Wall clock time and date at job start Tue Mar 31 2020 11:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47232 * 2 1 4 4 C 1.50699 * 109.47034 * 239.99687 * 2 1 3 5 5 C 1.38351 * 119.85695 * 59.72952 * 4 2 1 6 6 C 1.37968 * 120.14286 * 179.72176 * 5 4 2 7 7 C 1.39545 * 119.85396 * 0.54850 * 6 5 4 8 8 C 1.47872 * 120.14111 * 179.70647 * 7 6 5 9 9 N 1.30219 * 125.47491 * 359.73301 * 8 7 6 10 10 C 1.31302 * 117.04625 * 179.83978 * 9 8 7 11 11 C 1.50699 * 122.07826 * 180.19519 * 10 9 8 12 12 N 1.46493 * 109.47327 * 275.27884 * 11 10 9 13 13 C 1.46505 * 120.00304 * 269.99821 * 12 11 10 14 14 C 1.36938 * 120.00205 * 89.99909 * 12 11 10 15 15 H 1.08000 * 119.99867 * 20.37310 * 14 12 11 16 16 C 1.38812 * 120.00600 * 200.37144 * 14 12 11 17 17 N 1.31625 * 119.99599 * 14.98076 * 16 14 12 18 18 Si 1.86794 * 120.00399 * 194.98143 * 16 14 12 19 19 H 1.48499 * 109.47246 * 85.00181 * 18 16 14 20 20 H 1.48501 * 109.47108 * 205.00107 * 18 16 14 21 21 H 1.48502 * 109.47026 * 325.00476 * 18 16 14 22 22 C 1.33727 * 115.84571 * 0.46182 * 10 9 8 23 23 S 1.76179 * 125.47089 * 180.02562 * 8 7 6 24 24 C 1.39547 * 119.71862 * 359.72292 * 7 6 5 25 25 C 1.37968 * 119.85365 * 0.02562 * 24 7 6 26 26 H 1.08996 * 109.47254 * 60.00439 * 1 2 3 27 27 H 1.09005 * 109.46933 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47139 * 300.00275 * 1 2 3 29 29 H 1.09009 * 109.46812 * 120.00001 * 2 1 3 30 30 H 1.08997 * 109.47409 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.46592 * 300.00118 * 3 2 1 32 32 H 1.08998 * 109.47283 * 59.99814 * 3 2 1 33 33 H 1.07995 * 119.92765 * 359.97438 * 5 4 2 34 34 H 1.08001 * 120.06965 * 180.27030 * 6 5 4 35 35 H 1.09000 * 109.47111 * 35.27914 * 11 10 9 36 36 H 1.09000 * 109.46892 * 155.27532 * 11 10 9 37 37 H 1.08999 * 109.46785 * 95.09695 * 13 12 11 38 38 H 1.08999 * 109.47415 * 215.09757 * 13 12 11 39 39 H 1.09005 * 109.46522 * 335.09701 * 13 12 11 40 40 H 0.97000 * 120.00085 * 180.02562 * 17 16 14 41 41 H 1.07999 * 125.89465 * 179.75917 * 22 10 9 42 42 H 1.08006 * 120.07581 * 179.97438 * 24 7 6 43 43 H 1.08000 * 119.92897 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 6 1.6917 -0.2386 -2.4856 6 6 2.1530 -0.8811 -3.6160 7 6 2.9554 -2.0159 -3.4913 8 6 3.4479 -2.7133 -4.6987 9 7 3.1956 -2.3657 -5.9280 10 6 3.7224 -3.1041 -6.8774 11 6 3.5077 -2.8023 -8.3381 12 7 2.2468 -3.4026 -8.7806 13 6 2.2322 -4.7677 -9.3125 14 6 1.0817 -2.6880 -8.6972 15 1 1.1128 -1.6107 -8.6276 16 6 -0.1394 -3.3480 -8.7020 17 7 -0.1866 -4.6463 -8.4902 18 14 -1.7157 -2.3940 -9.0093 19 1 -1.9402 -2.2665 -10.4716 20 1 -2.8588 -3.1153 -8.3941 21 1 -1.6014 -1.0417 -8.4063 22 6 4.4567 -4.1438 -6.4675 23 16 4.4645 -4.1522 -4.7050 24 6 3.2907 -2.4901 -2.2225 25 6 2.8272 -1.8353 -1.1000 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5139 0.8901 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9562 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.0666 0.6370 -2.5806 34 1 1.8899 -0.5091 -4.5952 35 1 3.4670 -1.7229 -8.4840 36 1 4.3312 -3.2167 -8.9196 37 1 1.9816 -5.4660 -8.5140 38 1 1.4883 -4.8406 -10.1058 39 1 3.2160 -5.0118 -9.7133 40 1 -1.0398 -5.1077 -8.4939 41 1 4.9587 -4.8554 -7.1062 42 1 3.9111 -3.3682 -2.1193 43 1 3.0857 -2.2015 -0.1174 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068971728.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:19 Heat of formation + Delta-G solvation = 64.540067 kcal Electronic energy + Delta-G solvation = -23271.227440 eV Core-core repulsion = 20021.744826 eV Total energy + Delta-G solvation = -3249.482614 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 11.09 seconds Orbital eigenvalues (eV) -40.91827 -40.16445 -37.35509 -36.37892 -33.64167 -32.24317 -31.95087 -30.09742 -28.36526 -27.93933 -27.61893 -25.94654 -23.98208 -23.72261 -22.57232 -20.91294 -20.14889 -18.89302 -18.77682 -17.41072 -16.89935 -16.62275 -16.06450 -15.90479 -15.62201 -15.26324 -14.94540 -14.84782 -14.78472 -14.37754 -14.35875 -14.14427 -13.71841 -13.39037 -13.33869 -13.21731 -12.93003 -12.81247 -12.62750 -12.35895 -12.31246 -12.20022 -12.04965 -12.00442 -11.84077 -11.66933 -11.51265 -10.68719 -10.59531 -10.55229 -10.04530 -9.94004 -9.01465 -8.85828 -7.86512 -5.30980 -0.65448 0.41707 0.42656 0.61025 0.77890 1.41748 1.43068 1.51264 2.00092 2.50416 2.83663 3.07305 3.30390 3.70604 3.79242 3.84841 4.01753 4.06906 4.21141 4.33963 4.35404 4.43158 4.45889 4.53030 4.56589 4.77408 4.80015 4.85114 4.91566 4.97642 4.99863 5.03774 5.10071 5.13052 5.24827 5.30546 5.35081 5.42966 5.48409 5.52642 5.59807 5.68601 5.69154 5.96892 6.27790 6.96021 7.12667 7.81353 8.22702 9.17013 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.011988 B = 0.004013 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.018786 B = 6974.900787 C = 8679.143228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.054 4.054 3 C -0.144 4.144 4 C -0.062 4.062 5 C -0.117 4.117 6 C -0.089 4.089 7 C -0.048 4.048 8 C 0.091 3.909 9 N -0.476 5.476 10 C 0.048 3.952 11 C 0.210 3.790 12 N -0.601 5.601 13 C 0.176 3.824 14 C -0.249 4.249 15 H 0.066 0.934 16 C -0.052 4.052 17 N -0.938 5.938 18 Si 0.964 3.036 19 H -0.279 1.279 20 H -0.296 1.296 21 H -0.274 1.274 22 C -0.251 4.251 23 S 0.090 5.910 24 C -0.098 4.098 25 C -0.113 4.113 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.138 0.862 34 H 0.110 0.890 35 H 0.055 0.945 36 H 0.091 0.909 37 H -0.002 1.002 38 H 0.022 0.978 39 H 0.041 0.959 40 H 0.246 0.754 41 H 0.193 0.807 42 H 0.136 0.864 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.001 6.669 18.267 21.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.072 4.072 3 C -0.201 4.201 4 C -0.063 4.063 5 C -0.135 4.135 6 C -0.111 4.111 7 C -0.052 4.052 8 C -0.184 4.184 9 N -0.190 5.190 10 C -0.087 4.087 11 C 0.081 3.919 12 N -0.322 5.322 13 C 0.032 3.968 14 C -0.379 4.379 15 H 0.083 0.917 16 C -0.247 4.247 17 N -0.585 5.585 18 Si 0.792 3.208 19 H -0.205 1.205 20 H -0.222 1.222 21 H -0.199 1.199 22 C -0.391 4.391 23 S 0.346 5.654 24 C -0.118 4.118 25 C -0.131 4.131 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.094 0.906 29 H 0.115 0.885 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.156 0.844 34 H 0.128 0.872 35 H 0.074 0.926 36 H 0.109 0.891 37 H 0.017 0.983 38 H 0.040 0.960 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.210 0.790 42 H 0.154 0.846 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 9.033 6.310 18.817 21.806 hybrid contribution -1.293 0.088 -1.534 2.008 sum 7.739 6.397 17.283 19.988 Atomic orbital electron populations 1.21889 0.94045 1.01929 1.02547 1.20219 0.96104 0.96448 0.94412 1.21864 1.01198 0.94510 1.02547 1.20347 0.95765 0.95090 0.95087 1.21085 1.00417 1.00664 0.91367 1.21269 0.95926 0.94364 0.99543 1.18066 1.01040 0.96627 0.89497 1.26294 1.00710 0.97018 0.94336 1.66317 1.21515 1.32044 0.99096 1.21633 0.94680 0.93214 0.99182 1.19801 0.88767 0.98025 0.85297 1.44335 1.03600 1.14217 1.70061 1.20602 0.96224 0.84364 0.95646 1.19445 0.84629 0.90402 1.43436 0.91664 1.25689 1.00653 0.96812 1.01512 1.70257 1.24467 1.08971 1.54764 0.85324 0.79436 0.78029 0.77972 1.20538 1.22242 1.19934 1.27001 1.09915 1.05105 0.97057 1.84034 1.49117 1.28060 1.04185 1.21306 0.99818 1.00086 0.90638 1.21263 0.97720 0.95153 0.98962 0.93028 0.93141 0.90626 0.88526 0.92582 0.92917 0.90768 0.84377 0.87184 0.92624 0.89108 0.98330 0.95964 0.94087 0.94463 0.78973 0.84612 0.82248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.00 71.98 0.65 -1.47 16 2 C -0.05 -0.76 3.09 -11.54 -0.04 -0.80 16 3 C -0.14 -1.84 9.01 71.98 0.65 -1.19 16 4 C -0.06 -1.26 4.79 -19.81 -0.09 -1.36 16 5 C -0.12 -2.95 8.69 22.23 0.19 -2.76 16 6 C -0.09 -2.92 9.68 22.52 0.22 -2.71 16 7 C -0.05 -1.60 5.87 -20.10 -0.12 -1.72 16 8 C 0.09 3.50 7.35 87.49 0.64 4.14 16 9 N -0.48 -21.26 10.11 -177.79 -1.80 -23.06 16 10 C 0.05 2.02 6.27 41.61 0.26 2.28 16 11 C 0.21 9.06 6.12 85.63 0.52 9.58 16 12 N -0.60 -31.32 2.91 -731.31 -2.13 -33.45 16 13 C 0.18 8.86 9.02 127.77 1.15 10.01 16 14 C -0.25 -14.39 9.68 84.03 0.81 -13.58 16 15 H 0.07 3.78 7.86 -2.91 -0.02 3.76 16 16 C -0.05 -3.05 5.06 84.86 0.43 -2.62 16 17 N -0.94 -57.73 10.67 21.65 0.23 -57.50 16 18 Si 0.96 47.46 29.58 68.60 2.03 49.49 16 19 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 20 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 21 H -0.27 -13.11 7.11 99.48 0.71 -12.41 16 22 C -0.25 -9.02 11.06 66.79 0.74 -8.28 16 23 S 0.09 2.88 22.40 -56.49 -1.27 1.61 16 24 C -0.10 -2.50 9.61 22.52 0.22 -2.28 16 25 C -0.11 -2.28 9.65 22.23 0.21 -2.06 16 26 H 0.05 0.82 7.36 -2.39 -0.02 0.80 16 27 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 28 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.10 1.05 7.87 -2.38 -0.02 1.03 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.05 0.74 7.39 -2.38 -0.02 0.72 16 32 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.14 2.98 7.08 -2.91 -0.02 2.96 16 34 H 0.11 4.11 7.82 -2.91 -0.02 4.09 16 35 H 0.06 2.43 8.03 -2.39 -0.02 2.41 16 36 H 0.09 3.22 7.80 -2.39 -0.02 3.20 16 37 H 0.00 -0.09 7.40 -2.39 -0.02 -0.11 16 38 H 0.02 1.19 7.21 -2.39 -0.02 1.17 16 39 H 0.04 1.68 7.84 -2.38 -0.02 1.66 16 40 H 0.25 14.78 8.31 -92.71 -0.77 14.00 16 41 H 0.19 5.75 8.06 -2.91 -0.02 5.73 16 42 H 0.14 2.99 7.30 -2.91 -0.02 2.97 16 43 H 0.16 2.07 7.94 -2.91 -0.02 2.05 16 Total: -1.00 -71.64 368.78 4.51 -67.12 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: 0.99 Total: 10.58 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: 6.45 Total: -14.79 kcal Atomic # 7 Polarization: -110.31 SS G_CDS: -3.70 Total: -114.01 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.49 kcal Atomic # 16 Polarization: 2.88 SS G_CDS: -1.27 Total: 1.61 kcal Total: -71.64 4.51 -67.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068971728.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.662 kcal (2) G-P(sol) polarization free energy of solvation -71.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.09 seconds