Wall clock time and date at job start Tue Mar 31 2020 11:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.38352 * 119.85268 * 269.72794 * 3 2 1 5 5 C 1.37965 * 120.13927 * 179.72220 * 4 3 2 6 6 C 1.39547 * 119.85711 * 0.54527 * 5 4 3 7 7 C 1.47866 * 120.14299 * 179.70263 * 6 5 4 8 8 N 1.30221 * 125.47299 * 359.74012 * 7 6 5 9 9 C 1.31313 * 117.04446 * 179.83588 * 8 7 6 10 10 C 1.50690 * 122.07935 * 180.19764 * 9 8 7 11 11 N 1.46901 * 109.47163 * 275.27740 * 10 9 8 12 12 C 1.46892 * 111.00296 * 293.95230 * 11 10 9 13 13 C 1.46907 * 111.00150 * 169.99917 * 11 10 9 14 14 C 1.50696 * 109.47064 * 190.00187 * 13 11 10 15 15 H 1.07997 * 120.00340 * 359.97438 * 14 13 11 16 16 C 1.37882 * 119.99493 * 179.97438 * 14 13 11 17 17 N 1.31508 * 120.00255 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99602 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47214 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47173 * 120.00288 * 18 16 14 21 21 H 1.48506 * 109.46737 * 240.00002 * 18 16 14 22 22 C 1.33726 * 115.84347 * 0.45852 * 9 8 7 23 23 S 1.76178 * 125.47198 * 180.02562 * 7 6 5 24 24 C 1.39551 * 119.71731 * 359.72910 * 6 5 4 25 25 C 1.37973 * 119.84974 * 359.97438 * 24 6 5 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 29 29 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 30 30 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 31 31 H 1.07999 * 119.93065 * 359.97438 * 4 3 2 32 32 H 1.07999 * 120.07341 * 180.27086 * 5 4 3 33 33 H 1.08997 * 109.47503 * 35.27501 * 10 9 8 34 34 H 1.09004 * 109.47334 * 155.27834 * 10 9 8 35 35 H 1.09001 * 109.46962 * 59.99965 * 12 11 10 36 36 H 1.09001 * 109.47465 * 180.02562 * 12 11 10 37 37 H 1.09004 * 109.47392 * 300.00276 * 12 11 10 38 38 H 1.09001 * 109.46557 * 310.00162 * 13 11 10 39 39 H 1.09002 * 109.47014 * 69.99498 * 13 11 10 40 40 H 0.97010 * 119.99846 * 180.02562 * 17 16 14 41 41 H 1.08001 * 125.89315 * 179.75598 * 22 9 8 42 42 H 1.07996 * 120.07429 * 179.97438 * 24 6 5 43 43 H 1.07997 * 119.92353 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2673 2.0682 -1.1999 5 6 2.7218 3.3709 -1.2069 6 6 2.9553 4.0316 -0.0001 7 6 3.4487 5.4255 -0.0002 8 7 3.7056 6.1362 -1.0607 9 6 4.1350 7.3621 -0.8683 10 6 4.4622 8.2846 -2.0141 11 7 5.8381 8.0364 -2.4650 12 6 6.8079 8.4107 -1.4271 13 6 6.1152 8.7419 -3.7234 14 6 7.4351 8.2752 -4.2809 15 1 8.0109 7.5294 -3.7530 16 6 7.9077 8.8004 -5.4649 17 7 7.2064 9.7082 -6.1079 18 14 9.5443 8.2224 -6.1556 19 1 10.1323 7.2038 -5.2490 20 1 9.3318 7.6264 -7.4991 21 1 10.4701 9.3781 -6.2677 22 6 4.2690 7.7393 0.4076 23 16 3.7901 6.3893 1.4346 24 6 2.7218 3.3710 1.2068 25 6 2.2614 2.0704 1.1998 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 2.0907 1.5542 -2.1332 32 1 2.9007 3.8767 -2.1442 33 1 3.7716 8.1009 -2.8371 34 1 4.3688 9.3196 -1.6854 35 1 6.6232 7.8225 -0.5282 36 1 7.8184 8.2172 -1.7871 37 1 6.7017 9.4706 -1.1959 38 1 5.3224 8.5300 -4.4408 39 1 6.1586 9.8149 -3.5363 40 1 7.5388 10.0775 -6.9412 41 1 4.6114 8.7048 0.7499 42 1 2.9010 3.8767 2.1440 43 1 2.0807 1.5579 2.1331 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078646192.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:13 Heat of formation + Delta-G solvation = 63.816670 kcal Electronic energy + Delta-G solvation = -22577.136625 eV Core-core repulsion = 19327.622642 eV Total energy + Delta-G solvation = -3249.513983 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.98927 -39.20457 -36.31787 -34.62245 -32.60794 -31.25677 -31.16937 -29.12799 -27.37743 -26.98378 -25.32665 -24.01269 -22.98634 -22.65748 -20.99144 -20.36270 -19.11400 -17.84830 -16.50675 -16.31349 -15.64635 -15.54399 -15.17695 -14.58327 -14.50383 -14.06700 -13.98321 -13.92969 -13.65352 -13.56490 -13.36261 -13.06814 -12.50866 -12.48877 -12.09374 -11.92745 -11.78380 -11.54754 -11.26473 -11.16267 -11.07140 -10.93761 -10.87597 -10.61001 -10.46141 -9.87396 -9.67606 -9.54274 -9.23435 -9.13663 -9.06577 -8.43017 -8.06905 -7.24683 -6.01555 -4.02366 0.25871 1.23909 1.36318 1.48387 1.76045 2.98258 3.32274 3.39547 3.45136 3.68481 3.95851 4.44794 4.46944 4.58582 4.80458 4.91034 4.97557 5.04270 5.12105 5.23765 5.23933 5.29831 5.34381 5.35003 5.55497 5.58227 5.65390 5.73957 5.85903 5.89104 5.91058 6.04684 6.14340 6.20996 6.30185 6.36231 6.38197 6.43750 6.73692 6.75482 7.27572 7.31974 7.80272 7.92674 8.08701 8.19083 8.54048 9.05184 9.61545 11.09403 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.015034 B = 0.002768 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.953027 B =10112.810993 C =11388.116381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.087 4.087 3 C -0.072 4.072 4 C -0.119 4.119 5 C -0.066 4.066 6 C -0.024 4.024 7 C 0.112 3.888 8 N -0.436 5.436 9 C 0.099 3.901 10 C 0.122 3.878 11 N -0.532 5.532 12 C 0.036 3.964 13 C 0.194 3.806 14 C -0.504 4.504 15 H 0.064 0.936 16 C 0.054 3.946 17 N -0.899 5.899 18 Si 0.898 3.102 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.285 1.285 22 C -0.244 4.244 23 S 0.057 5.943 24 C -0.096 4.096 25 C -0.119 4.119 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.128 0.872 32 H 0.139 0.861 33 H 0.087 0.913 34 H 0.042 0.958 35 H 0.043 0.957 36 H 0.076 0.924 37 H 0.011 0.989 38 H 0.032 0.968 39 H -0.008 1.008 40 H 0.261 0.739 41 H 0.176 0.824 42 H 0.124 0.876 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.134 -14.640 17.259 26.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.124 4.124 3 C -0.073 4.073 4 C -0.137 4.137 5 C -0.087 4.087 6 C -0.028 4.028 7 C -0.163 4.163 8 N -0.149 5.149 9 C -0.034 4.034 10 C -0.009 4.009 11 N -0.256 5.256 12 C -0.113 4.113 13 C 0.069 3.931 14 C -0.543 4.543 15 H 0.082 0.918 16 C -0.147 4.147 17 N -0.539 5.539 18 Si 0.726 3.274 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.383 4.383 23 S 0.313 5.687 24 C -0.117 4.117 25 C -0.137 4.137 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.146 0.854 32 H 0.157 0.843 33 H 0.105 0.895 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.094 0.906 37 H 0.030 0.970 38 H 0.050 0.950 39 H 0.010 0.990 40 H 0.070 0.930 41 H 0.193 0.807 42 H 0.141 0.859 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -13.175 -15.323 17.599 26.798 hybrid contribution 1.130 1.424 -0.894 2.026 sum -12.046 -13.900 16.705 24.846 Atomic orbital electron populations 1.21754 0.94593 1.01733 1.02380 1.20580 0.96260 0.92512 1.03054 1.20052 0.97829 0.96256 0.93163 1.21033 1.00262 0.94593 0.97806 1.21367 0.95427 0.93991 0.97926 1.17832 1.01816 0.88829 0.94345 1.25809 1.03211 0.97833 0.89496 1.66324 1.13152 1.05352 1.30084 1.20245 0.97990 0.90952 0.94217 1.20656 0.93833 0.92946 0.93489 1.62055 0.98914 1.59518 1.05139 1.22264 0.98284 0.96575 0.94180 1.19762 0.97541 0.91267 0.84496 1.21180 1.04045 1.22605 1.06478 0.91824 1.24986 0.97700 0.95154 0.96818 1.69968 1.38259 1.28761 1.16879 0.86442 0.83536 0.78492 0.78963 1.19672 1.20967 1.21135 1.26797 1.12087 1.03971 0.95424 1.84611 1.62983 1.07527 1.13596 1.21115 0.98995 0.95026 0.96545 1.20839 1.00760 0.94328 0.97748 0.92382 0.92382 0.92528 0.90940 0.90793 0.85427 0.84273 0.89474 0.94050 0.93830 0.90575 0.97029 0.94984 0.98985 0.92987 0.80686 0.85853 0.85625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.89 37.16 0.37 -0.51 16 2 C -0.09 -0.57 6.06 -27.88 -0.17 -0.74 16 3 C -0.07 -0.64 5.14 -104.54 -0.54 -1.18 16 4 C -0.12 -1.21 9.68 -39.64 -0.38 -1.59 16 5 C -0.07 -0.83 9.68 -39.19 -0.38 -1.21 16 6 C -0.02 -0.32 5.87 -104.98 -0.62 -0.93 16 7 C 0.11 1.67 7.35 -14.30 -0.11 1.57 16 8 N -0.44 -7.70 10.11 -7.55 -0.08 -7.77 16 9 C 0.10 1.70 5.53 -84.40 -0.47 1.24 16 10 C 0.12 2.33 5.38 -4.98 -0.03 2.30 16 11 N -0.53 -12.01 4.74 -245.83 -1.17 -13.17 16 12 C 0.04 0.72 9.06 60.06 0.54 1.27 16 13 C 0.19 5.15 4.72 -4.97 -0.02 5.13 16 14 C -0.50 -14.44 8.46 -34.44 -0.29 -14.73 16 15 H 0.06 1.83 7.12 -52.49 -0.37 1.45 16 16 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 17 N -0.90 -26.94 13.29 55.43 0.74 -26.21 16 18 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 C -0.24 -3.52 9.80 29.15 0.29 -3.23 16 23 S 0.06 0.72 22.40 -107.50 -2.41 -1.69 16 24 C -0.10 -1.01 9.61 -39.19 -0.38 -1.39 16 25 C -0.12 -1.06 9.68 -39.64 -0.38 -1.44 16 26 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 30 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 31 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 32 H 0.14 1.90 7.82 -52.49 -0.41 1.49 16 33 H 0.09 1.71 7.93 -51.93 -0.41 1.30 16 34 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 35 H 0.04 0.79 6.45 -51.93 -0.34 0.46 16 36 H 0.08 1.65 6.76 -51.93 -0.35 1.30 16 37 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 38 H 0.03 0.91 7.93 -51.93 -0.41 0.49 16 39 H -0.01 -0.21 8.12 -51.93 -0.42 -0.63 16 40 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 41 H 0.18 2.16 8.06 -52.49 -0.42 1.74 16 42 H 0.12 1.11 7.30 -52.49 -0.38 0.73 16 43 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 371.49 15.07 5.60 5.60 Total: -1.00 -31.74 371.49 -11.45 -43.19 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -6.45 Total: -2.90 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -2.66 Total: -13.99 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: -0.51 Total: -47.16 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -2.41 Total: -1.69 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.74 -11.45 -43.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078646192.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.005 kcal (2) G-P(sol) polarization free energy of solvation -31.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds