Wall clock time and date at job start Tue Mar 31 2020 11:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.38352 * 119.85268 * 269.72794 * 3 2 1 5 5 C 1.37965 * 120.13927 * 179.72220 * 4 3 2 6 6 C 1.39547 * 119.85711 * 0.54527 * 5 4 3 7 7 C 1.47866 * 120.14299 * 179.70263 * 6 5 4 8 8 N 1.30221 * 125.47299 * 359.74012 * 7 6 5 9 9 C 1.31313 * 117.04446 * 179.83588 * 8 7 6 10 10 C 1.50690 * 122.07935 * 180.19764 * 9 8 7 11 11 N 1.46901 * 109.47163 * 275.27740 * 10 9 8 12 12 C 1.46892 * 111.00296 * 293.95230 * 11 10 9 13 13 C 1.46907 * 111.00150 * 169.99917 * 11 10 9 14 14 C 1.50696 * 109.47064 * 190.00187 * 13 11 10 15 15 H 1.07997 * 120.00340 * 359.97438 * 14 13 11 16 16 C 1.37882 * 119.99493 * 179.97438 * 14 13 11 17 17 N 1.31508 * 120.00255 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99602 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47214 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47173 * 120.00288 * 18 16 14 21 21 H 1.48506 * 109.46737 * 240.00002 * 18 16 14 22 22 C 1.33726 * 115.84347 * 0.45852 * 9 8 7 23 23 S 1.76178 * 125.47198 * 180.02562 * 7 6 5 24 24 C 1.39551 * 119.71731 * 359.72910 * 6 5 4 25 25 C 1.37973 * 119.84974 * 359.97438 * 24 6 5 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 29 29 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 30 30 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 31 31 H 1.07999 * 119.93065 * 359.97438 * 4 3 2 32 32 H 1.07999 * 120.07341 * 180.27086 * 5 4 3 33 33 H 1.08997 * 109.47503 * 35.27501 * 10 9 8 34 34 H 1.09004 * 109.47334 * 155.27834 * 10 9 8 35 35 H 1.09001 * 109.46962 * 59.99965 * 12 11 10 36 36 H 1.09001 * 109.47465 * 180.02562 * 12 11 10 37 37 H 1.09004 * 109.47392 * 300.00276 * 12 11 10 38 38 H 1.09001 * 109.46557 * 310.00162 * 13 11 10 39 39 H 1.09002 * 109.47014 * 69.99498 * 13 11 10 40 40 H 0.97010 * 119.99846 * 180.02562 * 17 16 14 41 41 H 1.08001 * 125.89315 * 179.75598 * 22 9 8 42 42 H 1.07996 * 120.07429 * 179.97438 * 24 6 5 43 43 H 1.07997 * 119.92353 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2673 2.0682 -1.1999 5 6 2.7218 3.3709 -1.2069 6 6 2.9553 4.0316 -0.0001 7 6 3.4487 5.4255 -0.0002 8 7 3.7056 6.1362 -1.0607 9 6 4.1350 7.3621 -0.8683 10 6 4.4622 8.2846 -2.0141 11 7 5.8381 8.0364 -2.4650 12 6 6.8079 8.4107 -1.4271 13 6 6.1152 8.7419 -3.7234 14 6 7.4351 8.2752 -4.2809 15 1 8.0109 7.5294 -3.7530 16 6 7.9077 8.8004 -5.4649 17 7 7.2064 9.7082 -6.1079 18 14 9.5443 8.2224 -6.1556 19 1 10.1323 7.2038 -5.2490 20 1 9.3318 7.6264 -7.4991 21 1 10.4701 9.3781 -6.2677 22 6 4.2690 7.7393 0.4076 23 16 3.7901 6.3893 1.4346 24 6 2.7218 3.3710 1.2068 25 6 2.2614 2.0704 1.1998 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 2.0907 1.5542 -2.1332 32 1 2.9007 3.8767 -2.1442 33 1 3.7716 8.1009 -2.8371 34 1 4.3688 9.3196 -1.6854 35 1 6.6232 7.8225 -0.5282 36 1 7.8184 8.2172 -1.7871 37 1 6.7017 9.4706 -1.1959 38 1 5.3224 8.5300 -4.4408 39 1 6.1586 9.8149 -3.5363 40 1 7.5388 10.0775 -6.9412 41 1 4.6114 8.7048 0.7499 42 1 2.9010 3.8767 2.1440 43 1 2.0807 1.5579 2.1331 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078646192.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:12 Heat of formation + Delta-G solvation = 45.611556 kcal Electronic energy + Delta-G solvation = -22577.926058 eV Core-core repulsion = 19327.622642 eV Total energy + Delta-G solvation = -3250.303416 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.07602 -40.14541 -38.01813 -35.39529 -34.68147 -32.35587 -31.97873 -30.19740 -29.09586 -28.64773 -26.37232 -25.64980 -23.79749 -23.68693 -22.40589 -21.57326 -20.25353 -18.99700 -18.44142 -17.52374 -16.93453 -16.42419 -16.29362 -16.28671 -15.75272 -15.71178 -15.15610 -14.96055 -14.60354 -14.48714 -14.26139 -14.08389 -13.92660 -13.75648 -13.50361 -13.27194 -12.93470 -12.85360 -12.74440 -12.60550 -12.42341 -12.26718 -12.17462 -11.87562 -11.78880 -11.65846 -11.33238 -10.71449 -10.66800 -10.63679 -10.14728 -9.93524 -9.12636 -8.98451 -8.22569 -6.32654 -0.75252 0.29252 0.43442 0.52538 0.62580 1.38796 1.39954 1.53568 1.80940 2.39191 2.82582 2.91952 3.09644 3.43245 3.73783 3.89263 3.92713 4.04051 4.16199 4.26468 4.31413 4.40352 4.44450 4.55901 4.57047 4.58165 4.62657 4.69178 4.74712 4.94401 5.00758 5.04132 5.07414 5.13213 5.15144 5.18263 5.24870 5.41769 5.45472 5.49833 5.61605 5.67160 5.97746 6.00702 6.27553 6.54243 6.80623 6.82557 7.36622 8.88660 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.015034 B = 0.002768 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.953027 B =10112.810993 C =11388.116381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.066 4.066 4 C -0.124 4.124 5 C -0.087 4.087 6 C -0.052 4.052 7 C 0.098 3.902 8 N -0.481 5.481 9 C 0.073 3.927 10 C 0.126 3.874 11 N -0.546 5.546 12 C 0.043 3.957 13 C 0.211 3.789 14 C -0.523 4.523 15 H 0.059 0.941 16 C 0.002 3.998 17 N -0.933 5.933 18 Si 0.970 3.030 19 H -0.266 1.266 20 H -0.278 1.278 21 H -0.275 1.275 22 C -0.244 4.244 23 S 0.132 5.868 24 C -0.095 4.095 25 C -0.115 4.115 26 H 0.071 0.929 27 H 0.048 0.952 28 H 0.057 0.943 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.140 0.860 32 H 0.114 0.886 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.022 0.978 38 H 0.002 0.998 39 H -0.029 1.029 40 H 0.265 0.735 41 H 0.198 0.802 42 H 0.140 0.860 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.966 -16.655 19.938 29.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.067 4.067 4 C -0.142 4.142 5 C -0.108 4.108 6 C -0.056 4.056 7 C -0.177 4.177 8 N -0.195 5.195 9 C -0.059 4.059 10 C -0.004 4.004 11 N -0.271 5.271 12 C -0.105 4.105 13 C 0.085 3.915 14 C -0.561 4.561 15 H 0.077 0.923 16 C -0.196 4.196 17 N -0.573 5.573 18 Si 0.795 3.205 19 H -0.190 1.190 20 H -0.203 1.203 21 H -0.200 1.200 22 C -0.384 4.384 23 S 0.389 5.611 24 C -0.115 4.115 25 C -0.132 4.132 26 H 0.090 0.910 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.108 0.892 30 H 0.097 0.903 31 H 0.158 0.842 32 H 0.132 0.868 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.040 0.960 38 H 0.020 0.980 39 H -0.012 1.012 40 H 0.074 0.926 41 H 0.215 0.785 42 H 0.158 0.842 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -13.020 -17.344 20.308 29.711 hybrid contribution 0.957 1.945 -1.622 2.708 sum -12.063 -15.399 18.686 27.052 Atomic orbital electron populations 1.21749 0.94058 1.02559 1.02003 1.20651 0.96568 0.90804 1.04222 1.20408 0.96269 0.97396 0.92614 1.21219 0.99982 0.93748 0.99281 1.21306 0.97126 0.95195 0.97191 1.18012 1.03660 0.88480 0.95465 1.26209 1.02517 0.98651 0.90276 1.66263 1.15027 1.06027 1.32206 1.19909 1.00544 0.91104 0.94381 1.20545 0.91333 0.94524 0.94030 1.61925 1.01298 1.59216 1.04639 1.22195 0.96594 0.97625 0.94083 1.19384 0.95953 0.90177 0.86025 1.21442 1.04874 1.22734 1.07079 0.92285 1.25910 1.01615 0.95071 0.97014 1.70087 1.40146 1.29740 1.17367 0.85320 0.78735 0.78302 0.78163 1.19022 1.20315 1.20020 1.27086 1.10624 1.05594 0.95079 1.84247 1.61164 1.04892 1.10753 1.21323 0.98477 0.95673 0.96030 1.21234 0.99265 0.93688 0.99034 0.90991 0.93296 0.92417 0.89211 0.90270 0.84192 0.86787 0.91408 0.92619 0.91470 0.92445 0.95981 0.97964 1.01154 0.92584 0.78534 0.84244 0.82402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.89 71.98 0.71 -0.65 16 2 C -0.09 -0.86 6.06 29.85 0.18 -0.68 16 3 C -0.07 -1.04 5.14 -19.81 -0.10 -1.14 16 4 C -0.12 -2.49 9.68 22.23 0.22 -2.27 16 5 C -0.09 -2.28 9.68 22.52 0.22 -2.06 16 6 C -0.05 -1.36 5.87 -20.10 -0.12 -1.47 16 7 C 0.10 2.93 7.35 87.48 0.64 3.57 16 8 N -0.48 -17.61 10.11 -177.80 -1.80 -19.41 16 9 C 0.07 2.57 5.53 41.61 0.23 2.80 16 10 C 0.13 5.03 5.38 85.55 0.46 5.49 16 11 N -0.55 -25.61 4.74 -931.67 -4.42 -30.03 16 12 C 0.04 1.76 9.06 127.69 1.16 2.92 16 13 C 0.21 11.76 4.72 85.55 0.40 12.16 16 14 C -0.52 -30.87 8.46 25.60 0.22 -30.65 16 15 H 0.06 3.47 7.12 -2.91 -0.02 3.45 16 16 C 0.00 0.11 5.46 84.66 0.46 0.58 16 17 N -0.93 -57.26 13.29 21.45 0.28 -56.98 16 18 Si 0.97 45.53 29.54 68.60 2.03 47.55 16 19 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 22 C -0.24 -6.71 9.80 66.79 0.65 -6.06 16 23 S 0.13 3.06 22.40 -56.49 -1.27 1.79 16 24 C -0.09 -1.80 9.61 22.52 0.22 -1.58 16 25 C -0.11 -1.71 9.68 22.23 0.22 -1.49 16 26 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 29 H 0.09 0.65 8.08 -2.39 -0.02 0.63 16 30 H 0.08 0.75 8.08 -2.39 -0.02 0.73 16 31 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 32 H 0.11 3.47 7.82 -2.91 -0.02 3.45 16 33 H 0.07 2.88 7.93 -2.39 -0.02 2.86 16 34 H 0.06 2.01 8.07 -2.38 -0.02 1.99 16 35 H 0.07 2.39 6.45 -2.39 -0.02 2.37 16 36 H 0.06 2.53 6.76 -2.39 -0.02 2.51 16 37 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.00 0.14 7.93 -2.39 -0.02 0.12 16 39 H -0.03 -1.72 8.12 -2.39 -0.02 -1.74 16 40 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 41 H 0.20 4.37 8.06 -2.91 -0.02 4.35 16 42 H 0.14 2.09 7.30 -2.91 -0.02 2.07 16 43 H 0.16 1.34 8.06 -2.91 -0.02 1.31 16 Total: -1.00 -71.10 371.49 1.58 -69.52 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: 0.99 Total: 8.09 kcal Atomic # 6 Polarization: -26.31 SS G_CDS: 5.77 Total: -20.55 kcal Atomic # 7 Polarization: -100.47 SS G_CDS: -5.93 Total: -106.41 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Atomic # 16 Polarization: 3.06 SS G_CDS: -1.27 Total: 1.79 kcal Total: -71.10 1.58 -69.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078646192.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.127 kcal (2) G-P(sol) polarization free energy of solvation -71.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds