Wall clock time and date at job start Tue Mar 31 2020 10:47:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 C 1.38360 * 119.85250 * 2 1
4 4 C 1.37965 * 120.13828 * 180.02562 * 3 2 1
5 5 C 1.39546 * 119.85659 * 359.97073 * 4 3 2
6 6 C 1.47874 * 120.13957 * 180.02562 * 5 4 3
7 7 N 1.30225 * 125.47082 * 0.02651 * 6 5 4
8 8 C 1.31304 * 117.03915 * 179.97438 * 7 6 5
9 9 C 1.33723 * 115.85226 * 359.97438 * 8 7 6
10 10 C 1.50695 * 125.89752 * 180.02562 * 9 8 7
11 11 N 1.46896 * 109.47619 * 89.99678 * 10 9 8
12 12 C 1.46902 * 110.99524 * 66.04936 * 11 10 9
13 13 C 1.46894 * 111.00342 * 189.99958 * 11 10 9
14 14 H 1.08998 * 109.46828 * 55.00887 * 13 11 10
15 15 C 1.52997 * 109.47515 * 295.00322 * 13 11 10
16 16 C 1.50706 * 109.47162 * 174.99916 * 13 11 10
17 17 H 1.07998 * 119.99629 * 0.02562 * 16 13 11
18 18 C 1.37875 * 119.99955 * 179.97438 * 16 13 11
19 19 N 1.31510 * 120.00308 * 0.02562 * 18 16 13
20 20 Si 1.86800 * 119.99908 * 180.02562 * 18 16 13
21 21 H 1.48503 * 109.46848 * 60.00326 * 20 18 16
22 22 H 1.48500 * 109.47035 * 180.02562 * 20 18 16
23 23 H 1.48503 * 109.47237 * 300.00475 * 20 18 16
24 24 S 1.76176 * 125.47127 * 180.31113 * 6 5 4
25 25 C 1.39544 * 119.71812 * 0.28003 * 5 4 3
26 26 C 1.37963 * 119.85343 * 359.44676 * 25 5 4
27 27 H 1.08994 * 109.46916 * 90.00530 * 1 2 3
28 28 H 1.08996 * 109.46449 * 210.00388 * 1 2 3
29 29 H 1.08999 * 109.46791 * 329.99924 * 1 2 3
30 30 H 1.07995 * 119.93041 * 359.97438 * 3 2 1
31 31 H 1.08007 * 120.06686 * 179.97438 * 4 3 2
32 32 H 1.08007 * 122.07603 * 180.02562 * 8 7 6
33 33 H 1.09006 * 109.47166 * 329.99696 * 10 9 8
34 34 H 1.09003 * 109.47429 * 210.00267 * 10 9 8
35 35 H 1.09003 * 109.46808 * 183.95968 * 12 11 10
36 36 H 1.09004 * 109.47176 * 303.95456 * 12 11 10
37 37 H 1.08994 * 109.47263 * 63.95670 * 12 11 10
38 38 H 1.09002 * 109.47153 * 59.99762 * 15 13 11
39 39 H 1.09001 * 109.46832 * 299.99953 * 15 13 11
40 40 H 1.09004 * 109.47261 * 179.97438 * 15 13 11
41 41 H 0.96998 * 120.00365 * 179.97438 * 19 18 16
42 42 H 1.08001 * 120.07335 * 179.72092 * 25 5 4
43 43 H 1.08001 * 119.93126 * 180.25575 * 26 25 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.1958 1.2000 0.0000
4 6 3.5754 1.2069 -0.0005
5 6 4.2761 0.0001 -0.0005
6 6 5.7549 0.0002 -0.0005
7 7 6.5105 1.0608 0.0000
8 6 7.8094 0.8683 0.0004
9 6 8.2098 -0.4075 0.0009
10 6 9.6391 -0.8851 0.0020
11 7 10.1026 -1.0400 1.3873
12 6 9.3736 -2.1179 2.0689
13 6 11.5522 -1.2732 1.4345
14 1 12.0667 -0.4701 0.9068
15 6 11.8755 -2.6114 0.7670
16 6 12.0095 -1.3044 2.8701
17 1 11.2947 -1.1654 3.6677
18 6 13.3402 -1.5116 3.1654
19 7 14.2106 -1.6814 2.1942
20 14 13.9070 -1.5510 4.9449
21 1 13.2055 -2.6449 5.6636
22 1 15.3724 -1.7866 4.9926
23 1 13.5935 -0.2522 5.5931
24 16 6.7773 -1.4345 -0.0082
25 6 3.5755 -1.2067 -0.0058
26 6 2.1959 -1.1998 0.0005
27 1 -0.3633 -0.0001 -1.0276
28 1 -0.3632 -0.8900 0.5139
29 1 -0.3633 0.8900 0.5138
30 1 1.6523 2.1332 -0.0004
31 1 4.1119 2.1443 -0.0010
32 1 8.5109 1.6896 0.0012
33 1 10.2661 -0.1562 -0.5115
34 1 9.7021 -1.8444 -0.5116
35 1 9.6862 -2.1648 3.1121
36 1 8.3027 -1.9203 2.0191
37 1 9.5907 -3.0682 1.5813
38 1 11.5447 -2.5887 -0.2714
39 1 11.3609 -3.4143 1.2948
40 1 12.9512 -2.7842 0.8016
41 1 15.1469 -1.8267 2.4019
42 1 4.1120 -2.1440 -0.0103
43 1 1.6524 -2.1331 0.0006
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000093091182.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:47:30
Heat of formation + Delta-G solvation = 71.119543 kcal
Electronic energy + Delta-G solvation = -22787.033402 eV
Core-core repulsion = 19537.836095 eV
Total energy + Delta-G solvation = -3249.197307 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 316.130 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-39.85836 -38.98831 -37.27123 -33.75478 -32.89272 -31.24719 -30.85228 -28.70998
-27.87822 -26.05725 -25.20710 -24.56404 -23.26739 -22.60161 -21.56850 -19.54596
-19.10809 -17.76095 -16.43464 -16.16186 -15.50003 -15.42882 -15.21470 -14.70243
-14.51018 -14.20385 -13.89516 -13.71341 -13.63656 -13.55683 -13.34322 -12.78335
-12.55540 -12.27785 -12.19135 -11.83895 -11.52553 -11.36163 -11.27095 -11.18016
-10.97500 -10.81664 -10.73755 -10.49550 -10.08726 -9.95082 -9.58367 -9.54131
-9.20231 -9.03844 -8.94834 -8.42458 -8.03233 -7.26594 -6.04729 -4.08745
0.26076 1.17465 1.37420 1.47870 1.84259 2.99688 3.31058 3.35271
3.38579 3.64541 4.00509 4.38948 4.55224 4.60816 4.77144 4.98240
5.02232 5.10505 5.20523 5.23607 5.27070 5.27719 5.44698 5.48667
5.50818 5.75449 5.82262 5.98014 6.05368 6.09683 6.13773 6.25409
6.31263 6.33349 6.42025 6.59913 6.69688 6.74947 6.83459 7.03096
7.37827 7.64743 7.76803 7.82897 8.02220 8.29726 8.50431 8.96248
9.56306 11.02284
Molecular weight = 316.13amu
Principal moments of inertia in cm(-1)
A = 0.029478 B = 0.002467 C = 0.002437
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 949.628814 B =11349.031947 C =11487.463510
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.116 4.116
2 C -0.079 4.079
3 C -0.122 4.122
4 C -0.072 4.072
5 C -0.020 4.020
6 C 0.089 3.911
7 N -0.457 5.457
8 C 0.038 3.962
9 C -0.168 4.168
10 C 0.123 3.877
11 N -0.528 5.528
12 C 0.029 3.971
13 C 0.212 3.788
14 H 0.042 0.958
15 C -0.174 4.174
16 C -0.501 4.501
17 H 0.062 0.938
18 C 0.059 3.941
19 N -0.894 5.894
20 Si 0.898 3.102
21 H -0.278 1.278
22 H -0.288 1.288
23 H -0.276 1.276
24 S 0.080 5.920
25 C -0.097 4.097
26 C -0.119 4.119
27 H 0.071 0.929
28 H 0.067 0.933
29 H 0.067 0.933
30 H 0.127 0.873
31 H 0.135 0.865
32 H 0.177 0.823
33 H 0.092 0.908
34 H 0.041 0.959
35 H 0.076 0.924
36 H 0.042 0.958
37 H 0.020 0.980
38 H 0.007 0.993
39 H 0.031 0.969
40 H 0.090 0.910
41 H 0.261 0.739
42 H 0.125 0.875
43 H 0.127 0.873
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.558 1.335 -7.025 24.620
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.172 4.172
2 C -0.080 4.080
3 C -0.140 4.140
4 C -0.093 4.093
5 C -0.024 4.024
6 C -0.185 4.185
7 N -0.171 5.171
8 C -0.114 4.114
9 C -0.289 4.289
10 C -0.008 4.008
11 N -0.251 5.251
12 C -0.120 4.120
13 C 0.106 3.894
14 H 0.060 0.940
15 C -0.233 4.233
16 C -0.539 4.539
17 H 0.080 0.920
18 C -0.142 4.142
19 N -0.533 5.533
20 Si 0.726 3.274
21 H -0.204 1.204
22 H -0.214 1.214
23 H -0.202 1.202
24 S 0.336 5.664
25 C -0.117 4.117
26 C -0.137 4.137
27 H 0.090 0.910
28 H 0.086 0.914
29 H 0.086 0.914
30 H 0.145 0.855
31 H 0.153 0.847
32 H 0.194 0.806
33 H 0.110 0.890
34 H 0.059 0.941
35 H 0.095 0.905
36 H 0.061 0.939
37 H 0.038 0.962
38 H 0.026 0.974
39 H 0.050 0.950
40 H 0.109 0.891
41 H 0.071 0.929
42 H 0.143 0.857
43 H 0.145 0.855
Dipole moment (debyes) X Y Z Total
from point charges -23.775 1.165 -6.810 24.758
hybrid contribution 1.358 -0.213 0.553 1.482
sum -22.417 0.952 -6.257 23.293
Atomic orbital electron populations
1.20822 0.91034 1.02940 1.02431 1.20069 0.96236 0.93167 0.98537
1.21011 0.93792 0.97736 1.01497 1.21277 0.93722 0.97695 0.96629
1.17841 0.87116 0.94261 1.03191 1.25664 0.96723 0.90244 1.05880
1.66486 1.04806 1.30851 1.14914 1.21509 0.90443 0.96288 1.03121
1.26102 0.99738 0.95588 1.07469 1.20519 0.87030 0.99822 0.93403
1.62446 1.07894 1.44183 1.10622 1.22349 0.96450 0.92357 1.00844
1.19349 0.80173 0.92853 0.97013 0.94032 1.22430 1.05059 1.00367
0.95478 1.21045 0.93001 1.48517 0.91364 0.91953 1.24920 0.96641
0.95297 0.97390 1.69863 1.02688 1.49533 1.31243 0.86562 0.77350
0.78610 0.84893 1.20365 1.21370 1.20194 1.84809 0.99045 1.12729
1.69823 1.21167 0.94484 0.96755 0.99320 1.20885 0.93454 0.97815
1.01527 0.91010 0.91416 0.91397 0.85537 0.84666 0.80624 0.89025
0.94055 0.90486 0.93895 0.96164 0.97389 0.94977 0.89129 0.92889
0.85720 0.85506
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -0.64 10.01 36.01 0.36 -0.28 16
2 C -0.08 -0.66 5.89 -104.53 -0.62 -1.28 16
3 C -0.12 -1.10 9.68 -39.64 -0.38 -1.49 16
4 C -0.07 -0.81 9.68 -39.19 -0.38 -1.19 16
5 C -0.02 -0.25 5.87 -104.98 -0.62 -0.87 16
6 C 0.09 1.30 7.35 -14.29 -0.11 1.19 16
7 N -0.46 -7.24 10.14 -11.35 -0.12 -7.35 16
8 C 0.04 0.60 11.14 -19.36 -0.22 0.38 16
9 C -0.17 -2.72 5.30 -35.89 -0.19 -2.91 16
10 C 0.12 2.19 4.93 -4.98 -0.02 2.17 16
11 N -0.53 -11.16 4.73 -237.73 -1.13 -12.29 16
12 C 0.03 0.57 8.70 60.07 0.52 1.09 16
13 C 0.21 5.19 2.34 -68.87 -0.16 5.03 16
14 H 0.04 1.11 8.03 -51.93 -0.42 0.69 16
15 C -0.17 -4.10 8.28 37.16 0.31 -3.79 16
16 C -0.50 -13.47 7.94 -34.44 -0.27 -13.75 16
17 H 0.06 1.69 6.75 -52.49 -0.35 1.34 16
18 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16
19 N -0.89 -25.03 11.32 55.43 0.63 -24.40 16
20 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16
21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16
22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16
23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16
24 S 0.08 1.14 20.94 -107.50 -2.25 -1.11 16
25 C -0.10 -1.02 9.61 -39.20 -0.38 -1.40 16
26 C -0.12 -1.04 9.68 -39.64 -0.38 -1.43 16
27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16
28 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16
29 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16
30 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16
31 H 0.14 1.52 7.82 -52.48 -0.41 1.11 16
32 H 0.18 2.56 8.06 -52.48 -0.42 2.14 16
33 H 0.09 1.58 8.00 -51.93 -0.42 1.16 16
34 H 0.04 0.73 6.94 -51.93 -0.36 0.37 16
35 H 0.08 1.64 6.53 -51.93 -0.34 1.30 16
36 H 0.04 0.77 5.88 -51.93 -0.31 0.47 16
37 H 0.02 0.39 6.28 -51.93 -0.33 0.07 16
38 H 0.01 0.15 6.75 -51.93 -0.35 -0.20 16
39 H 0.03 0.74 6.39 -51.93 -0.33 0.40 16
40 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16
41 H 0.26 7.02 8.31 -40.82 -0.34 6.69 16
42 H 0.12 1.20 7.30 -52.49 -0.38 0.82 16
43 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16
LS Contribution 359.22 15.07 5.41 5.41
Total: -1.00 -29.10 359.22 -11.08 -40.17
By element:
Atomic # 1 Polarization: 6.36 SS G_CDS: -5.97 Total: 0.39 kcal
Atomic # 6 Polarization: -14.39 SS G_CDS: -2.63 Total: -17.02 kcal
Atomic # 7 Polarization: -43.43 SS G_CDS: -0.61 Total: -44.04 kcal
Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal
Atomic # 16 Polarization: 1.14 SS G_CDS: -2.25 Total: -1.11 kcal
Total LS contribution 5.41 Total: 5.41 kcal
Total: -29.10 -11.08 -40.17 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000093091182.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 111.292 kcal
(2) G-P(sol) polarization free energy of solvation -29.097 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.195 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.076 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.172 kcal
(6) G-S(sol) free energy of system = (1) + (5) 71.120 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds