Wall clock time and date at job start Tue Mar 31 2020 11:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47131 * 2 1 4 4 C 1.38354 * 119.85060 * 269.72616 * 3 2 1 5 5 C 1.37974 * 120.14045 * 179.72645 * 4 3 2 6 6 C 1.39544 * 119.85059 * 0.54236 * 5 4 3 7 7 C 1.47872 * 120.14067 * 179.70637 * 6 5 4 8 8 N 1.30222 * 125.46983 * 359.73833 * 7 6 5 9 9 C 1.31311 * 117.04158 * 179.84039 * 8 7 6 10 10 C 1.50702 * 122.07579 * 180.20269 * 9 8 7 11 11 N 1.46503 * 109.46698 * 275.27173 * 10 9 8 12 12 C 1.36937 * 119.99840 * 270.00234 * 11 10 9 13 13 H 1.08001 * 119.99843 * 146.02091 * 12 11 10 14 14 C 1.38814 * 120.00345 * 326.01233 * 12 11 10 15 15 N 1.31623 * 119.99770 * 336.68272 * 14 12 11 16 16 Si 1.86798 * 120.00073 * 156.67927 * 14 12 11 17 17 H 1.48491 * 109.47113 * 0.02562 * 16 14 12 18 18 H 1.48492 * 109.46987 * 120.00473 * 16 14 12 19 19 H 1.48502 * 109.46974 * 240.00246 * 16 14 12 20 20 C 1.46502 * 119.99911 * 90.00126 * 11 10 9 21 21 C 1.53001 * 109.46725 * 89.47481 * 20 11 10 22 22 C 1.33728 * 115.84433 * 0.45738 * 9 8 7 23 23 S 1.76179 * 125.47329 * 180.02562 * 7 6 5 24 24 C 1.39548 * 119.72194 * 359.73482 * 6 5 4 25 25 C 1.37967 * 119.85297 * 359.97438 * 24 6 5 26 26 H 1.08997 * 109.47225 * 300.00163 * 1 2 3 27 27 H 1.08998 * 109.47123 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47144 * 60.00123 * 1 2 3 29 29 H 1.09001 * 109.46743 * 119.99561 * 2 1 3 30 30 H 1.09000 * 109.46888 * 239.99461 * 2 1 3 31 31 H 1.07996 * 119.93075 * 359.97438 * 4 3 2 32 32 H 1.07998 * 120.07087 * 180.27394 * 5 4 3 33 33 H 1.08993 * 109.47065 * 35.27301 * 10 9 8 34 34 H 1.09000 * 109.46919 * 155.27267 * 10 9 8 35 35 H 0.96998 * 119.99985 * 179.97438 * 15 14 12 36 36 H 1.08997 * 109.47111 * 209.47557 * 20 11 10 37 37 H 1.09002 * 109.46923 * 329.47928 * 20 11 10 38 38 H 1.09006 * 109.46850 * 179.97438 * 21 20 11 39 39 H 1.08997 * 109.47387 * 299.99906 * 21 20 11 40 40 H 1.09001 * 109.47512 * 60.00255 * 21 20 11 41 41 H 1.08003 * 125.88686 * 179.76155 * 22 9 8 42 42 H 1.08001 * 120.07798 * 179.97438 * 24 6 5 43 43 H 1.07996 * 119.92854 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2673 2.0682 -1.2000 5 6 2.7219 3.3709 -1.2070 6 6 2.9554 4.0315 -0.0002 7 6 3.4487 5.4255 -0.0003 8 7 3.7057 6.1361 -1.0608 9 6 4.1351 7.3620 -0.8684 10 6 4.4623 8.2845 -2.0143 11 7 5.8345 8.0369 -2.4640 12 6 6.8737 8.7332 -1.9068 13 1 7.8352 8.2581 -1.7792 14 6 6.6914 10.0496 -1.5060 15 7 5.7329 10.7743 -2.0431 16 14 7.8064 10.7926 -0.2044 17 1 8.7970 9.7780 0.2366 18 1 8.5188 11.9647 -0.7733 19 1 6.9900 11.2259 0.9580 20 6 6.0948 7.0444 -3.5097 21 6 6.0271 7.7191 -4.8812 22 6 4.2691 7.7392 0.4075 23 16 3.7901 6.3893 1.4345 24 6 2.7219 3.3710 1.2066 25 6 2.2616 2.0704 1.1998 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 2.0907 1.5541 -2.1332 32 1 2.9007 3.8766 -2.1443 33 1 3.7716 8.1008 -2.8372 34 1 4.3688 9.3195 -1.6856 35 1 5.6053 11.6941 -1.7628 36 1 7.0861 6.6151 -3.3644 37 1 5.3454 6.2548 -3.4558 38 1 6.2213 6.9807 -5.6593 39 1 5.0358 8.1484 -5.0265 40 1 6.7765 8.5088 -4.9352 41 1 4.6115 8.7047 0.7497 42 1 2.9010 3.8767 2.1440 43 1 2.0809 1.5579 2.1331 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068958536.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:10 Heat of formation + Delta-G solvation = 74.833190 kcal Electronic energy + Delta-G solvation = -23246.559007 eV Core-core repulsion = 19997.522736 eV Total energy + Delta-G solvation = -3249.036271 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.66354 -38.77196 -35.77213 -34.46630 -31.85933 -31.20193 -31.03167 -29.32931 -28.19768 -26.22107 -25.01419 -23.58761 -22.82699 -22.57325 -20.89325 -20.13821 -18.68386 -17.70987 -16.59392 -16.04729 -15.46208 -15.38194 -14.78723 -14.45544 -14.19303 -13.87105 -13.82506 -13.66893 -13.49133 -13.41168 -12.95656 -12.70119 -12.35853 -12.27163 -12.01487 -11.91107 -11.44556 -11.23682 -11.14735 -11.11949 -10.95616 -10.83483 -10.71099 -10.37953 -10.13364 -9.99801 -9.77350 -9.30650 -9.19084 -8.99911 -8.70869 -8.57426 -7.67067 -6.71679 -5.89019 -3.38081 0.59182 1.37279 1.80029 1.84029 2.26914 3.28291 3.39027 3.41650 3.44273 3.90914 4.31372 4.43721 4.58875 4.69150 4.94028 5.02859 5.12165 5.22219 5.32071 5.32338 5.44231 5.56636 5.61364 5.66309 5.77183 5.87334 5.96194 6.01126 6.04883 6.17742 6.20093 6.34649 6.45995 6.51024 6.52091 6.54944 6.72555 6.83372 6.90159 6.97477 7.01448 7.28819 7.51022 7.75980 8.36208 8.45341 9.09098 9.73099 10.30870 11.12420 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.020048 B = 0.003322 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.326514 B = 8427.244366 C = 9377.459402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.079 4.079 4 C -0.119 4.119 5 C -0.073 4.073 6 C -0.011 4.011 7 C 0.092 3.908 8 N -0.443 5.443 9 C 0.069 3.931 10 C 0.206 3.794 11 N -0.571 5.571 12 C -0.249 4.249 13 H 0.062 0.938 14 C 0.009 3.991 15 N -0.884 5.884 16 Si 0.891 3.109 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.287 1.287 20 C 0.142 3.858 21 C -0.160 4.160 22 C -0.217 4.217 23 S 0.021 5.979 24 C -0.100 4.100 25 C -0.118 4.118 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.125 0.875 32 H 0.136 0.864 33 H 0.043 0.957 34 H 0.116 0.884 35 H 0.256 0.744 36 H 0.039 0.961 37 H 0.041 0.959 38 H 0.031 0.969 39 H 0.044 0.956 40 H 0.054 0.946 41 H 0.173 0.827 42 H 0.124 0.876 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.454 -17.118 5.271 20.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.080 4.080 4 C -0.137 4.137 5 C -0.094 4.094 6 C -0.015 4.015 7 C -0.183 4.183 8 N -0.157 5.157 9 C -0.065 4.065 10 C 0.076 3.924 11 N -0.290 5.290 12 C -0.379 4.379 13 H 0.080 0.920 14 C -0.191 4.191 15 N -0.526 5.526 16 Si 0.720 3.280 17 H -0.200 1.200 18 H -0.215 1.215 19 H -0.213 1.213 20 C 0.017 3.983 21 C -0.220 4.220 22 C -0.356 4.356 23 S 0.275 5.725 24 C -0.120 4.120 25 C -0.136 4.136 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.143 0.857 32 H 0.154 0.846 33 H 0.061 0.939 34 H 0.133 0.867 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.050 0.950 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.190 0.810 42 H 0.141 0.859 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.559 -17.235 5.845 20.557 hybrid contribution 0.940 1.224 0.210 1.557 sum -8.619 -16.011 6.055 19.165 Atomic orbital electron populations 1.21752 0.94715 1.01595 1.02379 1.20552 0.96175 0.92640 1.02853 1.19987 0.98647 0.96215 0.93190 1.20982 1.00487 0.94633 0.97616 1.21301 0.96307 0.93952 0.97869 1.17878 1.00507 0.89057 0.94085 1.25682 1.05127 0.97540 0.89982 1.66456 1.13013 1.06016 1.30209 1.21896 0.96514 0.91155 0.96902 1.19822 0.85534 0.97542 0.89475 1.43814 1.02724 1.43460 1.38998 1.19151 0.92428 0.92189 1.34168 0.91992 1.25059 0.98365 0.95452 1.00239 1.69973 1.34184 1.07672 1.40794 0.86401 0.80537 0.79030 0.82026 1.20050 1.21507 1.21318 1.20890 0.98314 0.91399 0.87742 1.22243 1.01550 1.00253 0.97956 1.26829 1.11074 1.02814 0.94918 1.84452 1.63963 1.09561 1.14503 1.21145 0.99148 0.94952 0.96798 1.20828 1.00714 0.94381 0.97634 0.92526 0.92492 0.92435 0.91060 0.90973 0.85723 0.84632 0.93869 0.86670 0.93394 0.94233 0.94069 0.94992 0.93722 0.92736 0.80977 0.85852 0.85810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.89 37.16 0.37 -0.63 16 2 C -0.08 -0.63 6.06 -27.88 -0.17 -0.80 16 3 C -0.08 -0.80 5.14 -104.54 -0.54 -1.34 16 4 C -0.12 -1.33 9.68 -39.64 -0.38 -1.71 16 5 C -0.07 -1.01 9.68 -39.19 -0.38 -1.39 16 6 C -0.01 -0.17 5.87 -104.98 -0.62 -0.79 16 7 C 0.09 1.64 7.35 -14.29 -0.11 1.54 16 8 N -0.44 -9.03 10.11 -7.55 -0.08 -9.10 16 9 C 0.07 1.50 6.27 -84.40 -0.53 0.97 16 10 C 0.21 4.91 5.71 -5.19 -0.03 4.88 16 11 N -0.57 -14.23 2.43 -174.61 -0.43 -14.65 16 12 C -0.25 -6.70 9.48 -15.06 -0.14 -6.84 16 13 H 0.06 1.70 7.93 -52.49 -0.42 1.28 16 14 C 0.01 0.24 4.94 -17.43 -0.09 0.15 16 15 N -0.88 -24.36 11.34 55.49 0.63 -23.73 16 16 Si 0.89 21.01 29.61 -169.99 -5.03 15.98 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 20 C 0.14 3.14 6.39 -4.04 -0.03 3.12 16 21 C -0.16 -3.28 10.24 37.16 0.38 -2.90 16 22 C -0.22 -4.41 11.06 29.15 0.32 -4.09 16 23 S 0.02 0.36 22.40 -107.50 -2.41 -2.05 16 24 C -0.10 -1.26 9.61 -39.19 -0.38 -1.64 16 25 C -0.12 -1.24 9.68 -39.64 -0.38 -1.62 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 30 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 31 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 32 H 0.14 1.97 7.82 -52.49 -0.41 1.56 16 33 H 0.04 1.01 8.07 -51.93 -0.42 0.59 16 34 H 0.12 2.99 5.27 -51.93 -0.27 2.72 16 35 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 36 H 0.04 0.86 8.03 -51.93 -0.42 0.45 16 37 H 0.04 0.87 8.08 -51.93 -0.42 0.45 16 38 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 41 H 0.17 3.52 8.06 -52.48 -0.42 3.10 16 42 H 0.12 1.43 7.30 -52.49 -0.38 1.05 16 43 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 374.28 15.07 5.64 5.64 Total: -1.00 -28.69 374.28 -10.89 -39.58 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -6.52 Total: 1.43 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -2.69 Total: -13.09 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: 0.13 Total: -47.49 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Atomic # 16 Polarization: 0.36 SS G_CDS: -2.41 Total: -2.05 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -28.69 -10.89 -39.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068958536.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.411 kcal (2) G-P(sol) polarization free energy of solvation -28.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds