Wall clock time and date at job start Tue Mar 31 2020 12:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42897 * 109.46931 * 2 1 4 4 C 1.35871 * 116.99969 * 179.97438 * 3 2 1 5 5 C 1.38875 * 119.91904 * 359.72537 * 4 3 2 6 6 C 1.37893 * 120.11774 * 179.72832 * 5 4 3 7 7 C 1.39391 * 119.95558 * 0.51810 * 6 5 4 8 8 C 1.48321 * 120.07669 * 179.72796 * 7 6 5 9 9 C 1.39963 * 119.91850 * 130.02829 * 8 7 6 10 10 C 1.38035 * 120.46800 * 179.97438 * 9 8 7 11 11 C 1.38521 * 120.30911 * 0.02562 * 10 9 8 12 12 O 1.35612 * 120.08285 * 180.02562 * 11 10 9 13 13 C 1.42899 * 116.99985 * 0.02562 * 12 11 10 14 14 C 1.41386 * 119.83181 * 359.97438 * 11 10 9 15 15 C 1.41174 * 120.22488 * 179.97438 * 14 11 10 16 16 H 1.08003 * 120.00431 * 24.58622 * 15 14 11 17 17 C 1.39900 * 120.00016 * 204.58922 * 15 14 11 18 18 N 1.30887 * 119.99688 * 17.62393 * 17 15 14 19 19 Si 1.86798 * 119.99981 * 197.62316 * 17 15 14 20 20 H 1.48494 * 109.47211 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.46965 * 119.99913 * 19 17 15 22 22 H 1.48505 * 109.47078 * 239.99700 * 19 17 15 23 23 C 1.38623 * 119.92495 * 309.75026 * 8 7 6 24 24 C 1.39586 * 119.83794 * 359.75225 * 7 6 5 25 25 F 1.35099 * 120.05577 * 179.97438 * 24 7 6 26 26 C 1.38161 * 119.88724 * 0.02562 * 24 7 6 27 27 H 1.08998 * 109.46895 * 60.00791 * 1 2 3 28 28 H 1.09003 * 109.46950 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47695 * 300.00195 * 1 2 3 30 30 H 1.08996 * 109.47246 * 239.99526 * 2 1 3 31 31 H 1.08997 * 109.46477 * 119.99546 * 2 1 3 32 32 H 1.08000 * 119.94326 * 359.97438 * 5 4 3 33 33 H 1.08004 * 120.02510 * 180.27385 * 6 5 4 34 34 H 1.08001 * 119.77063 * 359.97434 * 9 8 7 35 35 H 1.08001 * 119.84554 * 180.02562 * 10 9 8 36 36 H 1.08998 * 109.47203 * 180.02562 * 13 12 11 37 37 H 1.09005 * 109.46825 * 300.00326 * 13 12 11 38 38 H 1.08997 * 109.47035 * 59.99527 * 13 12 11 39 39 H 0.97003 * 119.99332 * 180.02562 * 18 17 15 40 40 H 1.07995 * 120.15879 * 0.02562 * 23 8 7 41 41 H 1.07995 * 119.98309 * 180.02562 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3533 1.5253 0.0005 5 6 4.1977 0.4228 0.0068 6 6 5.5654 0.5988 0.0017 7 6 6.1016 1.8854 0.0012 8 6 7.5723 2.0777 0.0018 9 6 8.1638 2.9413 -0.9273 10 6 9.5313 3.1291 -0.9365 11 6 10.3345 2.4635 -0.0252 12 8 11.6774 2.6519 -0.0380 13 6 12.1970 3.5519 -1.0188 14 6 9.7506 1.5882 0.9191 15 6 10.5614 0.9052 1.8514 16 1 11.5241 1.3092 2.1280 17 6 10.1179 -0.2951 2.4170 18 7 9.1433 -0.9631 1.8539 19 14 10.9167 -0.9443 3.9758 20 1 11.9869 -0.0107 4.4094 21 1 9.8937 -1.0570 5.0463 22 1 11.5049 -2.2819 3.7105 23 6 8.3572 1.4063 0.9264 24 6 5.2512 2.9923 0.0006 25 9 5.7662 4.2412 0.0006 26 6 3.8819 2.8084 0.0010 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8900 32 1 3.7826 -0.5742 0.0117 33 1 6.2207 -0.2598 0.0022 34 1 7.5460 3.4645 -1.6422 35 1 9.9771 3.7982 -1.6577 36 1 13.2809 3.6108 -0.9200 37 1 11.9424 3.1900 -2.0150 38 1 11.7638 4.5410 -0.8700 39 1 8.8356 -1.7952 2.2463 40 1 7.9004 0.7431 1.6460 41 1 3.2225 3.6636 0.0001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241273708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:57 Heat of formation + Delta-G solvation = -96.840624 kcal Electronic energy + Delta-G solvation = -25538.757178 eV Core-core repulsion = 21683.770645 eV Total energy + Delta-G solvation = -3854.986533 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.88296 -41.13337 -40.41164 -38.75405 -37.46288 -35.53685 -33.17982 -32.02327 -31.62139 -31.40592 -28.93524 -27.93807 -26.93598 -24.93375 -24.04171 -23.04335 -22.47291 -21.49317 -19.61837 -19.21325 -18.32849 -17.65964 -17.30990 -17.11962 -16.96494 -16.72354 -16.51882 -16.24426 -16.11877 -15.53025 -14.99369 -14.84615 -14.48109 -14.33497 -14.12486 -13.97232 -13.79750 -13.47899 -13.30708 -13.01898 -12.95285 -12.83592 -12.78253 -12.49994 -12.45966 -12.09827 -11.91228 -11.73757 -11.68698 -11.42263 -11.22911 -11.01195 -9.91368 -9.47923 -9.37015 -8.70442 -8.40644 -6.21186 0.05001 0.17505 0.93758 1.08599 1.39709 1.49684 1.54346 2.08035 2.24673 2.53698 2.76881 2.90599 3.39897 3.61392 3.77016 3.86671 3.98697 4.09974 4.17468 4.26028 4.31524 4.38928 4.41511 4.45170 4.48603 4.57548 4.73904 4.87854 4.93590 4.98326 5.01477 5.03194 5.15704 5.20166 5.29679 5.33360 5.44085 5.51221 5.64356 5.81454 5.86322 6.10289 6.28781 6.35970 6.48833 6.78515 6.91719 7.21276 8.38020 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.012712 B = 0.003993 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.031027 B = 7010.819650 C = 8790.944627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.040 3.960 3 O -0.321 6.321 4 C 0.152 3.848 5 C -0.205 4.205 6 C -0.046 4.046 7 C -0.107 4.107 8 C -0.072 4.072 9 C -0.186 4.186 10 C -0.179 4.179 11 C 0.004 3.996 12 O -0.338 6.338 13 C 0.025 3.975 14 C 0.059 3.941 15 C -0.483 4.483 16 H 0.068 0.932 17 C 0.038 3.962 18 N -0.822 5.822 19 Si 0.977 3.023 20 H -0.265 1.265 21 H -0.262 1.262 22 H -0.264 1.264 23 C -0.140 4.140 24 C 0.126 3.874 25 F -0.139 7.139 26 C -0.191 4.191 27 H 0.065 0.935 28 H 0.101 0.899 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.162 0.838 33 H 0.131 0.869 34 H 0.108 0.892 35 H 0.128 0.872 36 H 0.112 0.888 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.288 0.712 40 H 0.115 0.885 41 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.686 -0.046 -3.529 13.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.035 4.035 3 O -0.235 6.235 4 C 0.106 3.894 5 C -0.223 4.223 6 C -0.064 4.064 7 C -0.108 4.108 8 C -0.073 4.073 9 C -0.205 4.205 10 C -0.198 4.198 11 C -0.041 4.041 12 O -0.253 6.253 13 C -0.070 4.070 14 C 0.056 3.944 15 C -0.512 4.512 16 H 0.086 0.914 17 C -0.177 4.177 18 N -0.449 5.449 19 Si 0.798 3.202 20 H -0.189 1.189 21 H -0.187 1.187 22 H -0.189 1.189 23 C -0.160 4.160 24 C 0.107 3.893 25 F -0.117 7.117 26 C -0.210 4.210 27 H 0.084 0.916 28 H 0.119 0.881 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.179 0.821 33 H 0.149 0.851 34 H 0.126 0.874 35 H 0.146 0.854 36 H 0.131 0.869 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.099 0.901 40 H 0.133 0.867 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -12.822 -0.163 -3.400 13.266 hybrid contribution 0.821 0.002 0.305 0.876 sum -12.000 -0.161 -3.095 12.394 Atomic orbital electron populations 1.21805 0.91066 1.04276 1.03311 1.23182 0.97145 0.80429 1.02701 1.86036 1.17527 1.31755 1.88220 1.18535 0.83151 0.92702 0.95015 1.21416 0.92781 0.99534 1.08580 1.21051 0.95128 0.95535 0.94734 1.19006 0.92645 0.93115 1.06046 1.18464 0.90784 0.99809 0.98205 1.20431 0.93921 1.03649 1.02493 1.20837 0.94339 1.03490 1.01126 1.19512 0.82122 1.03603 0.98837 1.85904 1.19899 1.63537 1.55922 1.23099 1.00334 0.92329 0.91194 1.17369 0.92591 0.92445 0.91953 1.19511 1.03957 1.05933 1.21837 0.91393 1.26608 0.95058 0.95788 1.00224 1.69862 1.24596 1.13440 1.37012 0.85232 0.79056 0.78371 0.77505 1.18861 1.18687 1.18905 1.21070 0.91927 1.02503 1.00469 1.17441 0.91129 0.78820 1.01921 1.91462 1.87677 1.38843 1.93746 1.20197 0.92348 0.97589 1.10882 0.91629 0.88078 0.91791 0.90698 0.90973 0.82084 0.85092 0.87356 0.85380 0.86930 0.93093 0.92963 0.90126 0.86747 0.82575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 10.28 71.98 0.74 -0.97 16 2 C 0.04 0.64 5.46 71.98 0.39 1.04 16 3 O -0.32 -7.68 10.13 -92.10 -0.93 -8.62 16 4 C 0.15 4.28 6.69 22.55 0.15 4.43 16 5 C -0.20 -5.79 9.02 22.34 0.20 -5.58 16 6 C -0.05 -1.66 9.49 22.47 0.21 -1.45 16 7 C -0.11 -4.39 5.47 -19.99 -0.11 -4.50 16 8 C -0.07 -3.47 5.31 -20.08 -0.11 -3.58 16 9 C -0.19 -8.55 8.85 22.64 0.20 -8.35 16 10 C -0.18 -8.21 9.01 22.29 0.20 -8.01 16 11 C 0.00 0.20 6.72 23.11 0.16 0.36 16 12 O -0.34 -16.04 9.76 -89.24 -0.87 -16.91 16 13 C 0.03 0.84 9.81 113.37 1.11 1.96 16 14 C 0.06 3.31 5.58 -21.23 -0.12 3.19 16 15 C -0.48 -27.24 8.71 23.39 0.20 -27.04 16 16 H 0.07 3.88 7.64 -2.91 -0.02 3.85 16 17 C 0.04 1.93 5.14 85.24 0.44 2.36 16 18 N -0.82 -42.54 10.96 21.82 0.24 -42.30 16 19 Si 0.98 39.35 29.59 68.60 2.03 41.38 16 20 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 21 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 22 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 23 C -0.14 -7.49 8.12 22.92 0.19 -7.30 16 24 C 0.13 4.70 7.15 22.58 0.16 4.86 16 25 F -0.14 -5.42 15.87 44.97 0.71 -4.71 16 26 C -0.19 -5.89 9.95 22.38 0.22 -5.66 16 27 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 28 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.07 1.06 7.67 -2.39 -0.02 1.04 16 31 H 0.07 1.07 7.64 -2.39 -0.02 1.05 16 32 H 0.16 3.43 6.28 -2.91 -0.02 3.41 16 33 H 0.13 4.95 8.04 -2.91 -0.02 4.93 16 34 H 0.11 4.54 7.76 -2.91 -0.02 4.52 16 35 H 0.13 4.94 6.27 -2.91 -0.02 4.93 16 36 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 37 H 0.05 1.58 7.65 -2.38 -0.02 1.56 16 38 H 0.05 1.60 7.66 -2.39 -0.02 1.58 16 39 H 0.29 13.32 8.30 -92.71 -0.77 12.55 16 40 H 0.11 6.31 6.14 -2.91 -0.02 6.29 16 41 H 0.16 4.11 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -65.63 350.07 6.48 -59.15 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: 1.05 Total: 26.25 kcal Atomic # 6 Polarization: -58.49 SS G_CDS: 4.24 Total: -54.25 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: 0.24 Total: -42.30 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -1.80 Total: -25.52 kcal Atomic # 9 Polarization: -5.42 SS G_CDS: 0.71 Total: -4.71 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.38 kcal Total: -65.63 6.48 -59.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241273708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.693 kcal (2) G-P(sol) polarization free energy of solvation -65.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds