Wall clock time and date at job start Tue Mar 31 2020 11:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29026 * 124.91555 * 2 1 4 4 C 1.31777 * 117.12787 * 179.97438 * 3 2 1 5 5 C 1.33638 * 114.50134 * 0.02562 * 4 3 2 6 6 C 1.50697 * 126.04066 * 179.97438 * 5 4 3 7 7 H 1.08996 * 109.47282 * 340.00058 * 6 5 4 8 8 C 1.53001 * 109.47167 * 100.00432 * 6 5 4 9 9 N 1.46899 * 109.47374 * 220.00280 * 6 5 4 10 10 C 1.46903 * 111.00407 * 154.99955 * 9 6 5 11 11 H 1.09001 * 109.46749 * 325.00284 * 10 9 6 12 12 C 1.52998 * 109.47199 * 204.99823 * 10 9 6 13 13 C 1.50699 * 109.47053 * 65.00143 * 12 10 9 14 14 H 1.08004 * 119.99695 * 359.97438 * 13 12 10 15 15 C 1.37875 * 120.00251 * 179.97438 * 13 12 10 16 16 N 1.31515 * 120.00366 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 119.99722 * 359.97438 * 15 13 12 18 18 H 1.48510 * 109.47197 * 90.00062 * 17 15 13 19 19 H 1.48500 * 109.47145 * 209.99631 * 17 15 13 20 20 H 1.48503 * 109.47272 * 330.00162 * 17 15 13 21 21 C 1.50702 * 109.46915 * 84.99732 * 10 9 6 22 22 C 1.38234 * 119.99895 * 39.73135 * 21 10 9 23 23 C 1.38240 * 120.00061 * 180.34228 * 22 21 10 24 24 C 1.38234 * 119.99667 * 359.88520 * 23 22 21 25 25 C 1.38234 * 120.00244 * 0.09088 * 24 23 22 26 26 C 1.38230 * 119.99880 * 359.97438 * 25 24 23 27 27 S 1.70979 * 124.91918 * 180.31626 * 2 1 3 28 28 H 1.08998 * 109.47527 * 90.02840 * 1 2 3 29 29 H 1.09009 * 109.47066 * 210.02301 * 1 2 3 30 30 H 1.08995 * 109.47630 * 330.01929 * 1 2 3 31 31 H 1.07997 * 122.75307 * 179.97438 * 4 3 2 32 32 H 1.08996 * 109.47325 * 59.99653 * 8 6 5 33 33 H 1.08997 * 109.47452 * 180.02562 * 8 6 5 34 34 H 1.09002 * 109.46889 * 299.99737 * 8 6 5 35 35 H 1.00898 * 111.00485 * 31.04367 * 9 6 5 36 36 H 1.08998 * 109.46578 * 184.99959 * 12 10 9 37 37 H 1.08991 * 109.47306 * 305.00165 * 12 10 9 38 38 H 0.96995 * 120.00515 * 180.02562 * 16 15 13 39 39 H 1.08001 * 120.00279 * 0.27436 * 22 21 10 40 40 H 1.07996 * 119.99812 * 180.02562 * 23 22 21 41 41 H 1.07999 * 119.99733 * 180.10835 * 24 23 22 42 42 H 1.08001 * 119.99769 * 180.02562 * 25 24 23 43 43 H 1.08000 * 120.00376 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8795 0.0005 5 6 3.9354 -0.4005 0.0004 6 6 5.3574 -0.8992 0.0004 7 1 6.0199 -0.1082 -0.3510 8 6 5.7558 -1.3046 1.4210 9 7 5.4685 -2.0623 -0.8899 10 6 6.8424 -2.2160 -1.3867 11 1 7.2873 -1.2320 -1.5348 12 6 6.8223 -2.9722 -2.7166 13 6 6.1132 -2.1424 -3.7556 14 1 5.7162 -1.1728 -3.4934 15 6 5.9713 -2.6209 -5.0408 16 7 5.3529 -1.8966 -5.9478 17 14 6.6587 -4.2976 -5.4943 18 1 5.6243 -5.3369 -5.2587 19 1 7.0473 -4.3021 -6.9276 20 1 7.8507 -4.5868 -4.6573 21 6 7.6565 -2.9891 -0.3814 22 6 7.0949 -4.0632 0.2834 23 6 7.8394 -4.7680 1.2108 24 6 9.1461 -4.4002 1.4715 25 6 9.7078 -3.3265 0.8064 26 6 8.9630 -2.6209 -0.1199 27 16 2.4857 -1.4019 -0.0077 28 1 -0.3634 -0.0005 -1.0276 29 1 -0.3634 -0.8899 0.5142 30 1 -0.3634 0.8901 0.5135 31 1 4.2530 1.7002 0.0002 32 1 5.0933 -2.0956 1.7724 33 1 6.7845 -1.6649 1.4211 34 1 5.6735 -0.4415 2.0816 35 1 4.8129 -1.9967 -1.6542 36 1 7.8451 -3.1640 -3.0408 37 1 6.2982 -3.9191 -2.5882 38 1 5.2527 -2.2333 -6.8518 39 1 6.0742 -4.3510 0.0792 40 1 7.4008 -5.6074 1.7298 41 1 9.7283 -4.9519 2.1947 42 1 10.7289 -3.0394 1.0099 43 1 9.4019 -1.7822 -0.6400 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090666053.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:02 Heat of formation + Delta-G solvation = 60.586313 kcal Electronic energy + Delta-G solvation = -23891.952886 eV Core-core repulsion = 20642.298824 eV Total energy + Delta-G solvation = -3249.654062 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 3.12 seconds Orbital eigenvalues (eV) -39.63392 -39.13429 -36.74261 -33.84232 -32.34531 -31.29675 -30.52821 -29.78978 -28.29314 -27.41500 -24.75397 -23.74970 -22.29638 -21.70373 -21.42233 -19.79125 -19.00959 -17.70863 -17.05486 -16.29078 -15.58933 -15.08484 -14.99698 -14.76179 -14.49070 -14.25361 -13.84607 -13.55279 -13.26692 -13.00628 -12.90418 -12.72626 -12.59292 -12.44302 -12.28215 -12.05827 -11.93422 -11.47538 -11.24881 -11.21631 -11.05986 -10.80686 -10.70018 -10.38385 -10.02177 -9.81811 -9.43136 -9.31043 -8.99706 -8.63310 -8.56147 -8.54449 -8.20361 -8.01124 -6.13483 -4.13566 0.89603 1.53748 1.72599 1.77940 2.00334 3.00544 3.26694 3.34667 3.38930 4.15600 4.28983 4.38169 4.59613 4.94769 5.13021 5.21604 5.23024 5.26005 5.31269 5.41117 5.44364 5.49542 5.54898 5.59806 5.76473 5.81516 5.87303 5.92307 6.03408 6.08045 6.14647 6.27775 6.34135 6.38594 6.45814 6.48779 6.78549 6.84326 7.03098 7.07743 7.15147 7.37362 7.65027 7.69833 7.89491 8.00266 8.38146 8.86899 9.48248 10.99033 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.008725 B = 0.005638 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3208.429319 B = 4965.123854 C = 7359.694393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.020 3.980 3 N -0.476 5.476 4 C 0.031 3.969 5 C -0.211 4.211 6 C 0.161 3.839 7 H 0.061 0.939 8 C -0.135 4.135 9 N -0.675 5.675 10 C 0.137 3.863 11 H 0.050 0.950 12 C -0.009 4.009 13 C -0.527 4.527 14 H 0.070 0.930 15 C 0.073 3.927 16 N -0.897 5.897 17 Si 0.878 3.122 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.265 1.265 21 C -0.055 4.055 22 C -0.088 4.088 23 C -0.130 4.130 24 C -0.136 4.136 25 C -0.126 4.126 26 C -0.124 4.124 27 S 0.162 5.838 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.170 0.830 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.049 0.951 35 H 0.365 0.635 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.264 0.736 39 H 0.128 0.872 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.739 -0.909 15.889 16.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.257 4.257 3 N -0.191 5.191 4 C -0.121 4.121 5 C -0.333 4.333 6 C 0.049 3.951 7 H 0.079 0.921 8 C -0.193 4.193 9 N -0.310 5.310 10 C 0.027 3.973 11 H 0.068 0.932 12 C -0.046 4.046 13 C -0.565 4.565 14 H 0.088 0.912 15 C -0.129 4.129 16 N -0.535 5.535 17 Si 0.705 3.295 18 H -0.201 1.201 19 H -0.214 1.214 20 H -0.189 1.189 21 C -0.055 4.055 22 C -0.107 4.107 23 C -0.148 4.148 24 C -0.154 4.154 25 C -0.144 4.144 26 C -0.143 4.143 27 S 0.417 5.583 28 H 0.102 0.898 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.187 0.813 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.188 0.812 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.074 0.926 39 H 0.146 0.854 40 H 0.131 0.869 41 H 0.129 0.871 42 H 0.131 0.869 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.232 -1.897 16.172 16.435 hybrid contribution 1.110 0.675 -1.139 1.728 sum -1.122 -1.222 15.033 15.124 Atomic orbital electron populations 1.20374 0.85644 1.03673 1.03752 1.27029 1.01773 0.92103 1.04838 1.66242 1.04790 1.31959 1.16122 1.21599 0.91089 0.95757 1.03636 1.26174 1.00136 0.96280 1.10662 1.19957 0.87434 0.92340 0.95366 0.92136 1.21897 1.02390 1.00789 0.94205 1.60676 1.07338 1.38821 1.24189 1.20483 0.86881 0.97227 0.92690 0.93239 1.19738 0.97615 0.96347 0.90921 1.21000 1.37001 1.04602 0.93900 0.91196 1.24961 0.94408 0.97183 0.96339 1.69907 1.42308 1.37741 1.03589 0.86804 0.80238 0.84837 0.77607 1.20137 1.21427 1.18933 1.20167 0.93711 0.95740 0.95922 1.21053 1.00124 0.94453 0.95026 1.21128 0.94587 0.99985 0.99077 1.20992 0.95693 0.97993 1.00733 1.20987 0.99367 0.96520 0.97567 1.21057 0.94397 1.00435 0.98379 1.84058 0.96472 1.10876 1.66925 0.89758 0.90383 0.89724 0.81280 0.92203 0.91444 0.93243 0.81221 0.95754 0.95804 0.92615 0.85382 0.86850 0.87059 0.86869 0.86557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 10.46 36.00 0.38 -0.36 16 2 C 0.02 0.27 7.39 -13.46 -0.10 0.17 16 3 N -0.48 -7.55 10.54 -11.87 -0.13 -7.68 16 4 C 0.03 0.47 11.24 -19.19 -0.22 0.26 16 5 C -0.21 -3.22 5.21 -35.92 -0.19 -3.40 16 6 C 0.16 2.47 3.07 -68.87 -0.21 2.25 16 7 H 0.06 0.96 7.42 -51.93 -0.39 0.57 16 8 C -0.13 -1.83 8.82 37.16 0.33 -1.50 16 9 N -0.67 -11.76 5.24 -102.17 -0.54 -12.29 16 10 C 0.14 2.56 2.19 -68.86 -0.15 2.41 16 11 H 0.05 0.96 7.29 -51.93 -0.38 0.58 16 12 C -0.01 -0.19 3.62 -27.88 -0.10 -0.30 16 13 C -0.53 -14.05 8.67 -34.44 -0.30 -14.35 16 14 H 0.07 2.01 7.73 -52.48 -0.41 1.60 16 15 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 16 N -0.90 -26.79 13.96 55.43 0.77 -26.02 16 17 Si 0.88 21.27 27.47 -169.99 -4.67 16.60 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 21 C -0.05 -0.90 2.95 -104.62 -0.31 -1.21 16 22 C -0.09 -1.37 8.59 -39.58 -0.34 -1.71 16 23 C -0.13 -1.76 10.05 -39.58 -0.40 -2.16 16 24 C -0.14 -1.75 10.05 -39.58 -0.40 -2.15 16 25 C -0.13 -1.69 10.05 -39.59 -0.40 -2.09 16 26 C -0.12 -1.89 9.65 -39.59 -0.38 -2.27 16 27 S 0.16 2.28 22.80 -107.50 -2.45 -0.17 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.08 0.61 8.14 -51.92 -0.42 0.18 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.17 2.29 8.06 -52.49 -0.42 1.86 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.95 5.93 -51.93 -0.31 0.65 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.36 7.28 6.66 -39.29 -0.26 7.02 16 36 H 0.02 0.57 7.20 -51.93 -0.37 0.20 16 37 H 0.02 0.55 7.57 -51.93 -0.39 0.15 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.13 2.04 7.71 -52.49 -0.40 1.64 16 40 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 41 H 0.11 1.16 8.06 -52.49 -0.42 0.74 16 42 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 43 H 0.12 1.67 8.04 -52.49 -0.42 1.25 16 LS Contribution 365.05 15.07 5.50 5.50 Total: -1.00 -29.91 365.05 -10.69 -40.60 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -6.30 Total: 7.89 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: -2.88 Total: -24.44 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: 0.11 Total: -45.98 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Atomic # 16 Polarization: 2.28 SS G_CDS: -2.45 Total: -0.17 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.91 -10.69 -40.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090666053.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.189 kcal (2) G-P(sol) polarization free energy of solvation -29.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.12 seconds