Wall clock time and date at job start Tue Mar 31 2020 11:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29034 * 124.91509 * 2 1 4 4 C 1.31774 * 117.12480 * 179.97438 * 3 2 1 5 5 C 1.33641 * 114.50001 * 0.02562 * 4 3 2 6 6 C 1.50703 * 126.03640 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.47473 * 20.01744 * 6 5 4 8 8 C 1.53002 * 109.47264 * 260.01548 * 6 5 4 9 9 N 1.46904 * 109.46797 * 140.01633 * 6 5 4 10 10 C 1.46901 * 110.99731 * 204.99952 * 9 6 5 11 11 H 1.09005 * 109.47418 * 324.99918 * 10 9 6 12 12 C 1.53001 * 109.47017 * 205.00116 * 10 9 6 13 13 C 1.50699 * 109.47130 * 65.00078 * 12 10 9 14 14 H 1.07999 * 119.99950 * 0.02562 * 13 12 10 15 15 C 1.37881 * 120.00164 * 179.97438 * 13 12 10 16 16 N 1.31515 * 119.99705 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00094 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47076 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47378 * 120.00351 * 17 15 13 20 20 H 1.48502 * 109.46977 * 240.00379 * 17 15 13 21 21 C 1.50699 * 109.47111 * 85.00083 * 10 9 6 22 22 C 1.38237 * 119.99871 * 39.73292 * 21 10 9 23 23 C 1.38238 * 119.99933 * 179.81315 * 22 21 10 24 24 C 1.38232 * 119.99724 * 0.38680 * 23 22 21 25 25 C 1.38236 * 120.00465 * 359.86228 * 24 23 22 26 26 C 1.38237 * 119.99841 * 359.95132 * 25 24 23 27 27 S 1.70974 * 124.91905 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.46831 * 90.02520 * 1 2 3 29 29 H 1.08996 * 109.46776 * 210.02408 * 1 2 3 30 30 H 1.08997 * 109.47178 * 330.02768 * 1 2 3 31 31 H 1.07997 * 122.75197 * 179.97438 * 4 3 2 32 32 H 1.08999 * 109.47035 * 300.00465 * 8 6 5 33 33 H 1.09000 * 109.46732 * 60.00419 * 8 6 5 34 34 H 1.09002 * 109.46747 * 179.97438 * 8 6 5 35 35 H 1.00899 * 111.00681 * 328.95257 * 9 6 5 36 36 H 1.09000 * 109.47137 * 185.00070 * 12 10 9 37 37 H 1.09002 * 109.47464 * 304.99941 * 12 10 9 38 38 H 0.97004 * 119.99689 * 179.97438 * 16 15 13 39 39 H 1.08000 * 119.99871 * 359.97438 * 22 21 10 40 40 H 1.07995 * 120.00221 * 180.22536 * 23 22 21 41 41 H 1.08001 * 119.99751 * 179.83711 * 24 23 22 42 42 H 1.07993 * 120.00397 * 179.97438 * 25 24 23 43 43 H 1.07997 * 120.00131 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0581 0.0000 4 6 3.5512 0.8795 0.0005 5 6 3.9354 -0.4005 0.0004 6 6 5.3575 -0.8993 0.0004 7 1 6.0200 -0.1084 0.3522 8 6 5.7560 -1.3040 -1.4203 9 7 5.4683 -2.0628 0.8903 10 6 6.8422 -2.2166 1.3871 11 1 7.5453 -1.9159 0.6104 12 6 7.0889 -3.6799 1.7596 13 6 7.0155 -4.5332 0.5197 14 1 6.8135 -4.0773 -0.4383 15 6 7.2073 -5.8957 0.6080 16 7 7.4538 -6.4508 1.7746 17 14 7.1156 -6.9535 -0.9289 18 1 6.8273 -6.0938 -2.1049 19 1 8.4126 -7.6479 -1.1300 20 1 6.0343 -7.9594 -0.7736 21 6 7.0365 -1.3489 2.6038 22 6 6.0276 -1.2387 3.5424 23 6 6.2073 -0.4458 4.6604 24 6 7.3927 0.2432 4.8358 25 6 8.3997 0.1372 3.8946 26 6 8.2215 -0.6588 2.7785 27 16 2.4857 -1.4019 0.0006 28 1 -0.3633 -0.0005 -1.0276 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5134 31 1 4.2531 1.7002 0.0002 32 1 5.0936 -2.0949 -1.7721 33 1 5.6738 -0.4406 -2.0805 34 1 6.7848 -1.6643 -1.4203 35 1 4.8127 -1.9974 1.6545 36 1 8.0764 -3.7785 2.2106 37 1 6.3304 -4.0067 2.4710 38 1 7.5883 -7.4094 1.8368 39 1 5.1000 -1.7742 3.4036 40 1 5.4205 -0.3626 5.3956 41 1 7.5321 0.8648 5.7079 42 1 9.3256 0.6758 4.0314 43 1 9.0079 -0.7414 2.0430 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090666054.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:07 Heat of formation + Delta-G solvation = 61.486215 kcal Electronic energy + Delta-G solvation = -23841.370144 eV Core-core repulsion = 20591.755104 eV Total energy + Delta-G solvation = -3249.615039 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.74459 -39.21868 -36.73274 -33.75325 -32.32457 -31.35762 -30.66388 -29.24483 -28.09660 -27.50934 -24.63890 -23.84817 -22.43214 -21.90287 -21.52225 -19.79483 -19.09395 -17.80162 -17.00999 -16.08183 -15.45189 -15.19095 -14.96582 -14.75007 -14.43520 -14.38025 -13.89303 -13.61616 -13.31845 -13.11904 -12.86806 -12.73491 -12.53824 -12.44389 -12.09923 -12.00657 -11.75549 -11.38759 -11.16191 -11.02064 -10.99259 -10.83450 -10.64871 -10.50258 -10.17458 -9.66079 -9.49873 -9.12248 -9.01942 -8.66275 -8.65095 -8.29157 -8.24669 -7.85754 -5.90314 -3.88594 0.78196 1.44126 1.66938 1.67819 1.92386 2.87988 3.36539 3.44400 3.48511 4.07947 4.18263 4.54355 4.58678 4.89210 5.03037 5.15134 5.16334 5.25622 5.30320 5.33639 5.40190 5.46445 5.50678 5.59880 5.70297 5.71819 5.79641 5.82419 5.99526 6.08549 6.17383 6.24886 6.29915 6.36191 6.57442 6.72878 6.74700 6.78610 6.94004 7.29504 7.42907 7.60817 7.78499 7.89630 7.93682 8.10111 8.52995 9.16531 9.72882 11.21556 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.008586 B = 0.005498 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3260.300079 B = 5091.251900 C = 7412.813927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.015 3.985 3 N -0.477 5.477 4 C 0.028 3.972 5 C -0.212 4.212 6 C 0.159 3.841 7 H 0.058 0.942 8 C -0.134 4.134 9 N -0.653 5.653 10 C 0.129 3.871 11 H 0.078 0.922 12 C 0.043 3.957 13 C -0.488 4.488 14 H 0.061 0.939 15 C 0.052 3.948 16 N -0.901 5.901 17 Si 0.888 3.112 18 H -0.273 1.273 19 H -0.288 1.288 20 H -0.287 1.287 21 C -0.092 4.092 22 C -0.118 4.118 23 C -0.118 4.118 24 C -0.136 4.136 25 C -0.121 4.121 26 C -0.116 4.116 27 S 0.171 5.829 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.169 0.831 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.068 0.932 35 H 0.334 0.666 36 H 0.020 0.980 37 H 0.019 0.981 38 H 0.257 0.743 39 H 0.118 0.882 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.116 0.884 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.882 14.541 -0.165 16.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.262 4.262 3 N -0.192 5.192 4 C -0.124 4.124 5 C -0.334 4.334 6 C 0.047 3.953 7 H 0.075 0.925 8 C -0.192 4.192 9 N -0.284 5.284 10 C 0.020 3.980 11 H 0.096 0.904 12 C 0.005 3.995 13 C -0.527 4.527 14 H 0.080 0.920 15 C -0.148 4.148 16 N -0.542 5.542 17 Si 0.717 3.283 18 H -0.198 1.198 19 H -0.215 1.215 20 H -0.213 1.213 21 C -0.094 4.094 22 C -0.137 4.137 23 C -0.136 4.136 24 C -0.154 4.154 25 C -0.139 4.139 26 C -0.135 4.135 27 S 0.426 5.574 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.186 0.814 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.155 0.845 36 H 0.038 0.962 37 H 0.037 0.963 38 H 0.066 0.934 39 H 0.136 0.864 40 H 0.133 0.867 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.284 13.359 -0.624 15.732 hybrid contribution 0.728 0.768 0.012 1.058 sum -7.557 14.127 -0.613 16.033 Atomic orbital electron populations 1.20372 0.85634 1.03895 1.03544 1.27089 1.01841 0.92386 1.04904 1.66267 1.04750 1.32045 1.16166 1.21598 0.91080 0.95686 1.03991 1.26262 1.00415 0.96246 1.10489 1.19959 0.87124 0.92263 0.95992 0.92468 1.21823 1.02892 1.00779 0.93723 1.60919 1.06633 1.38289 1.22607 1.21041 0.88681 0.97693 0.90594 0.90378 1.19088 0.96779 0.86329 0.97274 1.21136 1.46090 0.91461 0.94004 0.92031 1.24986 0.96001 0.98189 0.95597 1.69980 1.50111 1.10838 1.23286 0.86595 0.77294 0.80571 0.83858 1.19794 1.21452 1.21301 1.21149 0.93841 0.95995 0.98425 1.20941 0.99292 0.98989 0.94438 1.21048 0.97486 0.97505 0.97585 1.21012 0.94248 1.00818 0.99307 1.21081 0.98684 0.99378 0.94730 1.21076 0.97271 0.97041 0.98113 1.84379 0.96195 1.10138 1.66722 0.89947 0.90229 0.89718 0.81375 0.91674 0.93245 0.91283 0.84517 0.96207 0.96284 0.93357 0.86443 0.86657 0.86776 0.86622 0.86220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.46 36.01 0.38 -0.27 16 2 C 0.01 0.18 7.39 -13.45 -0.10 0.09 16 3 N -0.48 -6.78 10.54 -11.86 -0.13 -6.91 16 4 C 0.03 0.39 11.24 -19.19 -0.22 0.17 16 5 C -0.21 -3.01 5.20 -35.92 -0.19 -3.20 16 6 C 0.16 2.39 2.88 -68.86 -0.20 2.19 16 7 H 0.06 0.85 7.63 -51.93 -0.40 0.45 16 8 C -0.13 -2.00 9.38 37.16 0.35 -1.65 16 9 N -0.65 -11.49 5.59 -102.16 -0.57 -12.07 16 10 C 0.13 2.47 1.98 -68.86 -0.14 2.34 16 11 H 0.08 1.50 6.98 -51.93 -0.36 1.13 16 12 C 0.04 1.05 4.63 -27.88 -0.13 0.92 16 13 C -0.49 -13.14 8.84 -34.44 -0.30 -13.44 16 14 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 15 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 16 N -0.90 -26.80 13.29 55.43 0.74 -26.07 16 17 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 C -0.09 -1.59 4.61 -104.62 -0.48 -2.07 16 22 C -0.12 -1.92 9.12 -39.58 -0.36 -2.28 16 23 C -0.12 -1.69 10.05 -39.58 -0.40 -2.09 16 24 C -0.14 -1.83 10.05 -39.58 -0.40 -2.22 16 25 C -0.12 -1.67 10.05 -39.58 -0.40 -2.07 16 26 C -0.12 -1.83 9.67 -39.58 -0.38 -2.21 16 27 S 0.17 2.29 22.81 -107.50 -2.45 -0.17 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.17 2.02 8.06 -52.49 -0.42 1.59 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 1.09 7.43 -51.93 -0.39 0.71 16 35 H 0.33 5.75 5.79 -39.29 -0.23 5.53 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.12 1.88 6.50 -52.49 -0.34 1.54 16 40 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 41 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 42 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 43 H 0.12 1.74 8.04 -52.49 -0.42 1.32 16 LS Contribution 371.74 15.07 5.60 5.60 Total: -1.00 -30.78 371.74 -11.22 -41.99 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -6.33 Total: 5.44 kcal Atomic # 6 Polarization: -21.38 SS G_CDS: -3.06 Total: -24.44 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: 0.04 Total: -45.04 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -2.45 Total: -0.17 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.78 -11.22 -41.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090666054.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.481 kcal (2) G-P(sol) polarization free energy of solvation -30.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds