Wall clock time and date at job start Tue Mar 31 2020 11:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50700 * 120.00095 * 2 1 4 4 N 1.46900 * 109.47196 * 124.13771 * 3 2 1 5 5 C 1.46904 * 110.99813 * 300.60818 * 4 3 2 6 6 C 1.53003 * 109.46982 * 287.98147 * 5 4 3 7 7 C 1.52997 * 109.47243 * 179.26900 * 6 5 4 8 8 S 1.81008 * 109.47059 * 180.02562 * 7 6 5 9 9 C 1.76195 * 99.99896 * 179.97438 * 8 7 6 10 10 H 1.08005 * 120.00056 * 359.97438 * 9 8 7 11 11 C 1.38803 * 120.00042 * 179.97438 * 9 8 7 12 12 N 1.31628 * 119.99606 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00018 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47108 * 59.99923 * 13 11 9 15 15 H 1.48500 * 109.47182 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47167 * 299.99930 * 13 11 9 17 17 C 1.46897 * 111.00098 * 64.55538 * 4 3 2 18 18 C 1.50696 * 109.46889 * 66.04572 * 17 4 3 19 19 C 1.38389 * 119.92793 * 270.02207 * 18 17 4 20 20 C 1.38339 * 120.30744 * 179.97438 * 19 18 17 21 21 C 1.37969 * 120.14896 * 359.67785 * 20 19 18 22 22 C 1.39613 * 119.84741 * 0.60221 * 21 20 19 23 23 C 1.43203 * 120.15149 * 179.69891 * 22 21 20 24 24 N 8.28787 * 157.12075 * 346.19423 * 2 1 3 25 25 C 1.37932 * 119.92638 * 90.00283 * 18 17 4 26 26 H 1.08002 * 119.99913 * 0.02562 * 1 2 3 27 27 H 1.07994 * 120.00395 * 179.97438 * 1 2 3 28 28 H 1.08000 * 119.99398 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.46786 * 4.13805 * 3 2 1 30 30 H 1.08997 * 109.46992 * 244.13633 * 3 2 1 31 31 H 1.08999 * 109.47537 * 47.98267 * 5 4 3 32 32 H 1.09005 * 109.46968 * 167.98731 * 5 4 3 33 33 H 1.09003 * 109.47438 * 299.27048 * 6 5 4 34 34 H 1.09001 * 109.47126 * 59.26611 * 6 5 4 35 35 H 1.09000 * 109.46616 * 299.99764 * 7 6 5 36 36 H 1.08997 * 109.47361 * 60.00310 * 7 6 5 37 37 H 0.96999 * 119.99561 * 179.97438 * 12 11 9 38 38 H 1.09002 * 109.47337 * 306.05229 * 17 4 3 39 39 H 1.08996 * 109.47493 * 186.05013 * 17 4 3 40 40 H 1.07996 * 119.84563 * 359.97438 * 19 18 17 41 41 H 1.07997 * 119.92325 * 180.02562 * 20 19 18 42 42 H 1.08008 * 120.07652 * 180.29667 * 21 20 19 43 43 H 1.08006 * 120.07059 * 0.04156 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9815 1.3405 1.1463 5 6 2.2483 1.2063 2.4122 6 6 1.4750 2.4963 2.6929 7 6 0.6969 2.3499 4.0021 8 16 -0.2186 3.8758 4.3338 9 6 -0.9997 3.4401 5.8519 10 1 -0.8322 2.4650 6.2850 11 6 -1.8303 4.3501 6.4912 12 7 -2.0339 5.5387 5.9635 13 14 -2.6589 3.8879 8.1002 14 1 -1.6239 3.5711 9.1169 15 1 -3.4869 5.0255 8.5752 16 1 -3.5243 2.6999 7.8880 17 6 4.0158 0.3045 1.0248 18 6 4.9019 0.6153 -0.1539 19 6 4.5843 0.1195 -1.4062 20 6 5.3919 0.4004 -2.4937 21 6 6.5171 1.1833 -2.3374 22 6 6.8468 1.6820 -1.0757 23 6 8.0167 2.4899 -0.9048 24 7 8.9459 3.1292 -0.7689 25 6 6.0276 1.3938 0.0179 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9352 -0.0004 28 1 1.8499 -0.9354 0.0004 29 1 1.3575 2.1322 0.0742 30 1 2.6334 1.3956 -0.9247 31 1 1.5501 0.3723 2.3411 32 1 2.9534 1.0217 3.2227 33 1 2.1743 3.3282 2.7770 34 1 0.7791 2.6879 1.8761 35 1 -0.0025 1.5181 3.9179 36 1 1.3927 2.1584 4.8189 37 1 -2.6147 6.1744 6.4101 38 1 3.5423 -0.6661 0.8773 39 1 4.6158 0.2816 1.9344 40 1 3.7018 -0.4896 -1.5351 41 1 5.1379 0.0105 -3.4683 42 1 7.1442 1.4058 -3.1881 43 1 6.2746 1.7798 0.9959 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080627581.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:30 Heat of formation + Delta-G solvation = 50.097436 kcal Electronic energy + Delta-G solvation = -22363.206481 eV Core-core repulsion = 19113.097587 eV Total energy + Delta-G solvation = -3250.108894 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.77855 -39.13182 -37.46651 -34.82308 -34.56196 -34.10836 -32.21789 -31.88879 -27.99951 -27.71547 -27.27007 -24.78427 -24.19033 -22.38761 -22.24126 -20.32221 -19.51710 -19.04218 -17.28884 -17.07008 -16.94300 -16.88195 -16.33082 -15.91856 -15.82756 -15.31746 -15.20916 -15.00143 -14.85761 -14.47558 -14.08899 -13.96699 -13.90756 -13.51738 -13.38463 -13.16719 -13.00920 -12.86352 -12.78764 -12.51121 -12.47318 -12.35448 -12.29614 -12.12227 -11.87967 -11.52252 -11.30350 -11.11713 -10.28915 -10.27955 -9.83371 -9.75284 -9.14567 -8.64463 -8.35696 -6.11604 -0.13728 0.42876 1.32003 1.40461 1.41274 1.48265 1.61002 1.77408 1.95244 2.30365 2.82360 2.90613 2.98328 3.24367 3.37672 3.82802 3.97183 3.99503 4.12850 4.15762 4.22899 4.26385 4.37286 4.39993 4.47328 4.56712 4.61423 4.70645 4.78852 4.84174 4.88601 4.94985 5.02728 5.10414 5.15641 5.24222 5.37986 5.40576 5.40968 5.45761 5.60676 5.74894 5.80678 5.94210 6.19230 6.19483 6.20888 6.44439 7.06329 8.73410 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.018448 B = 0.002342 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.438235 B =11953.191826 C =12943.705747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.191 4.191 3 C 0.073 3.927 4 N -0.534 5.534 5 C 0.070 3.930 6 C -0.079 4.079 7 C -0.084 4.084 8 S -0.202 6.202 9 C -0.537 4.537 10 H 0.073 0.927 11 C 0.014 3.986 12 N -0.908 5.908 13 Si 0.993 3.007 14 H -0.265 1.265 15 H -0.276 1.276 16 H -0.264 1.264 17 C 0.088 3.912 18 C -0.082 4.082 19 C -0.078 4.078 20 C -0.116 4.116 21 C -0.067 4.067 22 C -0.048 4.048 23 C 0.278 3.722 24 N -0.473 5.473 25 C -0.055 4.055 26 H 0.086 0.914 27 H 0.105 0.895 28 H 0.125 0.875 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.046 0.954 32 H 0.079 0.921 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.271 0.729 38 H 0.065 0.935 39 H 0.088 0.912 40 H 0.145 0.855 41 H 0.161 0.839 42 H 0.147 0.853 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.552 -17.353 -18.275 28.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.210 4.210 3 C -0.054 4.054 4 N -0.256 5.256 5 C -0.059 4.059 6 C -0.118 4.118 7 C -0.234 4.234 8 S 0.027 5.973 9 C -0.684 4.684 10 H 0.091 0.909 11 C -0.191 4.191 12 N -0.544 5.544 13 Si 0.815 3.185 14 H -0.190 1.190 15 H -0.201 1.201 16 H -0.188 1.188 17 C -0.039 4.039 18 C -0.082 4.082 19 C -0.097 4.097 20 C -0.134 4.134 21 C -0.087 4.087 22 C -0.051 4.051 23 C -0.036 4.036 24 N -0.149 5.149 25 C -0.077 4.077 26 H 0.104 0.896 27 H 0.123 0.877 28 H 0.143 0.857 29 H 0.083 0.917 30 H 0.116 0.884 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.107 0.893 40 H 0.163 0.837 41 H 0.179 0.821 42 H 0.165 0.835 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 14.101 -14.737 -18.616 27.615 hybrid contribution -1.294 -1.712 1.789 2.794 sum 12.807 -16.449 -16.827 26.791 Atomic orbital electron populations 1.24012 0.96503 1.02055 0.99516 1.23594 0.96417 0.99927 1.01053 1.21490 0.94649 0.94576 0.94676 1.62206 1.13625 1.47952 1.01788 1.21992 0.96545 0.95777 0.91577 1.21101 0.97801 0.98684 0.94180 1.23138 1.00379 0.99148 1.00715 1.84677 1.59276 1.22030 1.31306 1.23002 1.33372 1.03603 1.08469 0.90917 1.26075 0.96486 0.94328 1.02196 1.70156 1.36822 1.06778 1.40690 0.85082 0.78212 0.78165 0.77067 1.18953 1.20072 1.18825 1.21139 0.92305 0.93640 0.96784 1.19651 0.94928 0.98109 0.95535 1.21626 0.99172 0.97351 0.91539 1.21374 0.93729 0.97883 1.00366 1.21425 0.97325 0.95000 0.94994 1.16073 0.91293 1.01405 0.96377 1.26110 0.92732 0.92438 0.92302 1.81276 1.12956 1.11711 1.08983 1.21110 0.93189 0.95376 0.97977 0.89578 0.87693 0.85743 0.91671 0.88447 0.93626 0.90253 0.92057 0.92289 0.92129 0.92014 0.92027 0.91691 0.89322 0.83686 0.82145 0.83531 0.85278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.19 14.32 67.78 0.97 -2.22 16 2 C -0.19 -2.86 7.33 25.64 0.19 -2.68 16 3 C 0.07 1.27 5.31 85.56 0.45 1.72 16 4 N -0.53 -9.95 4.66 -905.37 -4.22 -14.17 16 5 C 0.07 1.59 4.82 86.30 0.42 2.01 16 6 C -0.08 -2.45 5.28 30.59 0.16 -2.29 16 7 C -0.08 -3.32 5.67 71.98 0.41 -2.92 16 8 S -0.20 -10.77 21.44 -56.49 -1.21 -11.98 16 9 C -0.54 -31.05 9.50 67.96 0.65 -30.41 16 10 H 0.07 4.03 7.80 -2.91 -0.02 4.01 16 11 C 0.01 0.80 5.49 84.86 0.47 1.26 16 12 N -0.91 -55.20 13.22 21.65 0.29 -54.91 16 13 Si 0.99 43.94 29.55 68.60 2.03 45.96 16 14 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 15 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 16 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 17 C 0.09 1.16 4.95 85.56 0.42 1.59 16 18 C -0.08 -0.98 4.89 -19.90 -0.10 -1.08 16 19 C -0.08 -0.64 7.89 22.33 0.18 -0.47 16 20 C -0.12 -0.76 10.03 22.23 0.22 -0.54 16 21 C -0.07 -0.62 9.76 22.54 0.22 -0.40 16 22 C -0.05 -0.68 5.73 -21.36 -0.12 -0.80 16 23 C 0.28 5.51 15.33 88.33 1.35 6.86 16 24 N -0.47 -12.06 18.54 19.00 0.35 -11.71 16 25 C -0.06 -0.79 9.40 22.54 0.21 -0.57 16 26 H 0.09 1.76 7.84 -2.91 -0.02 1.73 16 27 H 0.10 1.59 8.06 -2.91 -0.02 1.56 16 28 H 0.12 1.39 6.81 -2.91 -0.02 1.37 16 29 H 0.06 1.41 6.36 -2.39 -0.02 1.40 16 30 H 0.10 1.41 5.84 -2.39 -0.01 1.39 16 31 H 0.05 1.01 6.69 -2.39 -0.02 1.00 16 32 H 0.08 1.70 7.81 -2.38 -0.02 1.68 16 33 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.06 1.90 6.75 -2.39 -0.02 1.88 16 35 H 0.06 2.35 8.14 -2.40 -0.02 2.33 16 36 H 0.06 2.39 8.14 -2.40 -0.02 2.37 16 37 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 38 H 0.07 0.68 6.30 -2.39 -0.02 0.67 16 39 H 0.09 1.14 7.80 -2.39 -0.02 1.12 16 40 H 0.15 0.73 7.89 -2.91 -0.02 0.71 16 41 H 0.16 0.19 8.06 -2.91 -0.02 0.17 16 42 H 0.15 0.86 8.06 -2.91 -0.02 0.84 16 43 H 0.13 1.89 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -71.41 377.30 4.33 -67.07 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 1.00 Total: 10.67 kcal Atomic # 6 Polarization: -37.03 SS G_CDS: 6.10 Total: -30.94 kcal Atomic # 7 Polarization: -77.21 SS G_CDS: -3.58 Total: -80.79 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: -10.77 SS G_CDS: -1.21 Total: -11.98 kcal Total: -71.41 4.33 -67.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080627581.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.172 kcal (2) G-P(sol) polarization free energy of solvation -71.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds