Wall clock time and date at job start Tue Mar 31 2020 11:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29026 * 124.91555 * 2 1 4 4 C 1.31777 * 117.12787 * 179.97438 * 3 2 1 5 5 C 1.33638 * 114.50134 * 0.02562 * 4 3 2 6 6 C 1.50697 * 126.04066 * 179.97438 * 5 4 3 7 7 H 1.08996 * 109.47282 * 340.00058 * 6 5 4 8 8 C 1.53001 * 109.47167 * 100.00432 * 6 5 4 9 9 N 1.46899 * 109.47374 * 220.00280 * 6 5 4 10 10 C 1.46903 * 111.00407 * 154.99955 * 9 6 5 11 11 H 1.09001 * 109.46749 * 325.00284 * 10 9 6 12 12 C 1.52998 * 109.47199 * 204.99823 * 10 9 6 13 13 C 1.50699 * 109.47053 * 65.00143 * 12 10 9 14 14 H 1.08004 * 119.99695 * 359.97438 * 13 12 10 15 15 C 1.37875 * 120.00251 * 179.97438 * 13 12 10 16 16 N 1.31515 * 120.00366 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 119.99722 * 359.97438 * 15 13 12 18 18 H 1.48510 * 109.47197 * 90.00062 * 17 15 13 19 19 H 1.48500 * 109.47145 * 209.99631 * 17 15 13 20 20 H 1.48503 * 109.47272 * 330.00162 * 17 15 13 21 21 C 1.50702 * 109.46915 * 84.99732 * 10 9 6 22 22 C 1.38234 * 119.99895 * 39.73135 * 21 10 9 23 23 C 1.38240 * 120.00061 * 180.34228 * 22 21 10 24 24 C 1.38234 * 119.99667 * 359.88520 * 23 22 21 25 25 C 1.38234 * 120.00244 * 0.09088 * 24 23 22 26 26 C 1.38230 * 119.99880 * 359.97438 * 25 24 23 27 27 S 1.70979 * 124.91918 * 180.31626 * 2 1 3 28 28 H 1.08998 * 109.47527 * 90.02840 * 1 2 3 29 29 H 1.09009 * 109.47066 * 210.02301 * 1 2 3 30 30 H 1.08995 * 109.47630 * 330.01929 * 1 2 3 31 31 H 1.07997 * 122.75307 * 179.97438 * 4 3 2 32 32 H 1.08996 * 109.47325 * 59.99653 * 8 6 5 33 33 H 1.08997 * 109.47452 * 180.02562 * 8 6 5 34 34 H 1.09002 * 109.46889 * 299.99737 * 8 6 5 35 35 H 1.00898 * 111.00485 * 31.04367 * 9 6 5 36 36 H 1.08998 * 109.46578 * 184.99959 * 12 10 9 37 37 H 1.08991 * 109.47306 * 305.00165 * 12 10 9 38 38 H 0.96995 * 120.00515 * 180.02562 * 16 15 13 39 39 H 1.08001 * 120.00279 * 0.27436 * 22 21 10 40 40 H 1.07996 * 119.99812 * 180.02562 * 23 22 21 41 41 H 1.07999 * 119.99733 * 180.10835 * 24 23 22 42 42 H 1.08001 * 119.99769 * 180.02562 * 25 24 23 43 43 H 1.08000 * 120.00376 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8795 0.0005 5 6 3.9354 -0.4005 0.0004 6 6 5.3574 -0.8992 0.0004 7 1 6.0199 -0.1082 -0.3510 8 6 5.7558 -1.3046 1.4210 9 7 5.4685 -2.0623 -0.8899 10 6 6.8424 -2.2160 -1.3867 11 1 7.2873 -1.2320 -1.5348 12 6 6.8223 -2.9722 -2.7166 13 6 6.1132 -2.1424 -3.7556 14 1 5.7162 -1.1728 -3.4934 15 6 5.9713 -2.6209 -5.0408 16 7 5.3529 -1.8966 -5.9478 17 14 6.6587 -4.2976 -5.4943 18 1 5.6243 -5.3369 -5.2587 19 1 7.0473 -4.3021 -6.9276 20 1 7.8507 -4.5868 -4.6573 21 6 7.6565 -2.9891 -0.3814 22 6 7.0949 -4.0632 0.2834 23 6 7.8394 -4.7680 1.2108 24 6 9.1461 -4.4002 1.4715 25 6 9.7078 -3.3265 0.8064 26 6 8.9630 -2.6209 -0.1199 27 16 2.4857 -1.4019 -0.0077 28 1 -0.3634 -0.0005 -1.0276 29 1 -0.3634 -0.8899 0.5142 30 1 -0.3634 0.8901 0.5135 31 1 4.2530 1.7002 0.0002 32 1 5.0933 -2.0956 1.7724 33 1 6.7845 -1.6649 1.4211 34 1 5.6735 -0.4415 2.0816 35 1 4.8129 -1.9967 -1.6542 36 1 7.8451 -3.1640 -3.0408 37 1 6.2982 -3.9191 -2.5882 38 1 5.2527 -2.2333 -6.8518 39 1 6.0742 -4.3510 0.0792 40 1 7.4008 -5.6074 1.7298 41 1 9.7283 -4.9519 2.1947 42 1 10.7289 -3.0394 1.0099 43 1 9.4019 -1.7822 -0.6400 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090666053.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:01 Heat of formation + Delta-G solvation = 43.870212 kcal Electronic energy + Delta-G solvation = -23892.677750 eV Core-core repulsion = 20642.298824 eV Total energy + Delta-G solvation = -3250.378926 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.82401 -40.31789 -38.03065 -35.47148 -34.10333 -32.38689 -31.62082 -31.12937 -29.87076 -28.52589 -26.31899 -24.89449 -23.48101 -23.23742 -22.63706 -21.12221 -20.23502 -19.12669 -18.80108 -17.47944 -16.95241 -16.44415 -16.25208 -16.16246 -15.83168 -15.58337 -15.06139 -14.85506 -14.62330 -14.32713 -14.06493 -14.02875 -13.83642 -13.71918 -13.51728 -13.28161 -13.15901 -12.86740 -12.75161 -12.51129 -12.36434 -12.21480 -12.07942 -11.82597 -11.72786 -11.52594 -11.28364 -10.78935 -10.57812 -10.17067 -9.69074 -9.66192 -9.46181 -9.36386 -8.30945 -6.34698 -0.25067 0.40775 0.60831 0.67835 0.84898 1.34017 1.35860 1.46985 1.82606 2.33637 2.98543 3.05433 3.22122 3.33235 3.72102 4.04573 4.13649 4.16336 4.29386 4.33015 4.33833 4.45021 4.50966 4.57157 4.66044 4.67274 4.69835 4.78537 4.85678 4.89550 4.96502 5.02272 5.16039 5.24305 5.26988 5.29105 5.33375 5.36128 5.58238 5.72952 5.77236 5.85744 6.18694 6.25834 6.29210 6.41775 6.70707 6.76005 7.30059 8.84842 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.008725 B = 0.005638 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3208.429319 B = 4965.123854 C = 7359.694393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.023 3.977 3 N -0.503 5.503 4 C 0.022 3.978 5 C -0.230 4.230 6 C 0.165 3.835 7 H 0.050 0.950 8 C -0.121 4.121 9 N -0.668 5.668 10 C 0.146 3.854 11 H 0.032 0.968 12 C -0.001 4.001 13 C -0.522 4.522 14 H 0.034 0.966 15 C 0.015 3.985 16 N -0.945 5.945 17 Si 0.942 3.058 18 H -0.267 1.267 19 H -0.286 1.286 20 H -0.252 1.252 21 C -0.071 4.071 22 C -0.099 4.099 23 C -0.129 4.129 24 C -0.129 4.129 25 C -0.125 4.125 26 C -0.137 4.137 27 S 0.168 5.832 28 H 0.092 0.908 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.179 0.821 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.346 0.654 36 H 0.019 0.981 37 H 0.024 0.976 38 H 0.265 0.735 39 H 0.118 0.882 40 H 0.138 0.862 41 H 0.144 0.856 42 H 0.140 0.860 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.981 -2.834 18.030 18.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.254 4.254 3 N -0.219 5.219 4 C -0.129 4.129 5 C -0.351 4.351 6 C 0.053 3.947 7 H 0.068 0.932 8 C -0.179 4.179 9 N -0.301 5.301 10 C 0.037 3.963 11 H 0.050 0.950 12 C -0.038 4.038 13 C -0.560 4.560 14 H 0.053 0.947 15 C -0.183 4.183 16 N -0.585 5.585 17 Si 0.767 3.233 18 H -0.192 1.192 19 H -0.212 1.212 20 H -0.176 1.176 21 C -0.072 4.072 22 C -0.118 4.118 23 C -0.147 4.147 24 C -0.147 4.147 25 C -0.142 4.142 26 C -0.156 4.156 27 S 0.423 5.577 28 H 0.111 0.889 29 H 0.121 0.879 30 H 0.113 0.887 31 H 0.196 0.804 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.167 0.833 36 H 0.037 0.963 37 H 0.042 0.958 38 H 0.074 0.926 39 H 0.136 0.864 40 H 0.156 0.844 41 H 0.162 0.838 42 H 0.157 0.843 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.458 -3.826 18.347 18.798 hybrid contribution 0.837 1.345 -1.747 2.358 sum -0.620 -2.481 16.600 16.796 Atomic orbital electron populations 1.20597 0.82802 1.05450 1.04773 1.27767 1.03438 0.91443 1.02729 1.66308 1.05010 1.32854 1.17701 1.21840 0.91496 0.96201 1.03382 1.26172 1.00454 0.96680 1.11828 1.19947 0.87646 0.91273 0.95859 0.93236 1.21772 1.01941 1.01278 0.92942 1.60764 1.06167 1.39920 1.23231 1.20236 0.87900 0.96238 0.91966 0.94964 1.19602 0.96336 0.95969 0.91924 1.21234 1.36221 1.03555 0.94944 0.94737 1.25828 0.94930 1.01126 0.96385 1.70051 1.44426 1.39926 1.04122 0.85776 0.80054 0.80170 0.77349 1.19177 1.21232 1.17620 1.19908 0.94163 0.96577 0.96569 1.21035 1.00056 0.94701 0.95963 1.21409 0.94883 1.00149 0.98214 1.21397 0.95480 0.97425 1.00420 1.21302 1.00375 0.96114 0.96448 1.21180 0.94093 1.01026 0.99303 1.83956 0.95965 1.10907 1.66835 0.88933 0.87884 0.88663 0.80384 0.92184 0.91828 0.91830 0.83348 0.96263 0.95814 0.92566 0.86377 0.84433 0.83841 0.84255 0.86648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.38 10.46 71.23 0.75 -0.64 16 2 C 0.02 0.63 7.39 88.52 0.65 1.29 16 3 N -0.50 -15.99 10.54 -191.46 -2.02 -18.01 16 4 C 0.02 0.70 11.24 83.66 0.94 1.64 16 5 C -0.23 -7.17 5.21 24.64 0.13 -7.04 16 6 C 0.16 5.18 3.07 44.17 0.14 5.32 16 7 H 0.05 1.66 7.42 -2.39 -0.02 1.64 16 8 C -0.12 -3.23 8.82 71.98 0.64 -2.60 16 9 N -0.67 -24.06 5.24 -477.16 -2.50 -26.56 16 10 C 0.15 5.63 2.19 44.17 0.10 5.73 16 11 H 0.03 1.33 7.29 -2.39 -0.02 1.31 16 12 C 0.00 -0.03 3.62 29.85 0.11 0.08 16 13 C -0.52 -28.85 8.67 25.60 0.22 -28.63 16 14 H 0.03 2.10 7.73 -2.91 -0.02 2.08 16 15 C 0.02 0.86 5.47 84.65 0.46 1.32 16 16 N -0.94 -58.25 13.96 21.45 0.30 -57.95 16 17 Si 0.94 44.17 27.47 68.60 1.88 46.05 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 19 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 20 H -0.25 -11.23 6.54 99.48 0.65 -10.57 16 21 C -0.07 -2.33 2.95 -19.87 -0.06 -2.38 16 22 C -0.10 -2.95 8.59 22.27 0.19 -2.76 16 23 C -0.13 -3.10 10.05 22.27 0.22 -2.87 16 24 C -0.13 -2.81 10.05 22.27 0.22 -2.59 16 25 C -0.12 -2.94 10.05 22.27 0.22 -2.72 16 26 C -0.14 -4.01 9.65 22.27 0.21 -3.79 16 27 S 0.17 4.73 22.80 -56.49 -1.29 3.44 16 28 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 30 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.18 4.99 8.06 -2.91 -0.02 4.97 16 32 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.06 1.75 5.93 -2.39 -0.01 1.74 16 34 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.35 14.53 6.66 -89.70 -0.60 13.94 16 36 H 0.02 0.90 7.20 -2.39 -0.02 0.88 16 37 H 0.02 1.09 7.57 -2.39 -0.02 1.07 16 38 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 39 H 0.12 3.69 7.71 -2.91 -0.02 3.67 16 40 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 41 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16 42 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 43 H 0.12 3.28 8.04 -2.91 -0.02 3.26 16 Total: -1.00 -66.10 365.05 1.88 -64.22 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: 0.35 Total: 29.47 kcal Atomic # 6 Polarization: -45.81 SS G_CDS: 5.15 Total: -40.66 kcal Atomic # 7 Polarization: -98.31 SS G_CDS: -4.22 Total: -102.52 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.88 Total: 46.05 kcal Atomic # 16 Polarization: 4.73 SS G_CDS: -1.29 Total: 3.44 kcal Total: -66.10 1.88 -64.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090666053.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.090 kcal (2) G-P(sol) polarization free energy of solvation -66.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds