Wall clock time and date at job start Tue Mar 31 2020 11:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30842 * 125.89798 * 2 1 4 4 N 1.40084 * 108.20663 * 180.25438 * 3 2 1 5 5 C 1.46495 * 126.04013 * 179.73793 * 4 3 2 6 6 C 1.50699 * 109.47131 * 269.98016 * 5 4 3 7 7 H 1.08002 * 119.99767 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00208 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99755 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00053 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47257 * 89.99976 * 10 8 6 12 12 H 1.48501 * 109.46940 * 210.00122 * 10 8 6 13 13 H 1.48499 * 109.47462 * 329.99632 * 10 8 6 14 14 C 1.34950 * 107.92381 * 359.71898 * 4 3 2 15 15 C 1.50694 * 126.12576 * 179.97438 * 14 4 3 16 16 C 1.35319 * 107.74352 * 359.97438 * 14 4 3 17 17 C 1.50706 * 126.03437 * 180.02562 * 16 14 4 18 18 C 1.53000 * 109.47116 * 90.00130 * 17 16 14 19 19 C 1.50696 * 109.47110 * 179.97438 * 18 17 16 20 20 O 1.20820 * 119.99961 * 0.02562 * 19 18 17 21 21 O 1.34228 * 119.99885 * 180.02562 * 19 18 17 22 22 C 1.45205 * 117.00187 * 179.97438 * 21 19 18 23 23 C 1.52997 * 109.47331 * 179.97438 * 22 21 19 24 24 F 1.39900 * 109.47383 * 300.00225 * 23 22 21 25 25 F 1.39901 * 109.46719 * 60.00556 * 23 22 21 26 26 H 1.08998 * 109.47393 * 270.21132 * 1 2 3 27 27 H 1.09001 * 109.46747 * 30.21871 * 1 2 3 28 28 H 1.08998 * 109.46776 * 150.21632 * 1 2 3 29 29 H 1.09001 * 109.47188 * 29.97306 * 5 4 3 30 30 H 1.08997 * 109.47530 * 149.97532 * 5 4 3 31 31 H 0.96999 * 120.00262 * 179.97438 * 9 8 6 32 32 H 1.09000 * 109.47170 * 270.02464 * 15 14 4 33 33 H 1.09004 * 109.47112 * 30.02444 * 15 14 4 34 34 H 1.09003 * 109.46820 * 150.02019 * 15 14 4 35 35 H 1.09000 * 109.46646 * 209.99544 * 17 16 14 36 36 H 1.09000 * 109.47248 * 330.00261 * 17 16 14 37 37 H 1.09000 * 109.47214 * 300.00167 * 18 17 16 38 38 H 1.09008 * 109.47142 * 59.99333 * 18 17 16 39 39 H 1.08995 * 109.46898 * 300.00792 * 22 21 19 40 40 H 1.09005 * 109.46584 * 60.00157 * 22 21 19 41 41 H 1.09001 * 109.47234 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 -0.0059 5 6 4.7899 1.5008 -0.0133 6 6 5.1881 1.7951 -1.4366 7 1 4.6186 1.3779 -2.2540 8 6 6.2795 2.5970 -1.6955 9 7 6.9727 3.1054 -0.7002 10 14 6.7735 2.9611 -3.4598 11 1 6.0756 4.1860 -3.9265 12 1 8.2419 3.1711 -3.5293 13 1 6.3958 1.8157 -4.3261 14 6 3.6143 -0.7153 -0.0031 15 6 4.8351 -1.5988 -0.0081 16 6 2.3272 -1.1329 0.0048 17 6 1.8600 -2.5657 0.0109 18 6 1.7097 -3.0470 1.4555 19 6 1.2420 -4.4795 1.4616 20 8 1.0492 -5.0565 0.4177 21 8 1.0396 -5.1145 2.6267 22 6 0.5886 -6.4929 2.5567 23 6 0.4150 -7.0454 3.9728 24 9 1.6386 -6.9888 4.6488 25 9 -0.5329 -6.2790 4.6593 26 1 -0.3634 0.0038 1.0276 27 1 -0.3633 0.8880 -0.5172 28 1 -0.3633 -0.8919 -0.5105 29 1 4.5588 2.4344 0.4996 30 1 5.6118 0.9994 0.4977 31 1 7.7407 3.6692 -0.8822 32 1 5.1240 -1.8136 -1.0369 33 1 5.6539 -1.0899 0.5006 34 1 4.6103 -2.5319 0.5087 35 1 0.8985 -2.6365 -0.4975 36 1 2.5908 -3.1883 -0.5052 37 1 2.6712 -2.9761 1.9640 38 1 0.9790 -2.4243 1.9718 39 1 -0.3644 -6.5370 2.0296 40 1 1.3274 -7.0901 2.0221 41 1 0.0769 -8.0803 3.9202 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103656283.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:42 Heat of formation + Delta-G solvation = -139.108818 kcal Electronic energy + Delta-G solvation = -25843.145646 eV Core-core repulsion = 21587.849752 eV Total energy + Delta-G solvation = -4255.295893 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.34621 -47.37954 -40.84878 -40.47096 -36.96571 -34.51602 -33.51728 -32.52008 -31.18925 -30.22148 -29.00172 -27.04842 -25.91180 -24.53530 -23.32525 -22.31325 -20.97407 -18.90254 -18.73350 -18.31283 -17.96218 -17.43551 -17.18348 -16.73944 -16.63880 -15.75952 -15.45356 -14.64206 -14.52991 -14.28861 -14.16940 -13.73003 -13.59019 -13.39881 -13.14573 -12.95946 -12.72774 -12.66995 -12.50173 -12.38337 -12.25787 -11.84037 -11.73046 -11.61418 -11.39004 -11.33144 -11.19901 -11.01147 -10.84251 -10.82313 -10.62549 -10.27510 -9.76245 -9.66982 -8.66678 -8.22722 -7.55199 -6.28433 -4.35872 2.01601 2.16431 2.73097 3.20092 3.23210 3.26391 3.30187 3.33370 3.57108 3.64943 3.96174 4.23171 4.27811 4.55097 4.84521 4.85374 5.04012 5.06909 5.16062 5.27761 5.32684 5.55675 5.59511 5.74396 5.87630 5.91274 5.95171 6.00377 6.03812 6.18896 6.28977 6.35115 6.47820 6.78302 7.00210 7.07826 7.44826 7.52057 7.64068 7.85952 8.01198 8.62717 8.72506 9.30654 10.79275 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.023299 B = 0.002429 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.463418 B =11524.929968 C =11912.060290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.053 3.947 3 N -0.296 5.296 4 N -0.324 5.324 5 C 0.256 3.744 6 C -0.536 4.536 7 H 0.064 0.936 8 C 0.066 3.934 9 N -0.892 5.892 10 Si 0.906 3.094 11 H -0.277 1.277 12 H -0.283 1.283 13 H -0.272 1.272 14 C 0.098 3.902 15 C -0.087 4.087 16 C -0.273 4.273 17 C -0.014 4.014 18 C -0.107 4.107 19 C 0.465 3.535 20 O -0.506 6.506 21 O -0.350 6.350 22 C 0.011 3.989 23 C 0.273 3.727 24 F -0.197 7.197 25 F -0.198 7.198 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.268 0.732 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.009 -20.272 7.776 24.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.112 4.112 3 N -0.120 5.120 4 N -0.103 5.103 5 C 0.139 3.861 6 C -0.574 4.574 7 H 0.082 0.918 8 C -0.138 4.138 9 N -0.529 5.529 10 Si 0.733 3.267 11 H -0.203 1.203 12 H -0.209 1.209 13 H -0.197 1.197 14 C -0.034 4.034 15 C -0.146 4.146 16 C -0.285 4.285 17 C -0.053 4.053 18 C -0.145 4.145 19 C 0.309 3.691 20 O -0.393 6.393 21 O -0.267 6.267 22 C -0.065 4.065 23 C 0.219 3.781 24 F -0.179 7.179 25 F -0.179 7.179 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.722 -18.916 7.553 23.500 hybrid contribution 0.422 -0.556 -0.901 1.140 sum -11.299 -19.472 6.652 23.475 Atomic orbital electron populations 1.20044 0.87976 1.02470 1.01954 1.21953 0.96156 0.90704 1.02356 1.77295 0.87475 1.22620 1.24561 1.49271 1.05839 1.04199 1.50962 1.19676 0.77928 0.89569 0.98966 1.21296 1.13080 1.31788 0.91282 0.91805 1.24929 0.95682 0.94997 0.98177 1.69915 1.18971 1.32876 1.31181 0.86349 0.77630 0.78989 0.83695 1.20292 1.20854 1.19669 1.20790 0.96084 0.85754 1.00803 1.20371 0.93806 0.97149 1.03247 1.19214 0.91448 0.94659 1.23197 1.19478 1.01959 0.91507 0.92307 1.21617 1.04173 0.86777 1.01902 1.24290 0.73601 0.90277 0.80913 1.90672 1.47674 1.67926 1.33022 1.86622 1.78340 1.25847 1.35884 1.24212 1.03524 0.82469 0.96260 1.22051 0.74374 0.95981 0.85683 1.93036 1.45140 1.97541 1.82142 1.93033 1.64531 1.78653 1.81677 0.91443 0.91468 0.91262 0.93003 0.93021 0.92225 0.90347 0.90775 0.91073 0.90957 0.91091 0.87538 0.87460 0.88102 0.88092 0.85102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.91 10.26 36.01 0.37 -0.54 16 2 C 0.05 0.98 7.22 -82.40 -0.59 0.38 16 3 N -0.30 -6.71 12.58 33.67 0.42 -6.29 16 4 N -0.32 -7.45 3.60 -58.32 -0.21 -7.66 16 5 C 0.26 6.52 6.00 -5.20 -0.03 6.49 16 6 C -0.54 -14.72 9.39 -34.44 -0.32 -15.04 16 7 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 8 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -25.02 13.29 55.43 0.74 -24.29 16 10 Si 0.91 21.09 29.54 -169.99 -5.02 16.07 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 14 C 0.10 1.89 6.93 -82.26 -0.57 1.32 16 15 C -0.09 -1.39 9.72 36.00 0.35 -1.04 16 16 C -0.27 -4.71 5.35 -105.05 -0.56 -5.27 16 17 C -0.01 -0.19 4.41 -27.88 -0.12 -0.31 16 18 C -0.11 -1.20 5.79 -27.89 -0.16 -1.36 16 19 C 0.47 5.35 7.96 36.00 0.29 5.64 16 20 O -0.51 -6.82 15.73 -18.75 -0.29 -7.11 16 21 O -0.35 -3.71 10.12 -39.25 -0.40 -4.10 16 22 C 0.01 0.08 5.69 37.16 0.21 0.29 16 23 C 0.27 1.64 5.63 37.16 0.21 1.85 16 24 F -0.20 -1.76 17.29 2.25 0.04 -1.72 16 25 F -0.20 -1.74 17.28 2.25 0.04 -1.70 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.07 0.81 7.25 -51.93 -0.38 0.44 16 29 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.05 1.30 7.05 -51.93 -0.37 0.93 16 31 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.07 1.22 7.08 -51.93 -0.37 0.85 16 34 H 0.07 0.90 7.77 -51.93 -0.40 0.49 16 35 H 0.07 0.94 7.20 -51.93 -0.37 0.57 16 36 H 0.07 0.96 7.73 -51.93 -0.40 0.56 16 37 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.11 1.11 8.14 -51.92 -0.42 0.69 16 39 H 0.10 0.59 8.13 -51.93 -0.42 0.17 16 40 H 0.10 0.60 8.13 -51.93 -0.42 0.18 16 41 H 0.13 0.18 8.14 -51.93 -0.42 -0.25 16 LS Contribution 364.01 15.07 5.49 5.49 Total: -1.00 -33.11 364.01 -5.87 -38.99 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -5.64 Total: -1.78 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: -1.04 Total: -5.90 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.95 Total: -38.24 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: -0.69 Total: -11.21 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.08 Total: -3.41 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.11 -5.87 -38.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103656283.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.121 kcal (2) G-P(sol) polarization free energy of solvation -33.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds