Wall clock time and date at job start Tue Mar 31 2020 11:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50700 * 120.00095 * 2 1 4 4 N 1.46900 * 109.47196 * 124.13771 * 3 2 1 5 5 C 1.46904 * 110.99813 * 300.60818 * 4 3 2 6 6 C 1.53003 * 109.46982 * 287.98147 * 5 4 3 7 7 C 1.52997 * 109.47243 * 179.26900 * 6 5 4 8 8 S 1.81008 * 109.47059 * 180.02562 * 7 6 5 9 9 C 1.76195 * 99.99896 * 179.97438 * 8 7 6 10 10 H 1.08005 * 120.00056 * 359.97438 * 9 8 7 11 11 C 1.38803 * 120.00042 * 179.97438 * 9 8 7 12 12 N 1.31628 * 119.99606 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00018 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47108 * 59.99923 * 13 11 9 15 15 H 1.48500 * 109.47182 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47167 * 299.99930 * 13 11 9 17 17 C 1.46897 * 111.00098 * 64.55538 * 4 3 2 18 18 C 1.50696 * 109.46889 * 66.04572 * 17 4 3 19 19 C 1.38389 * 119.92793 * 270.02207 * 18 17 4 20 20 C 1.38339 * 120.30744 * 179.97438 * 19 18 17 21 21 C 1.37969 * 120.14896 * 359.67785 * 20 19 18 22 22 C 1.39613 * 119.84741 * 0.60221 * 21 20 19 23 23 C 1.43203 * 120.15149 * 179.69891 * 22 21 20 24 24 N 8.28787 * 157.12075 * 346.19423 * 2 1 3 25 25 C 1.37932 * 119.92638 * 90.00283 * 18 17 4 26 26 H 1.08002 * 119.99913 * 0.02562 * 1 2 3 27 27 H 1.07994 * 120.00395 * 179.97438 * 1 2 3 28 28 H 1.08000 * 119.99398 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.46786 * 4.13805 * 3 2 1 30 30 H 1.08997 * 109.46992 * 244.13633 * 3 2 1 31 31 H 1.08999 * 109.47537 * 47.98267 * 5 4 3 32 32 H 1.09005 * 109.46968 * 167.98731 * 5 4 3 33 33 H 1.09003 * 109.47438 * 299.27048 * 6 5 4 34 34 H 1.09001 * 109.47126 * 59.26611 * 6 5 4 35 35 H 1.09000 * 109.46616 * 299.99764 * 7 6 5 36 36 H 1.08997 * 109.47361 * 60.00310 * 7 6 5 37 37 H 0.96999 * 119.99561 * 179.97438 * 12 11 9 38 38 H 1.09002 * 109.47337 * 306.05229 * 17 4 3 39 39 H 1.08996 * 109.47493 * 186.05013 * 17 4 3 40 40 H 1.07996 * 119.84563 * 359.97438 * 19 18 17 41 41 H 1.07997 * 119.92325 * 180.02562 * 20 19 18 42 42 H 1.08008 * 120.07652 * 180.29667 * 21 20 19 43 43 H 1.08006 * 120.07059 * 0.04156 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9815 1.3405 1.1463 5 6 2.2483 1.2063 2.4122 6 6 1.4750 2.4963 2.6929 7 6 0.6969 2.3499 4.0021 8 16 -0.2186 3.8758 4.3338 9 6 -0.9997 3.4401 5.8519 10 1 -0.8322 2.4650 6.2850 11 6 -1.8303 4.3501 6.4912 12 7 -2.0339 5.5387 5.9635 13 14 -2.6589 3.8879 8.1002 14 1 -1.6239 3.5711 9.1169 15 1 -3.4869 5.0255 8.5752 16 1 -3.5243 2.6999 7.8880 17 6 4.0158 0.3045 1.0248 18 6 4.9019 0.6153 -0.1539 19 6 4.5843 0.1195 -1.4062 20 6 5.3919 0.4004 -2.4937 21 6 6.5171 1.1833 -2.3374 22 6 6.8468 1.6820 -1.0757 23 6 8.0167 2.4899 -0.9048 24 7 8.9459 3.1292 -0.7689 25 6 6.0276 1.3938 0.0179 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9352 -0.0004 28 1 1.8499 -0.9354 0.0004 29 1 1.3575 2.1322 0.0742 30 1 2.6334 1.3956 -0.9247 31 1 1.5501 0.3723 2.3411 32 1 2.9534 1.0217 3.2227 33 1 2.1743 3.3282 2.7770 34 1 0.7791 2.6879 1.8761 35 1 -0.0025 1.5181 3.9179 36 1 1.3927 2.1584 4.8189 37 1 -2.6147 6.1744 6.4101 38 1 3.5423 -0.6661 0.8773 39 1 4.6158 0.2816 1.9344 40 1 3.7018 -0.4896 -1.5351 41 1 5.1379 0.0105 -3.4683 42 1 7.1442 1.4058 -3.1881 43 1 6.2746 1.7798 0.9959 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080627581.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:31 Heat of formation + Delta-G solvation = 67.399167 kcal Electronic energy + Delta-G solvation = -22362.456222 eV Core-core repulsion = 19113.097587 eV Total energy + Delta-G solvation = -3249.358634 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.20219 -38.35812 -36.65961 -33.68558 -33.41819 -32.41543 -31.66947 -31.09538 -27.03597 -26.56231 -25.48284 -24.21246 -23.23820 -21.79414 -21.14691 -19.50942 -18.42205 -17.44319 -16.75197 -16.35976 -16.04324 -15.57164 -14.94273 -14.79401 -14.71997 -14.32503 -14.30290 -14.08460 -13.80816 -13.40831 -13.18886 -13.11587 -12.97171 -12.58153 -12.21575 -12.12132 -11.82484 -11.78686 -11.59263 -11.46081 -11.33070 -11.22469 -11.03982 -10.79562 -10.62477 -10.27639 -9.58643 -9.53054 -9.31962 -9.19500 -9.03916 -8.37662 -8.27785 -6.50833 -6.21323 -3.91291 0.41370 0.91828 2.11464 2.37675 2.60644 3.22100 3.23632 3.28338 3.43852 3.55415 3.59755 4.04323 4.24280 4.37831 4.45539 4.64130 4.75768 4.82226 4.87097 4.99325 5.12462 5.14482 5.15410 5.27134 5.38287 5.41945 5.49130 5.57794 5.64892 5.75077 5.77819 5.84269 5.89116 5.91053 5.93363 6.07604 6.13798 6.36368 6.40857 6.46096 6.52904 6.61963 6.77393 6.96650 7.04769 7.18725 7.61396 8.37651 9.24804 10.86783 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.018448 B = 0.002342 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.438235 B =11953.191826 C =12943.705747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.201 4.201 3 C 0.073 3.927 4 N -0.524 5.524 5 C 0.058 3.942 6 C -0.090 4.090 7 C -0.111 4.111 8 S -0.132 6.132 9 C -0.516 4.516 10 H 0.071 0.929 11 C 0.071 3.929 12 N -0.870 5.870 13 Si 0.917 3.083 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.274 1.274 17 C 0.086 3.914 18 C -0.073 4.073 19 C -0.084 4.084 20 C -0.121 4.121 21 C -0.073 4.073 22 C -0.031 4.031 23 C 0.256 3.744 24 N -0.419 5.419 25 C -0.048 4.048 26 H 0.102 0.898 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.042 0.958 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.267 0.733 38 H 0.050 0.950 39 H 0.086 0.914 40 H 0.128 0.872 41 H 0.132 0.868 42 H 0.130 0.870 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.593 -14.764 -17.594 26.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.221 4.221 3 C -0.055 4.055 4 N -0.246 5.246 5 C -0.071 4.071 6 C -0.129 4.129 7 C -0.261 4.261 8 S 0.096 5.904 9 C -0.664 4.664 10 H 0.089 0.911 11 C -0.138 4.138 12 N -0.505 5.505 13 Si 0.744 3.256 14 H -0.200 1.200 15 H -0.208 1.208 16 H -0.200 1.200 17 C -0.041 4.041 18 C -0.073 4.073 19 C -0.103 4.103 20 C -0.139 4.139 21 C -0.093 4.093 22 C -0.034 4.034 23 C -0.060 4.060 24 N -0.094 5.094 25 C -0.069 4.069 26 H 0.120 0.880 27 H 0.112 0.888 28 H 0.122 0.878 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.060 0.940 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.104 0.896 40 H 0.146 0.854 41 H 0.150 0.850 42 H 0.148 0.852 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 14.130 -12.140 -17.921 25.849 hybrid contribution -1.336 -2.469 1.692 3.278 sum 12.794 -14.609 -16.229 25.308 Atomic orbital electron populations 1.23960 0.95996 1.02190 0.98487 1.23545 0.96758 0.99679 1.02082 1.21516 0.94847 0.94737 0.94369 1.62306 1.13387 1.46336 1.02595 1.22239 0.96548 0.98259 0.90059 1.21220 0.98279 0.96806 0.96583 1.23222 1.01058 1.03139 0.98659 1.84637 1.57772 1.16665 1.31319 1.22646 1.32806 1.03319 1.07673 0.91084 1.25010 0.95984 0.94567 0.98235 1.70013 1.36051 1.05587 1.38884 0.86240 0.79201 0.78085 0.82097 1.19953 1.20831 1.19972 1.21108 0.92982 0.93863 0.96154 1.19696 0.95124 0.97460 0.95069 1.21378 0.98777 0.98067 0.92064 1.21054 0.94691 0.98865 0.99316 1.21164 0.96971 0.95822 0.95392 1.15986 0.91684 1.00464 0.95315 1.25736 0.93020 0.93398 0.93821 1.81266 1.11175 1.09716 1.07280 1.21093 0.92724 0.95005 0.98090 0.88016 0.88770 0.87812 0.89537 0.89855 0.94026 0.91029 0.90903 0.91777 0.92431 0.92265 0.92277 0.93203 0.89553 0.85395 0.84978 0.85170 0.84728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 14.32 29.01 0.42 -1.18 16 2 C -0.20 -1.77 7.33 -36.03 -0.26 -2.03 16 3 C 0.07 0.69 5.31 -4.98 -0.03 0.67 16 4 N -0.52 -5.37 4.66 -237.52 -1.11 -6.47 16 5 C 0.06 0.70 4.82 -3.82 -0.02 0.68 16 6 C -0.09 -1.41 5.28 -26.73 -0.14 -1.55 16 7 C -0.11 -2.20 5.67 37.16 0.21 -1.99 16 8 S -0.13 -3.44 21.44 -107.50 -2.30 -5.74 16 9 C -0.52 -14.76 9.50 30.94 0.29 -14.47 16 10 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 11 C 0.07 2.02 5.49 -17.43 -0.10 1.92 16 12 N -0.87 -26.00 13.22 55.49 0.73 -25.27 16 13 Si 0.92 21.50 29.55 -169.99 -5.02 16.47 16 14 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 17 C 0.09 0.68 4.95 -4.98 -0.02 0.66 16 18 C -0.07 -0.53 4.89 -104.68 -0.51 -1.04 16 19 C -0.08 -0.50 7.89 -39.49 -0.31 -0.81 16 20 C -0.12 -0.62 10.03 -39.64 -0.40 -1.02 16 21 C -0.07 -0.43 9.76 -39.17 -0.38 -0.82 16 22 C -0.03 -0.24 5.73 -106.93 -0.61 -0.85 16 23 C 0.26 2.54 15.33 -22.47 -0.34 2.19 16 24 N -0.42 -5.22 18.54 41.84 0.78 -4.44 16 25 C -0.05 -0.37 9.40 -39.17 -0.37 -0.74 16 26 H 0.10 1.04 7.84 -52.49 -0.41 0.63 16 27 H 0.09 0.80 8.06 -52.49 -0.42 0.37 16 28 H 0.10 0.79 6.81 -52.49 -0.36 0.43 16 29 H 0.09 0.96 6.36 -51.93 -0.33 0.63 16 30 H 0.08 0.71 5.84 -51.93 -0.30 0.41 16 31 H 0.04 0.51 6.69 -51.93 -0.35 0.16 16 32 H 0.07 0.84 7.81 -51.93 -0.41 0.43 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.06 1.02 6.75 -51.93 -0.35 0.67 16 35 H 0.06 1.13 8.14 -51.92 -0.42 0.70 16 36 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 37 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.05 0.36 6.30 -51.93 -0.33 0.03 16 39 H 0.09 0.65 7.80 -51.93 -0.41 0.25 16 40 H 0.13 0.62 7.89 -52.49 -0.41 0.20 16 41 H 0.13 0.40 8.06 -52.49 -0.42 -0.03 16 42 H 0.13 0.56 8.06 -52.48 -0.42 0.14 16 43 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 LS Contribution 377.30 15.07 5.69 5.69 Total: -1.00 -32.21 377.30 -9.97 -42.18 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -6.16 Total: -2.05 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: -2.58 Total: -20.37 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: 0.40 Total: -36.19 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -3.44 SS G_CDS: -2.30 Total: -5.74 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.21 -9.97 -42.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080627581.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.583 kcal (2) G-P(sol) polarization free energy of solvation -32.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds