Wall clock time and date at job start Tue Mar 31 2020 10:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38360 * 119.85250 * 2 1 4 4 C 1.37965 * 120.13828 * 180.02562 * 3 2 1 5 5 C 1.39546 * 119.85659 * 359.97073 * 4 3 2 6 6 C 1.47874 * 120.13957 * 180.02562 * 5 4 3 7 7 N 1.30225 * 125.47082 * 0.02651 * 6 5 4 8 8 C 1.31304 * 117.03915 * 179.97438 * 7 6 5 9 9 C 1.33723 * 115.85226 * 359.97438 * 8 7 6 10 10 C 1.50695 * 125.89752 * 180.02562 * 9 8 7 11 11 N 1.46896 * 109.47619 * 89.99678 * 10 9 8 12 12 C 1.46902 * 110.99524 * 66.04936 * 11 10 9 13 13 C 1.46894 * 111.00342 * 189.99958 * 11 10 9 14 14 H 1.08998 * 109.46828 * 55.00887 * 13 11 10 15 15 C 1.52997 * 109.47515 * 295.00322 * 13 11 10 16 16 C 1.50706 * 109.47162 * 174.99916 * 13 11 10 17 17 H 1.07998 * 119.99629 * 0.02562 * 16 13 11 18 18 C 1.37875 * 119.99955 * 179.97438 * 16 13 11 19 19 N 1.31510 * 120.00308 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 119.99908 * 180.02562 * 18 16 13 21 21 H 1.48503 * 109.46848 * 60.00326 * 20 18 16 22 22 H 1.48500 * 109.47035 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47237 * 300.00475 * 20 18 16 24 24 S 1.76176 * 125.47127 * 180.31113 * 6 5 4 25 25 C 1.39544 * 119.71812 * 0.28003 * 5 4 3 26 26 C 1.37963 * 119.85343 * 359.44676 * 25 5 4 27 27 H 1.08994 * 109.46916 * 90.00530 * 1 2 3 28 28 H 1.08996 * 109.46449 * 210.00388 * 1 2 3 29 29 H 1.08999 * 109.46791 * 329.99924 * 1 2 3 30 30 H 1.07995 * 119.93041 * 359.97438 * 3 2 1 31 31 H 1.08007 * 120.06686 * 179.97438 * 4 3 2 32 32 H 1.08007 * 122.07603 * 180.02562 * 8 7 6 33 33 H 1.09006 * 109.47166 * 329.99696 * 10 9 8 34 34 H 1.09003 * 109.47429 * 210.00267 * 10 9 8 35 35 H 1.09003 * 109.46808 * 183.95968 * 12 11 10 36 36 H 1.09004 * 109.47176 * 303.95456 * 12 11 10 37 37 H 1.08994 * 109.47263 * 63.95670 * 12 11 10 38 38 H 1.09002 * 109.47153 * 59.99762 * 15 13 11 39 39 H 1.09001 * 109.46832 * 299.99953 * 15 13 11 40 40 H 1.09004 * 109.47261 * 179.97438 * 15 13 11 41 41 H 0.96998 * 120.00365 * 179.97438 * 19 18 16 42 42 H 1.08001 * 120.07335 * 179.72092 * 25 5 4 43 43 H 1.08001 * 119.93126 * 180.25575 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1958 1.2000 0.0000 4 6 3.5754 1.2069 -0.0005 5 6 4.2761 0.0001 -0.0005 6 6 5.7549 0.0002 -0.0005 7 7 6.5105 1.0608 0.0000 8 6 7.8094 0.8683 0.0004 9 6 8.2098 -0.4075 0.0009 10 6 9.6391 -0.8851 0.0020 11 7 10.1026 -1.0400 1.3873 12 6 9.3736 -2.1179 2.0689 13 6 11.5522 -1.2732 1.4345 14 1 12.0667 -0.4701 0.9068 15 6 11.8755 -2.6114 0.7670 16 6 12.0095 -1.3044 2.8701 17 1 11.2947 -1.1654 3.6677 18 6 13.3402 -1.5116 3.1654 19 7 14.2106 -1.6814 2.1942 20 14 13.9070 -1.5510 4.9449 21 1 13.2055 -2.6449 5.6636 22 1 15.3724 -1.7866 4.9926 23 1 13.5935 -0.2522 5.5931 24 16 6.7773 -1.4345 -0.0082 25 6 3.5755 -1.2067 -0.0058 26 6 2.1959 -1.1998 0.0005 27 1 -0.3633 -0.0001 -1.0276 28 1 -0.3632 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.6523 2.1332 -0.0004 31 1 4.1119 2.1443 -0.0010 32 1 8.5109 1.6896 0.0012 33 1 10.2661 -0.1562 -0.5115 34 1 9.7021 -1.8444 -0.5116 35 1 9.6862 -2.1648 3.1121 36 1 8.3027 -1.9203 2.0191 37 1 9.5907 -3.0682 1.5813 38 1 11.5447 -2.5887 -0.2714 39 1 11.3609 -3.4143 1.2948 40 1 12.9512 -2.7842 0.8016 41 1 15.1469 -1.8267 2.4019 42 1 4.1120 -2.1440 -0.0103 43 1 1.6524 -2.1331 0.0006 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093091182.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:30 Heat of formation + Delta-G solvation = 55.797796 kcal Electronic energy + Delta-G solvation = -22787.697802 eV Core-core repulsion = 19537.836095 eV Total energy + Delta-G solvation = -3249.861708 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.85976 -39.96583 -38.91982 -35.08898 -34.28938 -32.29084 -31.95799 -30.27081 -28.99951 -27.49043 -27.08870 -25.77666 -24.46174 -23.61308 -22.41996 -21.26831 -20.23347 -18.95416 -18.21424 -17.41725 -17.07766 -16.33139 -16.22270 -16.04666 -15.82651 -15.43775 -15.24398 -15.07742 -14.54541 -14.44940 -14.40651 -14.26035 -13.89375 -13.36285 -13.11254 -12.98701 -12.93696 -12.92682 -12.70158 -12.61711 -12.54092 -12.30593 -12.11197 -12.02575 -11.90696 -11.77418 -10.97664 -10.74909 -10.54114 -10.50032 -10.17906 -9.94257 -9.05616 -8.92353 -8.11701 -6.22341 -0.77625 0.22701 0.43285 0.53719 0.65865 1.42640 1.43870 1.51376 1.86585 2.42469 2.83362 2.98597 3.17517 3.41594 3.82959 3.88187 3.96482 4.05573 4.10368 4.16342 4.45779 4.46527 4.47165 4.57511 4.62463 4.77098 4.78762 4.80489 4.86374 4.88958 4.91346 5.08016 5.09683 5.11054 5.13929 5.29053 5.42829 5.48608 5.50249 5.64117 5.68258 5.75845 5.98869 6.13481 6.40480 6.63381 6.67041 6.89072 7.46366 8.93957 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.029478 B = 0.002467 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.628814 B =11349.031947 C =11487.463510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.071 4.071 3 C -0.125 4.125 4 C -0.082 4.082 5 C -0.055 4.055 6 C 0.100 3.900 7 N -0.482 5.482 8 C 0.039 3.961 9 C -0.197 4.197 10 C 0.131 3.869 11 N -0.539 5.539 12 C 0.037 3.963 13 C 0.217 3.783 14 H 0.014 0.986 15 C -0.160 4.160 16 C -0.516 4.516 17 H 0.055 0.945 18 C 0.013 3.987 19 N -0.918 5.918 20 Si 0.957 3.043 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.275 1.275 24 S 0.105 5.895 25 C -0.100 4.100 26 C -0.121 4.121 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.150 0.850 31 H 0.127 0.873 32 H 0.181 0.819 33 H 0.091 0.909 34 H 0.044 0.956 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.022 0.978 38 H 0.028 0.972 39 H 0.032 0.968 40 H 0.064 0.936 41 H 0.262 0.738 42 H 0.130 0.870 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.564 0.847 -6.840 27.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.072 4.072 3 C -0.143 4.143 4 C -0.103 4.103 5 C -0.059 4.059 6 C -0.174 4.174 7 N -0.196 5.196 8 C -0.112 4.112 9 C -0.318 4.318 10 C 0.001 3.999 11 N -0.263 5.263 12 C -0.112 4.112 13 C 0.110 3.890 14 H 0.032 0.968 15 C -0.219 4.219 16 C -0.554 4.554 17 H 0.073 0.927 18 C -0.186 4.186 19 N -0.558 5.558 20 Si 0.783 3.217 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.200 1.200 24 S 0.362 5.638 25 C -0.121 4.121 26 C -0.138 4.138 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.167 0.833 31 H 0.145 0.855 32 H 0.198 0.802 33 H 0.109 0.891 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.040 0.960 38 H 0.047 0.953 39 H 0.051 0.949 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.148 0.852 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -26.789 0.668 -6.630 27.606 hybrid contribution 2.038 -0.024 0.442 2.086 sum -24.751 0.644 -6.188 25.521 Atomic orbital electron populations 1.20907 0.88639 1.04121 1.03522 1.20499 0.97973 0.92637 0.96127 1.21299 0.92936 0.99276 1.00792 1.21347 0.94839 0.97022 0.97106 1.18004 0.86041 0.95635 1.06195 1.26185 0.97828 0.90032 1.03337 1.66544 1.04729 1.31507 1.16813 1.21664 0.90844 0.96504 1.02190 1.25852 0.99531 0.96281 1.10121 1.20392 0.88181 1.00010 0.91358 1.62293 1.06170 1.44714 1.13076 1.22262 0.97243 0.92074 0.99588 1.19093 0.82125 0.92209 0.95561 0.96846 1.22224 1.03198 0.99825 0.96700 1.21306 0.93201 1.48466 0.92441 0.92715 1.25650 0.96796 0.95059 1.01081 1.69985 1.02815 1.50085 1.32886 0.85621 0.76956 0.78609 0.80476 1.19739 1.20942 1.20024 1.84589 0.97704 1.11907 1.69613 1.21330 0.95468 0.96225 0.99055 1.21243 0.92793 0.99289 1.00521 0.89782 0.90190 0.90377 0.83270 0.85521 0.80190 0.89074 0.93763 0.92274 0.92062 0.95967 0.95320 0.94924 0.91739 0.92914 0.85188 0.82832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.82 10.01 71.24 0.71 -0.11 16 2 C -0.07 -0.96 5.89 -19.81 -0.12 -1.08 16 3 C -0.13 -1.98 9.68 22.23 0.22 -1.76 16 4 C -0.08 -1.76 9.68 22.52 0.22 -1.54 16 5 C -0.05 -1.32 5.87 -20.10 -0.12 -1.44 16 6 C 0.10 2.88 7.35 87.48 0.64 3.53 16 7 N -0.48 -15.34 10.14 -189.83 -1.93 -17.26 16 8 C 0.04 1.27 11.14 83.75 0.93 2.20 16 9 C -0.20 -6.37 5.30 24.66 0.13 -6.24 16 10 C 0.13 4.69 4.93 85.56 0.42 5.11 16 11 N -0.54 -23.05 4.73 -906.06 -4.29 -27.34 16 12 C 0.04 1.46 8.70 127.69 1.11 2.57 16 13 C 0.22 10.85 2.34 44.17 0.10 10.95 16 14 H 0.01 0.75 8.03 -2.39 -0.02 0.73 16 15 C -0.16 -7.62 8.28 71.98 0.60 -7.02 16 16 C -0.52 -28.23 7.94 25.60 0.20 -28.02 16 17 H 0.05 3.02 6.75 -2.91 -0.02 3.00 16 18 C 0.01 0.71 5.30 84.65 0.45 1.16 16 19 N -0.92 -52.22 11.32 21.45 0.24 -51.97 16 20 Si 0.96 43.77 29.54 68.60 2.03 45.79 16 21 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 22 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 23 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 24 S 0.11 2.92 20.94 -56.49 -1.18 1.74 16 25 C -0.10 -1.94 9.61 22.52 0.22 -1.73 16 26 C -0.12 -1.76 9.68 22.23 0.22 -1.55 16 27 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.08 0.42 8.08 -2.39 -0.02 0.40 16 29 H 0.08 0.44 8.08 -2.39 -0.02 0.42 16 30 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 31 H 0.13 2.86 7.82 -2.91 -0.02 2.84 16 32 H 0.18 5.39 8.06 -2.91 -0.02 5.36 16 33 H 0.09 3.21 8.00 -2.38 -0.02 3.19 16 34 H 0.04 1.55 6.94 -2.39 -0.02 1.53 16 35 H 0.06 2.53 6.53 -2.39 -0.02 2.51 16 36 H 0.06 2.17 5.88 -2.38 -0.01 2.16 16 37 H 0.02 0.86 6.28 -2.39 -0.02 0.84 16 38 H 0.03 1.19 6.75 -2.39 -0.02 1.18 16 39 H 0.03 1.50 6.39 -2.39 -0.02 1.48 16 40 H 0.06 3.42 6.07 -2.38 -0.01 3.41 16 41 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 42 H 0.13 2.28 7.30 -2.91 -0.02 2.26 16 43 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 Total: -1.00 -62.78 359.22 1.82 -60.96 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 1.01 Total: 13.06 kcal Atomic # 6 Polarization: -30.91 SS G_CDS: 5.93 Total: -24.98 kcal Atomic # 7 Polarization: -90.61 SS G_CDS: -5.97 Total: -96.58 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -1.18 Total: 1.74 kcal Total: -62.78 1.82 -60.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093091182.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.760 kcal (2) G-P(sol) polarization free energy of solvation -62.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds