Wall clock time and date at job start Tue Mar 31 2020 11:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29028 * 124.91584 * 2 1 4 4 C 1.31784 * 117.12534 * 180.02562 * 3 2 1 5 5 C 1.33639 * 114.50142 * 0.02562 * 4 3 2 6 6 C 1.50697 * 126.03916 * 180.02562 * 5 4 3 7 7 H 1.09001 * 109.47050 * 340.00520 * 6 5 4 8 8 C 1.53002 * 109.46957 * 99.99800 * 6 5 4 9 9 N 1.46891 * 109.47291 * 219.99923 * 6 5 4 10 10 C 1.46904 * 111.00126 * 154.99869 * 9 6 5 11 11 H 1.08998 * 109.46722 * 35.00548 * 10 9 6 12 12 C 1.52998 * 109.47123 * 155.00208 * 10 9 6 13 13 C 1.50704 * 109.47215 * 295.00238 * 12 10 9 14 14 H 1.08000 * 119.99607 * 0.02562 * 13 12 10 15 15 C 1.37872 * 119.99901 * 180.02562 * 13 12 10 16 16 N 1.31513 * 120.00231 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99967 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47042 * 59.99961 * 17 15 13 19 19 H 1.48506 * 109.47503 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47228 * 300.00010 * 17 15 13 21 21 C 1.50700 * 109.47349 * 275.00289 * 10 9 6 22 22 C 1.38231 * 119.99825 * 319.86570 * 21 10 9 23 23 C 1.38243 * 120.00070 * 180.02562 * 22 21 10 24 24 C 1.38235 * 119.99602 * 0.07188 * 23 22 21 25 25 C 1.38230 * 120.00326 * 359.97438 * 24 23 22 26 26 C 1.38234 * 120.00292 * 139.99708 * 21 10 9 27 27 S 1.70985 * 124.91894 * 180.32498 * 2 1 3 28 28 H 1.09003 * 109.47313 * 90.01974 * 1 2 3 29 29 H 1.09005 * 109.46671 * 210.01901 * 1 2 3 30 30 H 1.08992 * 109.46940 * 330.01718 * 1 2 3 31 31 H 1.08005 * 122.74886 * 180.02562 * 4 3 2 32 32 H 1.09004 * 109.47141 * 60.00569 * 8 6 5 33 33 H 1.09002 * 109.47011 * 180.02562 * 8 6 5 34 34 H 1.08993 * 109.47496 * 300.00549 * 8 6 5 35 35 H 1.00897 * 111.00352 * 278.95858 * 9 6 5 36 36 H 1.09007 * 109.47393 * 55.00270 * 12 10 9 37 37 H 1.09002 * 109.47408 * 175.00246 * 12 10 9 38 38 H 0.97003 * 120.00096 * 179.97438 * 16 15 13 39 39 H 1.08001 * 120.00367 * 0.10906 * 22 21 10 40 40 H 1.08000 * 119.99728 * 180.34119 * 23 22 21 41 41 H 1.08000 * 119.99297 * 179.97438 * 24 23 22 42 42 H 1.08001 * 120.00350 * 179.97438 * 25 24 23 43 43 H 1.08007 * 119.99474 * 359.97438 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 -0.0005 5 6 3.9355 -0.4006 -0.0015 6 6 5.3575 -0.8993 -0.0018 7 1 6.0200 -0.1080 -0.3524 8 6 5.7557 -1.3056 1.4186 9 7 5.4686 -2.0618 -0.8929 10 6 6.8426 -2.2150 -1.3896 11 1 7.5454 -1.9153 -0.6123 12 6 7.0894 -3.6779 -1.7638 13 6 7.0157 -4.5326 -0.5248 14 1 6.8126 -4.0780 0.4336 15 6 7.2074 -5.8950 -0.6147 16 7 7.4542 -6.4487 -1.7818 17 14 7.1168 -6.9544 0.9211 18 1 5.7713 -6.8213 1.5355 19 1 7.3562 -8.3743 0.5579 20 1 8.1499 -6.5100 1.8907 21 6 7.0372 -1.3459 -2.6052 22 6 6.0318 -1.2411 -3.5481 23 6 6.2105 -0.4443 -4.6635 24 6 7.3952 0.2466 -4.8367 25 6 8.4010 0.1411 -3.8943 26 6 8.2222 -0.6555 -2.7788 27 16 2.4857 -1.4020 -0.0080 28 1 -0.3634 -0.0004 -1.0277 29 1 -0.3633 -0.8899 0.5142 30 1 -0.3633 0.8901 0.5135 31 1 4.2532 1.7002 -0.0002 32 1 5.0932 -2.0970 1.7693 33 1 6.7844 -1.6660 1.4185 34 1 5.6732 -0.4432 2.0798 35 1 5.1550 -2.9025 -0.4314 36 1 6.3310 -4.0038 -2.4757 37 1 8.0770 -3.7760 -2.2146 38 1 7.5895 -7.4071 -1.8451 39 1 5.1061 -1.7808 -3.4127 40 1 5.4228 -0.3581 -5.3974 41 1 7.5349 0.8688 -5.7083 42 1 9.3268 0.6805 -4.0298 43 1 9.0084 -0.7388 -2.0430 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090666051.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:56 Heat of formation + Delta-G solvation = 54.738764 kcal Electronic energy + Delta-G solvation = -23832.075615 eV Core-core repulsion = 20582.167984 eV Total energy + Delta-G solvation = -3249.907631 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.59334 -38.98327 -36.83287 -33.80274 -32.35902 -31.36967 -30.42359 -29.36266 -27.89995 -27.36328 -24.66011 -23.82507 -22.21313 -21.89011 -21.67113 -19.81955 -19.02697 -17.65601 -16.63163 -16.11006 -15.58445 -15.05564 -14.85094 -14.70789 -14.50371 -14.20143 -13.79105 -13.66559 -13.24267 -12.93813 -12.88424 -12.81303 -12.40185 -12.35747 -12.25438 -12.06988 -11.85011 -11.44655 -11.16468 -11.11476 -10.83345 -10.75793 -10.62882 -10.53105 -10.38641 -9.66716 -9.46638 -9.25511 -8.99329 -8.58328 -8.48279 -8.42439 -8.11010 -7.88987 -6.09775 -4.14528 0.91031 1.54531 1.84598 1.90357 2.01525 2.98818 3.25470 3.31559 3.32469 4.24650 4.28643 4.37318 4.65605 5.04462 5.10603 5.26609 5.32462 5.33070 5.36348 5.37035 5.40356 5.43138 5.50035 5.65232 5.73906 5.76874 5.93251 5.98456 6.05293 6.09395 6.19926 6.31764 6.40761 6.41327 6.53103 6.66664 6.89972 6.96959 7.14710 7.37442 7.50281 7.54130 7.85334 7.89154 7.89206 8.04974 8.24408 8.90749 9.50288 11.00582 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.008584 B = 0.005499 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3261.252826 B = 5091.019219 C = 7414.371111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.014 3.986 3 N -0.475 5.475 4 C 0.018 3.982 5 C -0.179 4.179 6 C 0.157 3.843 7 H 0.091 0.909 8 C -0.176 4.176 9 N -0.673 5.673 10 C 0.129 3.871 11 H 0.045 0.955 12 C 0.029 3.971 13 C -0.528 4.528 14 H 0.053 0.947 15 C 0.065 3.935 16 N -0.887 5.887 17 Si 0.888 3.112 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.278 1.278 21 C -0.055 4.055 22 C -0.085 4.085 23 C -0.130 4.130 24 C -0.136 4.136 25 C -0.128 4.128 26 C -0.124 4.124 27 S 0.154 5.846 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.168 0.832 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.360 0.640 36 H 0.028 0.972 37 H 0.024 0.976 38 H 0.262 0.738 39 H 0.127 0.873 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.542 12.727 1.456 14.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.263 4.263 3 N -0.190 5.190 4 C -0.132 4.132 5 C -0.301 4.301 6 C 0.044 3.956 7 H 0.109 0.891 8 C -0.236 4.236 9 N -0.307 5.307 10 C 0.020 3.980 11 H 0.063 0.937 12 C -0.008 4.008 13 C -0.566 4.566 14 H 0.072 0.928 15 C -0.138 4.138 16 N -0.525 5.525 17 Si 0.716 3.284 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.203 1.203 21 C -0.056 4.056 22 C -0.104 4.104 23 C -0.148 4.148 24 C -0.154 4.154 25 C -0.146 4.146 26 C -0.142 4.142 27 S 0.408 5.592 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.185 0.815 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.183 0.817 36 H 0.047 0.953 37 H 0.042 0.958 38 H 0.072 0.928 39 H 0.145 0.855 40 H 0.130 0.870 41 H 0.129 0.871 42 H 0.131 0.869 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.223 12.310 0.803 14.826 hybrid contribution 1.192 -0.234 1.486 1.919 sum -7.031 12.076 2.289 14.160 Atomic orbital electron populations 1.20347 0.85780 1.03668 1.03508 1.26952 1.01629 0.92050 1.05715 1.66230 1.04824 1.31950 1.16002 1.21522 0.90982 0.95690 1.05045 1.26111 0.99741 0.95933 1.08353 1.19886 0.88360 0.95325 0.92069 0.89072 1.22519 1.02750 1.01611 0.96706 1.60572 1.23947 1.06496 1.39692 1.20657 0.87703 0.97739 0.91884 0.93712 1.19248 0.97864 0.86399 0.97280 1.21072 1.49832 0.92151 0.93576 0.92850 1.24954 0.95004 0.98076 0.95748 1.69948 1.47742 1.11433 1.23406 0.86720 0.78610 0.79602 0.83454 1.20139 1.21239 1.20321 1.20177 0.93226 0.95355 0.96857 1.21033 0.99320 0.97341 0.92679 1.21123 0.97350 0.98216 0.98099 1.20973 0.94424 1.00869 0.99180 1.20965 0.98695 0.99912 0.95002 1.21033 0.97413 0.97539 0.98220 1.84140 0.96916 1.11119 1.67032 0.90010 0.90423 0.89824 0.81493 0.92147 0.91185 0.92509 0.81693 0.95319 0.95754 0.92780 0.85532 0.86971 0.87120 0.86947 0.86685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.67 10.46 36.01 0.38 -0.29 16 2 C 0.01 0.18 7.39 -13.46 -0.10 0.08 16 3 N -0.47 -7.01 10.54 -11.86 -0.13 -7.14 16 4 C 0.02 0.26 11.24 -19.18 -0.22 0.05 16 5 C -0.18 -2.59 5.53 -35.92 -0.20 -2.79 16 6 C 0.16 2.33 2.85 -68.87 -0.20 2.13 16 7 H 0.09 1.36 7.63 -51.93 -0.40 0.96 16 8 C -0.18 -2.49 9.13 37.16 0.34 -2.15 16 9 N -0.67 -11.70 5.10 -102.18 -0.52 -12.22 16 10 C 0.13 2.47 2.01 -68.86 -0.14 2.34 16 11 H 0.04 0.86 6.98 -51.93 -0.36 0.50 16 12 C 0.03 0.70 4.55 -27.88 -0.13 0.58 16 13 C -0.53 -13.53 8.12 -34.44 -0.28 -13.81 16 14 H 0.05 1.31 7.49 -52.49 -0.39 0.91 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 16 N -0.89 -25.43 13.29 55.43 0.74 -24.69 16 17 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 C -0.06 -0.99 4.61 -104.63 -0.48 -1.47 16 22 C -0.09 -1.49 9.33 -39.58 -0.37 -1.86 16 23 C -0.13 -2.00 10.05 -39.58 -0.40 -2.40 16 24 C -0.14 -1.96 10.05 -39.59 -0.40 -2.36 16 25 C -0.13 -1.87 10.05 -39.59 -0.40 -2.27 16 26 C -0.12 -2.03 9.67 -39.58 -0.38 -2.41 16 27 S 0.15 2.09 22.97 -107.50 -2.47 -0.38 16 28 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.17 2.09 8.06 -52.48 -0.42 1.66 16 32 H 0.06 0.88 8.13 -51.93 -0.42 0.45 16 33 H 0.07 1.04 7.43 -51.93 -0.39 0.66 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.36 6.85 6.95 -39.29 -0.27 6.58 16 36 H 0.03 0.75 8.14 -51.92 -0.42 0.33 16 37 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.13 2.29 7.72 -52.49 -0.41 1.88 16 40 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 41 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 42 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 43 H 0.12 1.76 8.04 -52.48 -0.42 1.33 16 LS Contribution 372.98 15.07 5.62 5.62 Total: -1.00 -28.90 372.98 -11.26 -40.16 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -6.42 Total: 8.10 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: -3.06 Total: -24.98 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: 0.09 Total: -44.06 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -2.47 Total: -0.38 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -28.90 -11.26 -40.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090666051.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.899 kcal (2) G-P(sol) polarization free energy of solvation -28.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds