Wall clock time and date at job start Tue Mar 31 2020 11:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30842 * 125.89798 * 2 1 4 4 N 1.40084 * 108.20663 * 180.25438 * 3 2 1 5 5 C 1.46495 * 126.04013 * 179.73793 * 4 3 2 6 6 C 1.50699 * 109.47131 * 269.98016 * 5 4 3 7 7 H 1.08002 * 119.99767 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00208 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99755 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00053 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47257 * 89.99976 * 10 8 6 12 12 H 1.48501 * 109.46940 * 210.00122 * 10 8 6 13 13 H 1.48499 * 109.47462 * 329.99632 * 10 8 6 14 14 C 1.34950 * 107.92381 * 359.71898 * 4 3 2 15 15 C 1.50694 * 126.12576 * 179.97438 * 14 4 3 16 16 C 1.35319 * 107.74352 * 359.97438 * 14 4 3 17 17 C 1.50706 * 126.03437 * 180.02562 * 16 14 4 18 18 C 1.53000 * 109.47116 * 90.00130 * 17 16 14 19 19 C 1.50696 * 109.47110 * 179.97438 * 18 17 16 20 20 O 1.20820 * 119.99961 * 0.02562 * 19 18 17 21 21 O 1.34228 * 119.99885 * 180.02562 * 19 18 17 22 22 C 1.45205 * 117.00187 * 179.97438 * 21 19 18 23 23 C 1.52997 * 109.47331 * 179.97438 * 22 21 19 24 24 F 1.39900 * 109.47383 * 300.00225 * 23 22 21 25 25 F 1.39901 * 109.46719 * 60.00556 * 23 22 21 26 26 H 1.08998 * 109.47393 * 270.21132 * 1 2 3 27 27 H 1.09001 * 109.46747 * 30.21871 * 1 2 3 28 28 H 1.08998 * 109.46776 * 150.21632 * 1 2 3 29 29 H 1.09001 * 109.47188 * 29.97306 * 5 4 3 30 30 H 1.08997 * 109.47530 * 149.97532 * 5 4 3 31 31 H 0.96999 * 120.00262 * 179.97438 * 9 8 6 32 32 H 1.09000 * 109.47170 * 270.02464 * 15 14 4 33 33 H 1.09004 * 109.47112 * 30.02444 * 15 14 4 34 34 H 1.09003 * 109.46820 * 150.02019 * 15 14 4 35 35 H 1.09000 * 109.46646 * 209.99544 * 17 16 14 36 36 H 1.09000 * 109.47248 * 330.00261 * 17 16 14 37 37 H 1.09000 * 109.47214 * 300.00167 * 18 17 16 38 38 H 1.09008 * 109.47142 * 59.99333 * 18 17 16 39 39 H 1.08995 * 109.46898 * 300.00792 * 22 21 19 40 40 H 1.09005 * 109.46584 * 60.00157 * 22 21 19 41 41 H 1.09001 * 109.47234 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 -0.0059 5 6 4.7899 1.5008 -0.0133 6 6 5.1881 1.7951 -1.4366 7 1 4.6186 1.3779 -2.2540 8 6 6.2795 2.5970 -1.6955 9 7 6.9727 3.1054 -0.7002 10 14 6.7735 2.9611 -3.4598 11 1 6.0756 4.1860 -3.9265 12 1 8.2419 3.1711 -3.5293 13 1 6.3958 1.8157 -4.3261 14 6 3.6143 -0.7153 -0.0031 15 6 4.8351 -1.5988 -0.0081 16 6 2.3272 -1.1329 0.0048 17 6 1.8600 -2.5657 0.0109 18 6 1.7097 -3.0470 1.4555 19 6 1.2420 -4.4795 1.4616 20 8 1.0492 -5.0565 0.4177 21 8 1.0396 -5.1145 2.6267 22 6 0.5886 -6.4929 2.5567 23 6 0.4150 -7.0454 3.9728 24 9 1.6386 -6.9888 4.6488 25 9 -0.5329 -6.2790 4.6593 26 1 -0.3634 0.0038 1.0276 27 1 -0.3633 0.8880 -0.5172 28 1 -0.3633 -0.8919 -0.5105 29 1 4.5588 2.4344 0.4996 30 1 5.6118 0.9994 0.4977 31 1 7.7407 3.6692 -0.8822 32 1 5.1240 -1.8136 -1.0369 33 1 5.6539 -1.0899 0.5006 34 1 4.6103 -2.5319 0.5087 35 1 0.8985 -2.6365 -0.4975 36 1 2.5908 -3.1883 -0.5052 37 1 2.6712 -2.9761 1.9640 38 1 0.9790 -2.4243 1.9718 39 1 -0.3644 -6.5370 2.0296 40 1 1.3274 -7.0901 2.0221 41 1 0.0769 -8.0803 3.9202 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103656283.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:41 Heat of formation + Delta-G solvation = -158.227669 kcal Electronic energy + Delta-G solvation = -25843.974701 eV Core-core repulsion = 21587.849752 eV Total energy + Delta-G solvation = -4256.124949 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.89722 -47.95340 -42.19379 -41.48315 -37.80336 -36.12118 -34.97003 -34.20660 -32.12242 -31.28986 -30.49131 -28.29730 -27.62439 -25.75626 -24.36609 -23.64360 -21.86392 -20.33434 -20.17669 -19.07665 -18.82213 -18.54078 -18.13026 -17.81440 -17.46257 -17.22869 -16.48270 -16.28385 -15.83690 -15.49163 -14.86696 -14.76244 -14.53466 -14.43966 -14.31503 -14.19425 -14.04019 -13.87533 -13.60339 -13.40832 -13.32869 -13.24763 -13.19060 -12.86115 -12.77866 -12.65990 -12.59297 -12.23928 -12.17752 -11.97759 -11.86472 -11.71660 -11.50050 -11.14694 -10.76135 -9.85068 -9.06557 -8.35623 -6.53339 1.14904 1.15939 1.35410 1.36579 1.45750 1.48788 1.93555 1.97157 2.32703 2.77672 2.94144 3.29114 3.48766 3.59820 3.85348 3.92940 4.01764 4.15242 4.17276 4.30971 4.34451 4.38197 4.54473 4.59092 4.65935 4.72056 4.80661 4.87324 4.88971 4.92174 5.03813 5.14279 5.18212 5.32125 5.39605 5.49406 5.55100 5.79475 6.04143 6.30628 6.61313 6.67260 7.10662 7.18071 8.70676 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.023299 B = 0.002429 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.463418 B =11524.929968 C =11912.060290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.056 3.944 3 N -0.351 5.351 4 N -0.356 5.356 5 C 0.275 3.725 6 C -0.552 4.552 7 H 0.048 0.952 8 C 0.021 3.979 9 N -0.919 5.919 10 Si 0.971 3.029 11 H -0.275 1.275 12 H -0.269 1.269 13 H -0.269 1.269 14 C 0.081 3.919 15 C -0.085 4.085 16 C -0.260 4.260 17 C -0.007 4.007 18 C -0.103 4.103 19 C 0.475 3.525 20 O -0.528 6.528 21 O -0.362 6.362 22 C 0.001 3.999 23 C 0.269 3.731 24 F -0.216 7.216 25 F -0.215 7.215 26 H 0.090 0.910 27 H 0.064 0.936 28 H 0.095 0.905 29 H 0.018 0.982 30 H 0.047 0.953 31 H 0.274 0.726 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.108 0.892 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.113 0.887 38 H 0.119 0.881 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.099 -22.615 7.391 27.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.109 4.109 3 N -0.175 5.175 4 N -0.135 5.135 5 C 0.155 3.845 6 C -0.591 4.591 7 H 0.066 0.934 8 C -0.180 4.180 9 N -0.557 5.557 10 Si 0.795 3.205 11 H -0.200 1.200 12 H -0.194 1.194 13 H -0.193 1.193 14 C -0.049 4.049 15 C -0.143 4.143 16 C -0.272 4.272 17 C -0.045 4.045 18 C -0.141 4.141 19 C 0.319 3.681 20 O -0.417 6.417 21 O -0.279 6.279 22 C -0.073 4.073 23 C 0.216 3.784 24 F -0.198 7.198 25 F -0.197 7.197 26 H 0.109 0.891 27 H 0.083 0.917 28 H 0.114 0.886 29 H 0.036 0.964 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.126 0.874 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.132 0.868 38 H 0.137 0.863 39 H 0.133 0.867 40 H 0.131 0.869 41 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -12.822 -21.285 7.192 25.869 hybrid contribution 0.650 0.077 -0.719 0.973 sum -12.172 -21.209 6.472 25.296 Atomic orbital electron populations 1.20239 0.84566 1.03654 1.03818 1.22819 0.98206 0.90177 0.99716 1.77227 0.87798 1.25098 1.27367 1.49016 1.05369 1.05218 1.53931 1.19133 0.79038 0.88735 0.97571 1.21427 1.13436 1.32410 0.91782 0.93380 1.25759 0.95407 0.94461 1.02345 1.70001 1.19351 1.33175 1.33184 0.85351 0.77851 0.78685 0.78594 1.20045 1.19409 1.19319 1.21499 0.98261 0.84701 1.00432 1.20472 0.92228 0.97942 1.03635 1.19610 0.90320 0.96305 1.20984 1.19455 1.02236 0.88773 0.94056 1.21489 1.05049 0.87175 1.00366 1.24098 0.73024 0.90139 0.80796 1.90667 1.48836 1.68471 1.33729 1.86588 1.78215 1.27771 1.35316 1.24596 1.04545 0.80721 0.97470 1.22674 0.73285 0.98121 0.84334 1.92997 1.46523 1.97702 1.82544 1.92996 1.65144 1.79487 1.82066 0.89117 0.91688 0.88649 0.96356 0.93495 0.91723 0.90300 0.91908 0.87372 0.90086 0.90878 0.86841 0.86328 0.86710 0.86881 0.79754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.63 10.26 71.24 0.73 -0.90 16 2 C 0.06 2.03 7.22 43.10 0.31 2.34 16 3 N -0.35 -16.38 12.58 -47.38 -0.60 -16.97 16 4 N -0.36 -16.98 3.60 -338.42 -1.22 -18.19 16 5 C 0.27 14.72 6.00 85.63 0.51 15.23 16 6 C -0.55 -31.41 9.39 25.60 0.24 -31.17 16 7 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 8 C 0.02 1.17 5.46 84.66 0.46 1.64 16 9 N -0.92 -52.61 13.29 21.45 0.28 -52.32 16 10 Si 0.97 43.51 29.54 68.60 2.03 45.54 16 11 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 12 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 13 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 14 C 0.08 3.14 6.93 41.40 0.29 3.43 16 15 C -0.08 -2.66 9.72 71.23 0.69 -1.96 16 16 C -0.26 -8.67 5.35 -20.14 -0.11 -8.78 16 17 C -0.01 -0.16 4.41 29.85 0.13 -0.03 16 18 C -0.10 -2.05 5.79 29.85 0.17 -1.87 16 19 C 0.47 9.74 7.96 71.23 0.57 10.31 16 20 O -0.53 -12.92 15.73 21.98 0.35 -12.57 16 21 O -0.36 -6.86 10.12 -51.40 -0.52 -7.38 16 22 C 0.00 0.01 5.69 71.98 0.41 0.42 16 23 C 0.27 2.53 5.63 71.98 0.41 2.93 16 24 F -0.22 -3.47 17.29 44.97 0.78 -2.69 16 25 F -0.22 -3.38 17.28 44.97 0.78 -2.60 16 26 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.09 1.92 7.25 -2.39 -0.02 1.90 16 29 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.05 2.50 7.05 -2.39 -0.02 2.48 16 31 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 32 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.06 2.10 7.08 -2.39 -0.02 2.08 16 34 H 0.11 2.50 7.77 -2.39 -0.02 2.49 16 35 H 0.08 1.86 7.20 -2.39 -0.02 1.85 16 36 H 0.07 1.78 7.73 -2.39 -0.02 1.76 16 37 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.12 2.11 8.14 -2.38 -0.02 2.09 16 39 H 0.11 1.01 8.13 -2.39 -0.02 0.99 16 40 H 0.11 1.04 8.13 -2.38 -0.02 1.02 16 41 H 0.19 -0.25 8.14 -2.39 -0.02 -0.27 16 Total: -1.00 -74.42 364.01 7.74 -66.68 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 1.05 Total: 8.92 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: 4.82 Total: -8.41 kcal Atomic # 7 Polarization: -85.96 SS G_CDS: -1.53 Total: -87.49 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.17 Total: -19.95 kcal Atomic # 9 Polarization: -6.85 SS G_CDS: 1.55 Total: -5.29 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -74.42 7.74 -66.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103656283.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.551 kcal (2) G-P(sol) polarization free energy of solvation -74.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds