Wall clock time and date at job start Tue Mar 31 2020 10:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38049 * 119.99822 * 2 1 4 4 C 1.38867 * 119.99929 * 180.02562 * 3 2 1 5 5 N 1.40007 * 120.00764 * 179.97438 * 4 3 2 6 6 C 1.34774 * 120.00082 * 146.34018 * 5 4 3 7 7 O 1.21589 * 119.99871 * 354.77696 * 6 5 4 8 8 N 1.34771 * 120.00192 * 174.78414 * 6 5 4 9 9 C 1.46498 * 119.99886 * 359.97438 * 8 6 5 10 10 C 1.46503 * 120.00138 * 180.02562 * 8 6 5 11 11 C 1.50696 * 109.47306 * 89.99536 * 10 8 6 12 12 H 1.08000 * 119.99928 * 0.02562 * 11 10 8 13 13 C 1.37877 * 120.00077 * 179.97438 * 11 10 8 14 14 N 1.31515 * 119.99990 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00105 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47162 * 60.00596 * 15 13 11 17 17 H 1.48502 * 109.46997 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47679 * 300.00311 * 15 13 11 19 19 C 1.38902 * 119.98604 * 359.97438 * 4 3 2 20 20 C 1.38010 * 119.99797 * 359.74886 * 19 4 3 21 21 C 1.38824 * 120.00097 * 180.02562 * 2 1 3 22 22 N 1.40328 * 119.99409 * 0.02562 * 21 2 1 23 23 C 1.35035 * 127.39070 * 131.43408 * 22 21 2 24 24 N 1.30749 * 107.28063 * 180.24146 * 23 22 21 25 25 N 1.28425 * 110.64086 * 359.55088 * 24 23 22 26 26 N 1.28953 * 110.19772 * 0.46236 * 25 24 23 27 27 H 1.09000 * 109.46668 * 267.42824 * 1 2 3 28 28 H 1.08998 * 109.47464 * 27.43103 * 1 2 3 29 29 H 1.09000 * 109.47063 * 147.43126 * 1 2 3 30 30 H 1.08004 * 120.00121 * 359.97243 * 3 2 1 31 31 H 0.96997 * 119.99843 * 326.33964 * 5 4 3 32 32 H 1.08997 * 109.47216 * 90.00799 * 9 8 6 33 33 H 1.09000 * 109.47078 * 210.00490 * 9 8 6 34 34 H 1.08998 * 109.47435 * 330.00325 * 9 8 6 35 35 H 1.09000 * 109.46917 * 209.99752 * 10 8 6 36 36 H 1.09000 * 109.47098 * 329.99239 * 10 8 6 37 37 H 0.97003 * 120.00623 * 180.02562 * 14 13 11 38 38 H 1.08009 * 120.00282 * 179.97438 * 19 4 3 39 39 H 1.07996 * 120.00011 * 180.26822 * 20 19 4 40 40 H 1.08003 * 126.36339 * 359.97110 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1971 1.1956 0.0000 4 6 3.5858 1.1956 -0.0005 5 7 4.2860 2.4080 -0.0011 6 6 5.4645 2.5059 0.6454 7 8 5.8740 1.5720 1.3076 8 7 6.1891 3.6389 0.5579 9 6 5.6959 4.7639 -0.2404 10 6 7.4704 3.7450 1.2601 11 6 8.5786 3.2654 0.3586 12 1 8.3513 2.9168 -0.6380 13 6 9.8829 3.2727 0.8056 14 7 10.1598 3.6977 2.0190 15 14 11.2565 2.6775 -0.3117 16 1 11.2934 3.5128 -1.5389 17 1 12.5553 2.7852 0.4002 18 1 11.0129 1.2608 -0.6843 19 6 4.2801 -0.0075 -0.0005 20 6 3.5897 -1.2025 0.0052 21 6 2.2011 -1.2022 -0.0005 22 7 1.4993 -2.4174 -0.0016 23 6 1.7044 -3.4821 -0.8066 24 7 0.8293 -4.3948 -0.4740 25 7 0.0910 -3.9831 0.4928 26 7 0.4322 -2.7877 0.8357 27 1 -0.3633 -0.0461 1.0267 28 1 -0.3634 0.9121 -0.4734 29 1 -0.3633 -0.8661 -0.5532 30 1 1.6571 2.1309 -0.0005 31 1 3.9229 3.1775 -0.4667 32 1 5.0892 5.4165 0.3874 33 1 6.5412 5.3255 -0.6381 34 1 5.0902 4.3869 -1.0645 35 1 7.6494 4.7847 1.5343 36 1 7.4432 3.1314 2.1605 37 1 11.0774 3.7031 2.3334 38 1 5.3601 -0.0078 -0.0014 39 1 4.1294 -2.1379 0.0096 40 1 2.4498 -3.5629 -1.5841 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085557304.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:44 Heat of formation + Delta-G solvation = 134.830306 kcal Electronic energy + Delta-G solvation = -25362.538847 eV Core-core repulsion = 21602.103783 eV Total energy + Delta-G solvation = -3760.435064 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.33787 -40.65233 -39.15270 -35.99185 -34.98118 -33.94682 -33.05043 -32.56493 -32.26036 -29.56856 -27.81228 -27.41089 -26.06023 -24.72506 -23.49739 -23.18649 -22.36334 -21.51580 -19.57581 -18.61602 -18.06558 -16.95626 -16.79035 -16.63719 -16.27886 -15.54593 -15.10854 -14.83395 -14.48323 -14.29543 -14.23820 -13.57716 -13.51179 -13.35376 -13.22073 -13.00324 -12.66433 -12.40783 -12.29957 -12.19349 -12.07843 -11.71247 -11.36859 -11.30445 -11.19238 -11.02310 -10.67257 -10.64900 -10.27851 -10.12776 -9.80517 -9.53607 -9.08760 -8.53013 -8.24886 -7.80564 -6.14076 -4.19740 0.35702 1.03250 1.15787 1.66143 2.07938 2.86949 3.20216 3.24764 3.30266 3.32435 3.73573 3.92407 4.21100 4.33303 4.38670 4.40670 4.53581 4.76999 4.88116 5.11429 5.15008 5.18712 5.20606 5.28114 5.33099 5.34387 5.51852 5.58609 5.68828 5.80646 5.96860 6.06957 6.10479 6.23931 6.36651 6.58779 6.84536 7.18715 7.31641 7.46646 7.81963 8.10506 8.22285 8.33780 8.79175 8.99430 9.45775 10.93873 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.020703 B = 0.002807 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.121185 B = 9972.286763 C =10889.013932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.032 4.032 3 C -0.148 4.148 4 C 0.215 3.785 5 N -0.695 5.695 6 C 0.696 3.304 7 O -0.564 6.564 8 N -0.608 5.608 9 C 0.081 3.919 10 C 0.259 3.741 11 C -0.531 4.531 12 H 0.057 0.943 13 C 0.063 3.937 14 N -0.894 5.894 15 Si 0.899 3.101 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.276 1.276 19 C -0.112 4.112 20 C -0.074 4.074 21 C 0.072 3.928 22 N -0.315 5.315 23 C 0.226 3.774 24 N -0.338 5.338 25 N -0.047 5.047 26 N -0.076 5.076 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.138 0.862 31 H 0.406 0.594 32 H 0.047 0.953 33 H 0.081 0.919 34 H 0.051 0.949 35 H 0.036 0.964 36 H 0.046 0.954 37 H 0.265 0.735 38 H 0.156 0.844 39 H 0.136 0.864 40 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.922 -3.123 -8.560 19.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.035 4.035 3 C -0.170 4.170 4 C 0.116 3.884 5 N -0.344 5.344 6 C 0.397 3.603 7 O -0.439 6.439 8 N -0.343 5.343 9 C -0.064 4.064 10 C 0.140 3.860 11 C -0.570 4.570 12 H 0.075 0.925 13 C -0.140 4.140 14 N -0.532 5.532 15 Si 0.727 3.273 16 H -0.202 1.202 17 H -0.211 1.211 18 H -0.202 1.202 19 C -0.134 4.134 20 C -0.095 4.095 21 C -0.020 4.020 22 N -0.105 5.105 23 C -0.071 4.071 24 N -0.188 5.188 25 N -0.042 5.042 26 N -0.061 5.061 27 H 0.102 0.898 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.156 0.844 31 H 0.243 0.757 32 H 0.066 0.934 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.174 0.826 39 H 0.154 0.846 40 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -17.426 -4.212 -7.153 19.302 hybrid contribution 1.553 0.713 -1.252 2.119 sum -15.872 -3.499 -8.405 18.298 Atomic orbital electron populations 1.20792 0.89924 1.02667 1.03489 1.19441 0.96437 0.90457 0.97117 1.20624 0.91916 0.97791 1.06687 1.17703 0.90259 0.86024 0.94383 1.43139 1.22606 1.12217 1.56425 1.15937 0.79523 0.84400 0.80397 1.90929 1.70562 1.37880 1.44568 1.47548 1.22924 1.12373 1.51444 1.21642 1.00322 0.90057 0.94342 1.19302 0.76134 0.97846 0.92745 1.21372 0.91448 1.43695 1.00451 0.92488 1.24928 0.98705 0.95139 0.95225 1.69912 1.20108 1.46581 1.16607 0.86544 0.80912 0.79444 0.80427 1.20245 1.21118 1.20155 1.21235 1.02203 0.89557 1.00358 1.20881 0.90526 0.99496 0.98631 1.17210 0.90131 0.81208 1.13435 1.48899 1.24699 1.12827 1.24109 1.27497 0.99609 0.83389 0.96611 1.74468 1.06498 1.26235 1.11555 1.78059 1.17088 1.02944 1.06106 1.82731 1.01141 1.09213 1.13044 0.89825 0.90820 0.92052 0.84430 0.75708 0.93444 0.90020 0.93004 0.94617 0.93564 0.92516 0.82630 0.84634 0.74667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 9.01 36.00 0.32 -0.64 16 2 C -0.03 -0.32 5.89 -104.48 -0.62 -0.94 16 3 C -0.15 -1.48 9.60 -39.42 -0.38 -1.86 16 4 C 0.21 2.72 6.27 -83.64 -0.52 2.19 16 5 N -0.70 -9.34 5.17 -14.20 -0.07 -9.42 16 6 C 0.70 13.16 8.01 -86.93 -0.70 12.47 16 7 O -0.56 -13.04 13.62 5.29 0.07 -12.96 16 8 N -0.61 -11.70 2.86 -188.75 -0.54 -12.24 16 9 C 0.08 1.09 10.16 59.85 0.61 1.69 16 10 C 0.26 6.34 5.16 -5.19 -0.03 6.32 16 11 C -0.53 -14.21 9.39 -34.44 -0.32 -14.54 16 12 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 13 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 14 N -0.89 -25.57 13.29 55.43 0.74 -24.84 16 15 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 C -0.11 -1.51 8.65 -39.42 -0.34 -1.85 16 20 C -0.07 -0.82 9.69 -39.43 -0.38 -1.20 16 21 C 0.07 0.78 6.29 -83.52 -0.53 0.26 16 22 N -0.31 -3.47 3.10 -11.72 -0.04 -3.50 16 23 C 0.23 2.08 12.57 -90.17 -1.13 0.94 16 24 N -0.34 -4.12 12.15 29.64 0.36 -3.76 16 25 N -0.05 -0.65 13.39 60.35 0.81 0.16 16 26 N -0.08 -1.01 12.40 60.35 0.75 -0.26 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.48 8.07 -51.93 -0.42 0.06 16 29 H 0.06 0.59 7.07 -51.93 -0.37 0.22 16 30 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 31 H 0.41 4.02 6.63 -40.82 -0.27 3.75 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.08 1.16 8.07 -51.93 -0.42 0.74 16 34 H 0.05 0.53 6.45 -51.93 -0.33 0.19 16 35 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 36 H 0.05 1.29 7.42 -51.93 -0.39 0.91 16 37 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.16 2.52 6.43 -52.48 -0.34 2.18 16 39 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 40 H 0.24 0.98 8.06 -52.48 -0.42 0.56 16 LS Contribution 347.77 15.07 5.24 5.24 Total: -1.00 -33.99 347.77 -6.43 -40.42 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -4.61 Total: 0.78 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: -4.11 Total: 4.46 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: 2.00 Total: -53.86 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.07 Total: -12.96 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.99 -6.43 -40.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085557304.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.251 kcal (2) G-P(sol) polarization free energy of solvation -33.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds