Wall clock time and date at job start Tue Mar 31 2020 11:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29028 * 124.91584 * 2 1 4 4 C 1.31784 * 117.12534 * 180.02562 * 3 2 1 5 5 C 1.33639 * 114.50142 * 0.02562 * 4 3 2 6 6 C 1.50697 * 126.03916 * 180.02562 * 5 4 3 7 7 H 1.09001 * 109.47050 * 340.00520 * 6 5 4 8 8 C 1.53002 * 109.46957 * 99.99800 * 6 5 4 9 9 N 1.46891 * 109.47291 * 219.99923 * 6 5 4 10 10 C 1.46904 * 111.00126 * 154.99869 * 9 6 5 11 11 H 1.08998 * 109.46722 * 35.00548 * 10 9 6 12 12 C 1.52998 * 109.47123 * 155.00208 * 10 9 6 13 13 C 1.50704 * 109.47215 * 295.00238 * 12 10 9 14 14 H 1.08000 * 119.99607 * 0.02562 * 13 12 10 15 15 C 1.37872 * 119.99901 * 180.02562 * 13 12 10 16 16 N 1.31513 * 120.00231 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99967 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47042 * 59.99961 * 17 15 13 19 19 H 1.48506 * 109.47503 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47228 * 300.00010 * 17 15 13 21 21 C 1.50700 * 109.47349 * 275.00289 * 10 9 6 22 22 C 1.38231 * 119.99825 * 319.86570 * 21 10 9 23 23 C 1.38243 * 120.00070 * 180.02562 * 22 21 10 24 24 C 1.38235 * 119.99602 * 0.07188 * 23 22 21 25 25 C 1.38230 * 120.00326 * 359.97438 * 24 23 22 26 26 C 1.38234 * 120.00292 * 139.99708 * 21 10 9 27 27 S 1.70985 * 124.91894 * 180.32498 * 2 1 3 28 28 H 1.09003 * 109.47313 * 90.01974 * 1 2 3 29 29 H 1.09005 * 109.46671 * 210.01901 * 1 2 3 30 30 H 1.08992 * 109.46940 * 330.01718 * 1 2 3 31 31 H 1.08005 * 122.74886 * 180.02562 * 4 3 2 32 32 H 1.09004 * 109.47141 * 60.00569 * 8 6 5 33 33 H 1.09002 * 109.47011 * 180.02562 * 8 6 5 34 34 H 1.08993 * 109.47496 * 300.00549 * 8 6 5 35 35 H 1.00897 * 111.00352 * 278.95858 * 9 6 5 36 36 H 1.09007 * 109.47393 * 55.00270 * 12 10 9 37 37 H 1.09002 * 109.47408 * 175.00246 * 12 10 9 38 38 H 0.97003 * 120.00096 * 179.97438 * 16 15 13 39 39 H 1.08001 * 120.00367 * 0.10906 * 22 21 10 40 40 H 1.08000 * 119.99728 * 180.34119 * 23 22 21 41 41 H 1.08000 * 119.99297 * 179.97438 * 24 23 22 42 42 H 1.08001 * 120.00350 * 179.97438 * 25 24 23 43 43 H 1.08007 * 119.99474 * 359.97438 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 -0.0005 5 6 3.9355 -0.4006 -0.0015 6 6 5.3575 -0.8993 -0.0018 7 1 6.0200 -0.1080 -0.3524 8 6 5.7557 -1.3056 1.4186 9 7 5.4686 -2.0618 -0.8929 10 6 6.8426 -2.2150 -1.3896 11 1 7.5454 -1.9153 -0.6123 12 6 7.0894 -3.6779 -1.7638 13 6 7.0157 -4.5326 -0.5248 14 1 6.8126 -4.0780 0.4336 15 6 7.2074 -5.8950 -0.6147 16 7 7.4542 -6.4487 -1.7818 17 14 7.1168 -6.9544 0.9211 18 1 5.7713 -6.8213 1.5355 19 1 7.3562 -8.3743 0.5579 20 1 8.1499 -6.5100 1.8907 21 6 7.0372 -1.3459 -2.6052 22 6 6.0318 -1.2411 -3.5481 23 6 6.2105 -0.4443 -4.6635 24 6 7.3952 0.2466 -4.8367 25 6 8.4010 0.1411 -3.8943 26 6 8.2222 -0.6555 -2.7788 27 16 2.4857 -1.4020 -0.0080 28 1 -0.3634 -0.0004 -1.0277 29 1 -0.3633 -0.8899 0.5142 30 1 -0.3633 0.8901 0.5135 31 1 4.2532 1.7002 -0.0002 32 1 5.0932 -2.0970 1.7693 33 1 6.7844 -1.6660 1.4185 34 1 5.6732 -0.4432 2.0798 35 1 5.1550 -2.9025 -0.4314 36 1 6.3310 -4.0038 -2.4757 37 1 8.0770 -3.7760 -2.2146 38 1 7.5895 -7.4071 -1.8451 39 1 5.1061 -1.7808 -3.4127 40 1 5.4228 -0.3581 -5.3974 41 1 7.5349 0.8688 -5.7083 42 1 9.3268 0.6805 -4.0298 43 1 9.0084 -0.7388 -2.0430 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090666051.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:55 Heat of formation + Delta-G solvation = 39.801605 kcal Electronic energy + Delta-G solvation = -23832.723339 eV Core-core repulsion = 20582.167984 eV Total energy + Delta-G solvation = -3250.555354 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.72207 -40.24817 -38.15157 -35.44885 -34.01207 -32.40218 -31.65668 -30.75916 -29.48627 -28.46450 -26.34550 -24.88726 -23.69898 -23.25376 -22.91649 -21.16415 -20.18286 -18.75908 -18.52791 -17.46402 -16.94013 -16.47122 -16.30440 -16.01507 -15.73060 -15.44940 -15.03292 -14.81677 -14.51936 -14.18364 -14.11047 -14.04992 -13.74435 -13.64173 -13.46208 -13.24176 -13.13653 -12.90919 -12.76044 -12.58456 -12.42241 -12.26598 -12.01970 -11.96527 -11.76507 -11.45170 -11.17093 -10.57110 -10.52881 -10.10208 -9.68974 -9.65746 -9.44628 -9.26447 -8.17563 -6.28664 -0.15481 0.48779 0.59249 0.65511 0.94458 1.41435 1.42321 1.49830 1.90542 2.40730 3.00490 3.13363 3.27300 3.41723 3.84021 4.09421 4.13348 4.15616 4.22494 4.27744 4.31497 4.41241 4.54514 4.60364 4.69397 4.70699 4.76568 4.80458 4.83311 4.88914 4.91932 5.04792 5.18229 5.22531 5.30062 5.32827 5.44923 5.51378 5.68017 5.72954 5.81894 5.86509 6.17806 6.26122 6.33596 6.52901 6.82553 6.85874 7.40428 8.93464 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.008584 B = 0.005499 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3261.252826 B = 5091.019219 C = 7414.371111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.024 3.976 3 N -0.498 5.498 4 C 0.019 3.981 5 C -0.196 4.196 6 C 0.164 3.836 7 H 0.092 0.908 8 C -0.170 4.170 9 N -0.672 5.672 10 C 0.146 3.854 11 H 0.042 0.958 12 C 0.042 3.958 13 C -0.530 4.530 14 H 0.064 0.936 15 C 0.009 3.991 16 N -0.929 5.929 17 Si 0.955 3.045 18 H -0.265 1.265 19 H -0.289 1.289 20 H -0.270 1.270 21 C -0.077 4.077 22 C -0.103 4.103 23 C -0.134 4.134 24 C -0.131 4.131 25 C -0.125 4.125 26 C -0.136 4.136 27 S 0.141 5.859 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.181 0.819 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.349 0.651 36 H -0.004 1.004 37 H -0.009 1.009 38 H 0.262 0.738 39 H 0.110 0.890 40 H 0.133 0.867 41 H 0.145 0.855 42 H 0.144 0.856 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.160 14.444 1.943 16.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.253 4.253 3 N -0.214 5.214 4 C -0.132 4.132 5 C -0.318 4.318 6 C 0.051 3.949 7 H 0.110 0.890 8 C -0.230 4.230 9 N -0.305 5.305 10 C 0.037 3.963 11 H 0.060 0.940 12 C 0.005 3.995 13 C -0.568 4.568 14 H 0.082 0.918 15 C -0.189 4.189 16 N -0.569 5.569 17 Si 0.780 3.220 18 H -0.190 1.190 19 H -0.214 1.214 20 H -0.195 1.195 21 C -0.078 4.078 22 C -0.122 4.122 23 C -0.152 4.152 24 C -0.149 4.149 25 C -0.143 4.143 26 C -0.155 4.155 27 S 0.396 5.604 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.112 0.888 31 H 0.198 0.802 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.170 0.830 36 H 0.015 0.985 37 H 0.009 0.991 38 H 0.071 0.929 39 H 0.128 0.872 40 H 0.151 0.849 41 H 0.163 0.837 42 H 0.161 0.839 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.842 14.052 1.303 16.653 hybrid contribution 1.339 -0.689 1.258 1.963 sum -7.503 13.363 2.561 15.537 Atomic orbital electron populations 1.20563 0.83042 1.05115 1.04801 1.27639 1.03148 0.91131 1.03387 1.66311 1.05056 1.32549 1.17476 1.21775 0.91319 0.95954 1.04145 1.25972 0.99509 0.96247 1.10031 1.19812 0.89046 0.94092 0.91921 0.89019 1.22445 1.01769 1.02188 0.96551 1.60553 1.22631 1.06729 1.40562 1.20286 0.88611 0.94752 0.92697 0.93997 1.19001 0.94782 0.89853 0.95896 1.21441 1.48497 0.92508 0.94392 0.91795 1.25820 0.94805 0.99655 0.98649 1.70097 1.49410 1.11620 1.25754 0.85657 0.79144 0.77464 0.79738 1.18963 1.21423 1.19478 1.20105 0.94471 0.96515 0.96711 1.21005 0.98810 0.98457 0.93914 1.21397 0.98633 0.97547 0.97602 1.21389 0.93442 1.00168 0.99904 1.21339 0.99973 0.99009 0.93952 1.21221 0.96891 0.97963 0.99394 1.84174 0.97101 1.11793 1.67337 0.88645 0.88495 0.88823 0.80168 0.92727 0.92251 0.90519 0.83042 0.98546 0.99105 0.92930 0.87228 0.84916 0.83719 0.83870 0.86124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.20 10.46 71.24 0.75 -0.46 16 2 C 0.02 0.59 7.39 88.52 0.65 1.25 16 3 N -0.50 -14.07 10.54 -191.43 -2.02 -16.09 16 4 C 0.02 0.52 11.24 83.66 0.94 1.46 16 5 C -0.20 -5.59 5.53 24.64 0.14 -5.45 16 6 C 0.16 4.88 2.85 44.17 0.13 5.01 16 7 H 0.09 2.72 7.63 -2.39 -0.02 2.70 16 8 C -0.17 -4.73 9.13 71.98 0.66 -4.07 16 9 N -0.67 -24.14 5.10 -477.17 -2.44 -26.57 16 10 C 0.15 5.81 2.01 44.17 0.09 5.90 16 11 H 0.04 1.66 6.98 -2.39 -0.02 1.65 16 12 C 0.04 2.13 4.55 29.85 0.14 2.27 16 13 C -0.53 -27.95 8.12 25.60 0.21 -27.74 16 14 H 0.06 3.17 7.49 -2.91 -0.02 3.15 16 15 C 0.01 0.51 5.46 84.65 0.46 0.97 16 16 N -0.93 -55.09 13.29 21.45 0.28 -54.80 16 17 Si 0.95 42.61 29.54 68.60 2.03 44.63 16 18 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 19 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 20 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 21 C -0.08 -2.83 4.61 -19.87 -0.09 -2.92 16 22 C -0.10 -3.68 9.33 22.27 0.21 -3.47 16 23 C -0.13 -3.96 10.05 22.27 0.22 -3.73 16 24 C -0.13 -3.41 10.05 22.27 0.22 -3.19 16 25 C -0.12 -3.38 10.05 22.27 0.22 -3.15 16 26 C -0.14 -4.41 9.67 22.27 0.22 -4.19 16 27 S 0.14 3.79 22.97 -56.49 -1.30 2.49 16 28 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.10 1.18 8.14 -2.38 -0.02 1.17 16 30 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.18 4.29 8.06 -2.91 -0.02 4.26 16 32 H 0.05 1.57 8.13 -2.38 -0.02 1.55 16 33 H 0.06 1.76 7.43 -2.39 -0.02 1.74 16 34 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.35 13.75 6.95 -89.70 -0.62 13.13 16 36 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 16 37 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 38 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 39 H 0.11 4.17 7.72 -2.91 -0.02 4.15 16 40 H 0.13 3.28 8.06 -2.91 -0.02 3.26 16 41 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 42 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16 43 H 0.12 3.66 8.04 -2.91 -0.02 3.63 16 Total: -1.00 -63.90 372.98 2.09 -61.81 By element: Atomic # 1 Polarization: 29.67 SS G_CDS: 0.38 Total: 30.05 kcal Atomic # 6 Polarization: -46.68 SS G_CDS: 5.16 Total: -41.52 kcal Atomic # 7 Polarization: -93.29 SS G_CDS: -4.17 Total: -97.46 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 16 Polarization: 3.79 SS G_CDS: -1.30 Total: 2.49 kcal Total: -63.90 2.09 -61.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090666051.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.611 kcal (2) G-P(sol) polarization free energy of solvation -63.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds