Wall clock time and date at job start Tue Mar 31 2020 10:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38360 * 119.85250 * 2 1 4 4 C 1.37965 * 120.13828 * 180.02562 * 3 2 1 5 5 C 1.39546 * 119.85659 * 359.97073 * 4 3 2 6 6 C 1.47874 * 120.13957 * 180.02562 * 5 4 3 7 7 N 1.30225 * 125.47082 * 0.02651 * 6 5 4 8 8 C 1.31304 * 117.03915 * 179.97438 * 7 6 5 9 9 C 1.33723 * 115.85226 * 359.97438 * 8 7 6 10 10 C 1.50695 * 125.89752 * 180.02562 * 9 8 7 11 11 N 1.46896 * 109.47619 * 89.99678 * 10 9 8 12 12 C 1.46902 * 110.99524 * 66.04936 * 11 10 9 13 13 C 1.46894 * 111.00342 * 189.99958 * 11 10 9 14 14 H 1.08998 * 109.46828 * 55.00887 * 13 11 10 15 15 C 1.52997 * 109.47515 * 295.00322 * 13 11 10 16 16 C 1.50706 * 109.47162 * 174.99916 * 13 11 10 17 17 H 1.07998 * 119.99629 * 0.02562 * 16 13 11 18 18 C 1.37875 * 119.99955 * 179.97438 * 16 13 11 19 19 N 1.31510 * 120.00308 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 119.99908 * 180.02562 * 18 16 13 21 21 H 1.48503 * 109.46848 * 60.00326 * 20 18 16 22 22 H 1.48500 * 109.47035 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47237 * 300.00475 * 20 18 16 24 24 S 1.76176 * 125.47127 * 180.31113 * 6 5 4 25 25 C 1.39544 * 119.71812 * 0.28003 * 5 4 3 26 26 C 1.37963 * 119.85343 * 359.44676 * 25 5 4 27 27 H 1.08994 * 109.46916 * 90.00530 * 1 2 3 28 28 H 1.08996 * 109.46449 * 210.00388 * 1 2 3 29 29 H 1.08999 * 109.46791 * 329.99924 * 1 2 3 30 30 H 1.07995 * 119.93041 * 359.97438 * 3 2 1 31 31 H 1.08007 * 120.06686 * 179.97438 * 4 3 2 32 32 H 1.08007 * 122.07603 * 180.02562 * 8 7 6 33 33 H 1.09006 * 109.47166 * 329.99696 * 10 9 8 34 34 H 1.09003 * 109.47429 * 210.00267 * 10 9 8 35 35 H 1.09003 * 109.46808 * 183.95968 * 12 11 10 36 36 H 1.09004 * 109.47176 * 303.95456 * 12 11 10 37 37 H 1.08994 * 109.47263 * 63.95670 * 12 11 10 38 38 H 1.09002 * 109.47153 * 59.99762 * 15 13 11 39 39 H 1.09001 * 109.46832 * 299.99953 * 15 13 11 40 40 H 1.09004 * 109.47261 * 179.97438 * 15 13 11 41 41 H 0.96998 * 120.00365 * 179.97438 * 19 18 16 42 42 H 1.08001 * 120.07335 * 179.72092 * 25 5 4 43 43 H 1.08001 * 119.93126 * 180.25575 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1958 1.2000 0.0000 4 6 3.5754 1.2069 -0.0005 5 6 4.2761 0.0001 -0.0005 6 6 5.7549 0.0002 -0.0005 7 7 6.5105 1.0608 0.0000 8 6 7.8094 0.8683 0.0004 9 6 8.2098 -0.4075 0.0009 10 6 9.6391 -0.8851 0.0020 11 7 10.1026 -1.0400 1.3873 12 6 9.3736 -2.1179 2.0689 13 6 11.5522 -1.2732 1.4345 14 1 12.0667 -0.4701 0.9068 15 6 11.8755 -2.6114 0.7670 16 6 12.0095 -1.3044 2.8701 17 1 11.2947 -1.1654 3.6677 18 6 13.3402 -1.5116 3.1654 19 7 14.2106 -1.6814 2.1942 20 14 13.9070 -1.5510 4.9449 21 1 13.2055 -2.6449 5.6636 22 1 15.3724 -1.7866 4.9926 23 1 13.5935 -0.2522 5.5931 24 16 6.7773 -1.4345 -0.0082 25 6 3.5755 -1.2067 -0.0058 26 6 2.1959 -1.1998 0.0005 27 1 -0.3633 -0.0001 -1.0276 28 1 -0.3632 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.6523 2.1332 -0.0004 31 1 4.1119 2.1443 -0.0010 32 1 8.5109 1.6896 0.0012 33 1 10.2661 -0.1562 -0.5115 34 1 9.7021 -1.8444 -0.5116 35 1 9.6862 -2.1648 3.1121 36 1 8.3027 -1.9203 2.0191 37 1 9.5907 -3.0682 1.5813 38 1 11.5447 -2.5887 -0.2714 39 1 11.3609 -3.4143 1.2948 40 1 12.9512 -2.7842 0.8016 41 1 15.1469 -1.8267 2.4019 42 1 4.1120 -2.1440 -0.0103 43 1 1.6524 -2.1331 0.0006 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093091182.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:30 Heat of formation + Delta-G solvation = 71.119543 kcal Electronic energy + Delta-G solvation = -22787.033402 eV Core-core repulsion = 19537.836095 eV Total energy + Delta-G solvation = -3249.197307 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.85836 -38.98831 -37.27123 -33.75478 -32.89272 -31.24719 -30.85228 -28.70998 -27.87822 -26.05725 -25.20710 -24.56404 -23.26739 -22.60161 -21.56850 -19.54596 -19.10809 -17.76095 -16.43464 -16.16186 -15.50003 -15.42882 -15.21470 -14.70243 -14.51018 -14.20385 -13.89516 -13.71341 -13.63656 -13.55683 -13.34322 -12.78335 -12.55540 -12.27785 -12.19135 -11.83895 -11.52553 -11.36163 -11.27095 -11.18016 -10.97500 -10.81664 -10.73755 -10.49550 -10.08726 -9.95082 -9.58367 -9.54131 -9.20231 -9.03844 -8.94834 -8.42458 -8.03233 -7.26594 -6.04729 -4.08745 0.26076 1.17465 1.37420 1.47870 1.84259 2.99688 3.31058 3.35271 3.38579 3.64541 4.00509 4.38948 4.55224 4.60816 4.77144 4.98240 5.02232 5.10505 5.20523 5.23607 5.27070 5.27719 5.44698 5.48667 5.50818 5.75449 5.82262 5.98014 6.05368 6.09683 6.13773 6.25409 6.31263 6.33349 6.42025 6.59913 6.69688 6.74947 6.83459 7.03096 7.37827 7.64743 7.76803 7.82897 8.02220 8.29726 8.50431 8.96248 9.56306 11.02284 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.029478 B = 0.002467 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.628814 B =11349.031947 C =11487.463510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.079 4.079 3 C -0.122 4.122 4 C -0.072 4.072 5 C -0.020 4.020 6 C 0.089 3.911 7 N -0.457 5.457 8 C 0.038 3.962 9 C -0.168 4.168 10 C 0.123 3.877 11 N -0.528 5.528 12 C 0.029 3.971 13 C 0.212 3.788 14 H 0.042 0.958 15 C -0.174 4.174 16 C -0.501 4.501 17 H 0.062 0.938 18 C 0.059 3.941 19 N -0.894 5.894 20 Si 0.898 3.102 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.276 1.276 24 S 0.080 5.920 25 C -0.097 4.097 26 C -0.119 4.119 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.127 0.873 31 H 0.135 0.865 32 H 0.177 0.823 33 H 0.092 0.908 34 H 0.041 0.959 35 H 0.076 0.924 36 H 0.042 0.958 37 H 0.020 0.980 38 H 0.007 0.993 39 H 0.031 0.969 40 H 0.090 0.910 41 H 0.261 0.739 42 H 0.125 0.875 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.558 1.335 -7.025 24.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.080 4.080 3 C -0.140 4.140 4 C -0.093 4.093 5 C -0.024 4.024 6 C -0.185 4.185 7 N -0.171 5.171 8 C -0.114 4.114 9 C -0.289 4.289 10 C -0.008 4.008 11 N -0.251 5.251 12 C -0.120 4.120 13 C 0.106 3.894 14 H 0.060 0.940 15 C -0.233 4.233 16 C -0.539 4.539 17 H 0.080 0.920 18 C -0.142 4.142 19 N -0.533 5.533 20 Si 0.726 3.274 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.202 1.202 24 S 0.336 5.664 25 C -0.117 4.117 26 C -0.137 4.137 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.145 0.855 31 H 0.153 0.847 32 H 0.194 0.806 33 H 0.110 0.890 34 H 0.059 0.941 35 H 0.095 0.905 36 H 0.061 0.939 37 H 0.038 0.962 38 H 0.026 0.974 39 H 0.050 0.950 40 H 0.109 0.891 41 H 0.071 0.929 42 H 0.143 0.857 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -23.775 1.165 -6.810 24.758 hybrid contribution 1.358 -0.213 0.553 1.482 sum -22.417 0.952 -6.257 23.293 Atomic orbital electron populations 1.20822 0.91034 1.02940 1.02431 1.20069 0.96236 0.93167 0.98537 1.21011 0.93792 0.97736 1.01497 1.21277 0.93722 0.97695 0.96629 1.17841 0.87116 0.94261 1.03191 1.25664 0.96723 0.90244 1.05880 1.66486 1.04806 1.30851 1.14914 1.21509 0.90443 0.96288 1.03121 1.26102 0.99738 0.95588 1.07469 1.20519 0.87030 0.99822 0.93403 1.62446 1.07894 1.44183 1.10622 1.22349 0.96450 0.92357 1.00844 1.19349 0.80173 0.92853 0.97013 0.94032 1.22430 1.05059 1.00367 0.95478 1.21045 0.93001 1.48517 0.91364 0.91953 1.24920 0.96641 0.95297 0.97390 1.69863 1.02688 1.49533 1.31243 0.86562 0.77350 0.78610 0.84893 1.20365 1.21370 1.20194 1.84809 0.99045 1.12729 1.69823 1.21167 0.94484 0.96755 0.99320 1.20885 0.93454 0.97815 1.01527 0.91010 0.91416 0.91397 0.85537 0.84666 0.80624 0.89025 0.94055 0.90486 0.93895 0.96164 0.97389 0.94977 0.89129 0.92889 0.85720 0.85506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 10.01 36.01 0.36 -0.28 16 2 C -0.08 -0.66 5.89 -104.53 -0.62 -1.28 16 3 C -0.12 -1.10 9.68 -39.64 -0.38 -1.49 16 4 C -0.07 -0.81 9.68 -39.19 -0.38 -1.19 16 5 C -0.02 -0.25 5.87 -104.98 -0.62 -0.87 16 6 C 0.09 1.30 7.35 -14.29 -0.11 1.19 16 7 N -0.46 -7.24 10.14 -11.35 -0.12 -7.35 16 8 C 0.04 0.60 11.14 -19.36 -0.22 0.38 16 9 C -0.17 -2.72 5.30 -35.89 -0.19 -2.91 16 10 C 0.12 2.19 4.93 -4.98 -0.02 2.17 16 11 N -0.53 -11.16 4.73 -237.73 -1.13 -12.29 16 12 C 0.03 0.57 8.70 60.07 0.52 1.09 16 13 C 0.21 5.19 2.34 -68.87 -0.16 5.03 16 14 H 0.04 1.11 8.03 -51.93 -0.42 0.69 16 15 C -0.17 -4.10 8.28 37.16 0.31 -3.79 16 16 C -0.50 -13.47 7.94 -34.44 -0.27 -13.75 16 17 H 0.06 1.69 6.75 -52.49 -0.35 1.34 16 18 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 19 N -0.89 -25.03 11.32 55.43 0.63 -24.40 16 20 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 S 0.08 1.14 20.94 -107.50 -2.25 -1.11 16 25 C -0.10 -1.02 9.61 -39.20 -0.38 -1.40 16 26 C -0.12 -1.04 9.68 -39.64 -0.38 -1.43 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 29 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 30 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 31 H 0.14 1.52 7.82 -52.48 -0.41 1.11 16 32 H 0.18 2.56 8.06 -52.48 -0.42 2.14 16 33 H 0.09 1.58 8.00 -51.93 -0.42 1.16 16 34 H 0.04 0.73 6.94 -51.93 -0.36 0.37 16 35 H 0.08 1.64 6.53 -51.93 -0.34 1.30 16 36 H 0.04 0.77 5.88 -51.93 -0.31 0.47 16 37 H 0.02 0.39 6.28 -51.93 -0.33 0.07 16 38 H 0.01 0.15 6.75 -51.93 -0.35 -0.20 16 39 H 0.03 0.74 6.39 -51.93 -0.33 0.40 16 40 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 41 H 0.26 7.02 8.31 -40.82 -0.34 6.69 16 42 H 0.12 1.20 7.30 -52.49 -0.38 0.82 16 43 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 359.22 15.07 5.41 5.41 Total: -1.00 -29.10 359.22 -11.08 -40.17 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -5.97 Total: 0.39 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: -2.63 Total: -17.02 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: -0.61 Total: -44.04 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 1.14 SS G_CDS: -2.25 Total: -1.11 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.10 -11.08 -40.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093091182.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.292 kcal (2) G-P(sol) polarization free energy of solvation -29.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds