Wall clock time and date at job start Tue Mar 31 2020 11:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29034 * 124.91509 * 2 1 4 4 C 1.31774 * 117.12480 * 179.97438 * 3 2 1 5 5 C 1.33641 * 114.50001 * 0.02562 * 4 3 2 6 6 C 1.50703 * 126.03640 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.47473 * 20.01744 * 6 5 4 8 8 C 1.53002 * 109.47264 * 260.01548 * 6 5 4 9 9 N 1.46904 * 109.46797 * 140.01633 * 6 5 4 10 10 C 1.46901 * 110.99731 * 204.99952 * 9 6 5 11 11 H 1.09005 * 109.47418 * 324.99918 * 10 9 6 12 12 C 1.53001 * 109.47017 * 205.00116 * 10 9 6 13 13 C 1.50699 * 109.47130 * 65.00078 * 12 10 9 14 14 H 1.07999 * 119.99950 * 0.02562 * 13 12 10 15 15 C 1.37881 * 120.00164 * 179.97438 * 13 12 10 16 16 N 1.31515 * 119.99705 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00094 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47076 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47378 * 120.00351 * 17 15 13 20 20 H 1.48502 * 109.46977 * 240.00379 * 17 15 13 21 21 C 1.50699 * 109.47111 * 85.00083 * 10 9 6 22 22 C 1.38237 * 119.99871 * 39.73292 * 21 10 9 23 23 C 1.38238 * 119.99933 * 179.81315 * 22 21 10 24 24 C 1.38232 * 119.99724 * 0.38680 * 23 22 21 25 25 C 1.38236 * 120.00465 * 359.86228 * 24 23 22 26 26 C 1.38237 * 119.99841 * 359.95132 * 25 24 23 27 27 S 1.70974 * 124.91905 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.46831 * 90.02520 * 1 2 3 29 29 H 1.08996 * 109.46776 * 210.02408 * 1 2 3 30 30 H 1.08997 * 109.47178 * 330.02768 * 1 2 3 31 31 H 1.07997 * 122.75197 * 179.97438 * 4 3 2 32 32 H 1.08999 * 109.47035 * 300.00465 * 8 6 5 33 33 H 1.09000 * 109.46732 * 60.00419 * 8 6 5 34 34 H 1.09002 * 109.46747 * 179.97438 * 8 6 5 35 35 H 1.00899 * 111.00681 * 328.95257 * 9 6 5 36 36 H 1.09000 * 109.47137 * 185.00070 * 12 10 9 37 37 H 1.09002 * 109.47464 * 304.99941 * 12 10 9 38 38 H 0.97004 * 119.99689 * 179.97438 * 16 15 13 39 39 H 1.08000 * 119.99871 * 359.97438 * 22 21 10 40 40 H 1.07995 * 120.00221 * 180.22536 * 23 22 21 41 41 H 1.08001 * 119.99751 * 179.83711 * 24 23 22 42 42 H 1.07993 * 120.00397 * 179.97438 * 25 24 23 43 43 H 1.07997 * 120.00131 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0581 0.0000 4 6 3.5512 0.8795 0.0005 5 6 3.9354 -0.4005 0.0004 6 6 5.3575 -0.8993 0.0004 7 1 6.0200 -0.1084 0.3522 8 6 5.7560 -1.3040 -1.4203 9 7 5.4683 -2.0628 0.8903 10 6 6.8422 -2.2166 1.3871 11 1 7.5453 -1.9159 0.6104 12 6 7.0889 -3.6799 1.7596 13 6 7.0155 -4.5332 0.5197 14 1 6.8135 -4.0773 -0.4383 15 6 7.2073 -5.8957 0.6080 16 7 7.4538 -6.4508 1.7746 17 14 7.1156 -6.9535 -0.9289 18 1 6.8273 -6.0938 -2.1049 19 1 8.4126 -7.6479 -1.1300 20 1 6.0343 -7.9594 -0.7736 21 6 7.0365 -1.3489 2.6038 22 6 6.0276 -1.2387 3.5424 23 6 6.2073 -0.4458 4.6604 24 6 7.3927 0.2432 4.8358 25 6 8.3997 0.1372 3.8946 26 6 8.2215 -0.6588 2.7785 27 16 2.4857 -1.4019 0.0006 28 1 -0.3633 -0.0005 -1.0276 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5134 31 1 4.2531 1.7002 0.0002 32 1 5.0936 -2.0949 -1.7721 33 1 5.6738 -0.4406 -2.0805 34 1 6.7848 -1.6643 -1.4203 35 1 4.8127 -1.9974 1.6545 36 1 8.0764 -3.7785 2.2106 37 1 6.3304 -4.0067 2.4710 38 1 7.5883 -7.4094 1.8368 39 1 5.1000 -1.7742 3.4036 40 1 5.4205 -0.3626 5.3956 41 1 7.5321 0.8648 5.7079 42 1 9.3256 0.6758 4.0314 43 1 9.0079 -0.7414 2.0430 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090666054.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:06 Heat of formation + Delta-G solvation = 44.595346 kcal Electronic energy + Delta-G solvation = -23842.102587 eV Core-core repulsion = 20591.755104 eV Total energy + Delta-G solvation = -3250.347482 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.86567 -40.39418 -38.01206 -35.38568 -34.03473 -32.36274 -31.81522 -30.62637 -29.74529 -28.56214 -26.34258 -24.90472 -23.76311 -23.37227 -22.72706 -21.13048 -20.23104 -18.90975 -18.55460 -17.75281 -16.74827 -16.48630 -16.34621 -16.03632 -15.81999 -15.58617 -15.01032 -14.87688 -14.45985 -14.27024 -14.23184 -14.08468 -13.72626 -13.64402 -13.37061 -13.24196 -13.05074 -12.86983 -12.67266 -12.54207 -12.35810 -12.23223 -12.17191 -12.03278 -11.73177 -11.46615 -11.09569 -10.55841 -10.47288 -10.18769 -9.80987 -9.69572 -9.53931 -9.24404 -8.07599 -6.12301 -0.24842 0.40988 0.48900 0.51462 0.88821 1.42062 1.43635 1.55748 1.83773 2.48510 2.90532 3.17778 3.27496 3.35170 3.72247 3.94467 3.99988 4.16672 4.17170 4.28989 4.30135 4.37767 4.50296 4.56312 4.66450 4.67865 4.69334 4.71424 4.86883 4.93599 5.01141 5.05109 5.14487 5.16795 5.27489 5.34657 5.50802 5.58275 5.60918 5.62574 5.70064 5.91127 6.14615 6.26355 6.40189 6.53622 6.76359 7.01437 7.53332 9.04768 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.008586 B = 0.005498 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3260.300079 B = 5091.251900 C = 7412.813927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.029 3.971 3 N -0.499 5.499 4 C 0.032 3.968 5 C -0.228 4.228 6 C 0.167 3.833 7 H 0.062 0.938 8 C -0.130 4.130 9 N -0.664 5.664 10 C 0.147 3.853 11 H 0.074 0.926 12 C 0.053 3.947 13 C -0.492 4.492 14 H 0.063 0.937 15 C -0.004 4.004 16 N -0.941 5.941 17 Si 0.954 3.046 18 H -0.263 1.263 19 H -0.284 1.284 20 H -0.285 1.285 21 C -0.114 4.114 22 C -0.134 4.134 23 C -0.122 4.122 24 C -0.130 4.130 25 C -0.119 4.119 26 C -0.130 4.130 27 S 0.152 5.848 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.184 0.816 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.055 0.945 35 H 0.334 0.666 36 H -0.012 1.012 37 H -0.012 1.012 38 H 0.257 0.743 39 H 0.109 0.891 40 H 0.139 0.861 41 H 0.148 0.852 42 H 0.146 0.854 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.654 16.438 -0.342 18.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.248 4.248 3 N -0.215 5.215 4 C -0.119 4.119 5 C -0.349 4.349 6 C 0.056 3.944 7 H 0.080 0.920 8 C -0.188 4.188 9 N -0.296 5.296 10 C 0.037 3.963 11 H 0.092 0.908 12 C 0.016 3.984 13 C -0.530 4.530 14 H 0.082 0.918 15 C -0.200 4.200 16 N -0.583 5.583 17 Si 0.780 3.220 18 H -0.187 1.187 19 H -0.210 1.210 20 H -0.211 1.211 21 C -0.116 4.116 22 C -0.152 4.152 23 C -0.140 4.140 24 C -0.148 4.148 25 C -0.137 4.137 26 C -0.149 4.149 27 S 0.406 5.594 28 H 0.118 0.882 29 H 0.115 0.885 30 H 0.112 0.888 31 H 0.201 0.799 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.155 0.845 36 H 0.007 0.993 37 H 0.006 0.994 38 H 0.066 0.934 39 H 0.127 0.873 40 H 0.156 0.844 41 H 0.166 0.834 42 H 0.164 0.836 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.056 15.271 -0.815 17.773 hybrid contribution 0.917 0.248 0.129 0.958 sum -8.139 15.520 -0.686 17.538 Atomic orbital electron populations 1.20596 0.82893 1.05169 1.05034 1.27754 1.03298 0.91311 1.02408 1.66355 1.04959 1.32550 1.17636 1.21849 0.91411 0.95859 1.02807 1.26066 0.99899 0.96564 1.12405 1.19832 0.88138 0.91316 0.95157 0.92010 1.21785 1.01564 1.01214 0.94222 1.60787 1.05703 1.40236 1.22907 1.20522 0.89590 0.94550 0.91649 0.90790 1.18853 0.93896 0.90114 0.95538 1.21474 1.44841 0.91925 0.94764 0.91836 1.25821 0.95923 0.99746 0.98497 1.70117 1.51593 1.11088 1.25504 0.85562 0.77241 0.78762 0.80443 1.18688 1.21045 1.21121 1.20954 0.95235 0.97213 0.98158 1.21006 0.98940 0.99911 0.95362 1.21362 0.98733 0.96764 0.97135 1.21447 0.93316 1.00090 0.99958 1.21440 1.00004 0.98541 0.93717 1.21257 0.96760 0.97576 0.99305 1.84440 0.96592 1.11100 1.67218 0.88200 0.88525 0.88816 0.79943 0.93169 0.90935 0.92583 0.84495 0.99345 0.99363 0.93402 0.87273 0.84356 0.83394 0.83648 0.85837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.15 10.46 71.24 0.75 -0.40 16 2 C 0.03 0.69 7.39 88.52 0.65 1.34 16 3 N -0.50 -13.44 10.54 -191.45 -2.02 -15.46 16 4 C 0.03 0.85 11.24 83.66 0.94 1.79 16 5 C -0.23 -6.35 5.20 24.64 0.13 -6.22 16 6 C 0.17 5.05 2.88 44.17 0.13 5.18 16 7 H 0.06 1.81 7.63 -2.39 -0.02 1.80 16 8 C -0.13 -3.87 9.38 71.98 0.68 -3.20 16 9 N -0.66 -24.15 5.59 -477.13 -2.67 -26.82 16 10 C 0.15 5.85 1.98 44.17 0.09 5.93 16 11 H 0.07 2.95 6.98 -2.38 -0.02 2.93 16 12 C 0.05 2.77 4.63 29.85 0.14 2.91 16 13 C -0.49 -27.30 8.84 25.60 0.23 -27.07 16 14 H 0.06 3.44 7.74 -2.91 -0.02 3.41 16 15 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 16 N -0.94 -57.75 13.29 21.45 0.28 -57.46 16 17 Si 0.95 45.11 29.54 68.60 2.03 47.14 16 18 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 19 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 20 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 21 C -0.11 -3.99 4.61 -19.86 -0.09 -4.09 16 22 C -0.13 -4.38 9.12 22.27 0.20 -4.18 16 23 C -0.12 -3.30 10.05 22.27 0.22 -3.07 16 24 C -0.13 -3.13 10.05 22.27 0.22 -2.90 16 25 C -0.12 -3.03 10.05 22.27 0.22 -2.81 16 26 C -0.13 -4.04 9.67 22.27 0.22 -3.83 16 27 S 0.15 3.99 22.81 -56.49 -1.29 2.70 16 28 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.18 4.10 8.06 -2.91 -0.02 4.07 16 32 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.06 1.79 7.43 -2.39 -0.02 1.77 16 35 H 0.33 11.99 5.79 -89.69 -0.52 11.48 16 36 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 37 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 38 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 39 H 0.11 3.65 6.50 -2.91 -0.02 3.63 16 40 H 0.14 3.02 8.06 -2.91 -0.02 2.99 16 41 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 42 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 43 H 0.12 3.61 8.04 -2.91 -0.02 3.58 16 Total: -1.00 -67.87 371.74 2.00 -65.87 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: 0.48 Total: 24.42 kcal Atomic # 6 Polarization: -45.57 SS G_CDS: 5.18 Total: -40.39 kcal Atomic # 7 Polarization: -95.34 SS G_CDS: -4.40 Total: -99.74 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Atomic # 16 Polarization: 3.99 SS G_CDS: -1.29 Total: 2.70 kcal Total: -67.87 2.00 -65.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090666054.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.463 kcal (2) G-P(sol) polarization free energy of solvation -67.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds