal (2) G-P(sol) polarization free energy of solvation -28.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds