Wall clock time and date at job start Tue Mar 31 2020 11:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31306 * 122.07751 * 2 1 4 4 C 1.30218 * 117.04406 * 180.27169 * 3 2 1 5 5 C 1.47870 * 125.47381 * 179.73433 * 4 3 2 6 6 C 1.39549 * 120.14260 * 179.74472 * 5 4 3 7 7 C 1.37969 * 119.85505 * 179.69525 * 6 5 4 8 8 C 1.38347 * 120.14282 * 0.58205 * 7 6 5 9 9 C 1.38353 * 120.28767 * 359.71868 * 8 7 6 10 10 C 1.37969 * 120.14118 * 359.97438 * 9 8 7 11 11 S 1.76183 * 109.05486 * 359.75062 * 4 3 2 12 12 C 1.33722 * 122.07564 * 179.79885 * 2 1 3 13 13 C 1.50699 * 125.89274 * 0.03550 * 12 2 1 14 14 H 1.08998 * 109.46994 * 344.31359 * 13 12 2 15 15 C 1.52999 * 109.47299 * 104.31485 * 13 12 2 16 16 N 1.46896 * 109.46975 * 224.31601 * 13 12 2 17 17 C 1.46901 * 111.00143 * 181.78250 * 16 13 12 18 18 C 1.46898 * 111.00245 * 57.82579 * 16 13 12 19 19 C 1.50698 * 109.47501 * 189.99880 * 18 16 13 20 20 H 1.07998 * 120.00142 * 359.97438 * 19 18 16 21 21 C 1.37879 * 120.00253 * 180.02562 * 19 18 16 22 22 N 1.31514 * 119.99531 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00014 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47240 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.46894 * 119.99877 * 23 21 19 26 26 H 1.48506 * 109.47134 * 239.99687 * 23 21 19 27 27 H 1.08997 * 109.46658 * 270.20059 * 1 2 3 28 28 H 1.08994 * 109.46966 * 30.20155 * 1 2 3 29 29 H 1.09001 * 109.46810 * 150.20559 * 1 2 3 30 30 H 1.08007 * 120.07473 * 359.97438 * 6 5 4 31 31 H 1.08004 * 119.92846 * 180.31673 * 7 6 5 32 32 H 1.07997 * 119.86081 * 179.74045 * 8 7 6 33 33 H 1.07998 * 119.92911 * 180.02562 * 9 8 7 34 34 H 1.08000 * 120.07383 * 180.02562 * 10 9 8 35 35 H 1.09001 * 109.47461 * 300.00477 * 15 13 12 36 36 H 1.09005 * 109.46931 * 59.99778 * 15 13 12 37 37 H 1.08999 * 109.47368 * 179.97438 * 15 13 12 38 38 H 1.09004 * 109.47147 * 302.65454 * 17 16 13 39 39 H 1.08995 * 109.47431 * 62.65161 * 17 16 13 40 40 H 1.09001 * 109.47504 * 182.65408 * 17 16 13 41 41 H 1.09006 * 109.46876 * 70.00319 * 18 16 13 42 42 H 1.08998 * 109.47327 * 310.00667 * 18 16 13 43 43 H 0.97007 * 119.99417 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2044 1.1126 0.0000 4 6 3.5015 0.9984 -0.0055 5 6 4.4620 2.1226 -0.0121 6 6 5.8347 1.8716 -0.0123 7 6 6.7255 2.9250 -0.0248 8 6 6.2606 4.2281 -0.0251 9 6 4.9010 4.4838 -0.0186 10 6 3.9996 3.4393 -0.0124 11 16 3.9284 -0.7110 -0.0043 12 6 2.2172 -1.1331 0.0040 13 6 1.6519 -2.5300 0.0081 14 1 0.5983 -2.4948 0.2853 15 6 1.7919 -3.1411 -1.3875 16 7 2.3863 -3.3525 0.9787 17 6 1.8895 -4.7350 0.9799 18 6 2.3169 -2.7670 2.3242 19 6 3.2730 -3.4908 3.2369 20 1 3.8719 -4.3047 2.8558 21 6 3.3823 -3.1147 4.5589 22 7 2.6526 -2.1240 5.0231 23 14 4.5679 -4.0115 5.6901 24 1 5.2664 -5.0785 4.9295 25 1 5.5654 -3.0498 6.2244 26 1 3.8139 -4.6193 6.8159 27 1 -0.3632 0.0036 1.0277 28 1 -0.3633 0.8881 -0.5169 29 1 -0.3633 -0.8918 -0.5106 30 1 6.1990 0.8548 -0.0072 31 1 7.7882 2.7321 -0.0302 32 1 6.9621 5.0492 -0.0307 33 1 4.5444 5.5032 -0.0193 34 1 2.9384 3.6402 -0.0078 35 1 1.2470 -2.5307 -2.1078 36 1 2.8455 -3.1762 -1.6647 37 1 1.3834 -4.1516 -1.3844 38 1 0.8218 -4.7372 1.1995 39 1 2.0599 -5.1832 0.0011 40 1 2.4179 -5.3104 1.7400 41 1 1.3022 -2.8636 2.7106 42 1 2.5885 -1.7125 2.2760 43 1 2.7298 -1.8591 5.9532 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119423526.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:26 Heat of formation + Delta-G solvation = 69.016140 kcal Electronic energy + Delta-G solvation = -23755.377558 eV Core-core repulsion = 20506.089041 eV Total energy + Delta-G solvation = -3249.288517 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.71932 -38.81527 -37.11867 -33.21814 -32.45991 -31.02072 -30.83330 -29.72163 -27.78388 -26.36834 -25.19472 -24.54997 -22.66089 -22.04324 -21.39604 -20.08552 -18.38053 -17.41340 -16.80117 -16.37153 -15.70262 -15.15124 -14.76593 -14.65438 -14.46513 -14.15871 -13.49804 -13.46701 -13.30589 -13.11480 -12.94785 -12.91345 -12.23699 -12.08574 -11.98530 -11.90521 -11.75982 -11.45580 -11.20668 -11.17263 -11.06295 -10.84328 -10.69045 -10.55564 -10.46624 -9.92192 -9.34882 -9.28953 -9.18645 -8.97649 -8.66255 -8.39001 -7.74062 -7.36450 -6.02954 -4.04468 0.54297 1.39043 1.69253 1.77820 2.24435 3.16852 3.29808 3.37398 3.41612 3.90488 4.19042 4.40514 4.79907 4.90131 4.92378 5.06256 5.12200 5.19502 5.32730 5.43302 5.50742 5.53080 5.58203 5.65003 5.83051 5.86911 5.93272 5.98166 6.00051 6.06502 6.14152 6.19665 6.25988 6.38025 6.43068 6.45462 6.50069 6.66589 6.69924 6.91258 7.25757 7.29972 7.76001 8.03257 8.08900 8.14584 8.48934 9.02662 9.59417 11.07888 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.010873 B = 0.004755 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.626097 B = 5886.786913 C = 7394.231076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.048 3.952 3 N -0.457 5.457 4 C 0.069 3.931 5 C -0.008 4.008 6 C -0.101 4.101 7 C -0.118 4.118 8 C -0.115 4.115 9 C -0.123 4.123 10 C -0.079 4.079 11 S 0.159 5.841 12 C -0.173 4.173 13 C 0.149 3.851 14 H 0.053 0.947 15 C -0.141 4.141 16 N -0.536 5.536 17 C 0.036 3.964 18 C 0.191 3.809 19 C -0.506 4.506 20 H 0.064 0.936 21 C 0.057 3.943 22 N -0.896 5.896 23 Si 0.895 3.105 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.285 1.285 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.122 0.878 33 H 0.125 0.875 34 H 0.133 0.867 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.012 0.988 39 H 0.050 0.950 40 H 0.078 0.922 41 H -0.011 1.011 42 H 0.034 0.966 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.033 7.923 -13.522 15.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.086 4.086 3 N -0.171 5.171 4 C -0.205 4.205 5 C -0.012 4.012 6 C -0.122 4.122 7 C -0.136 4.136 8 C -0.134 4.134 9 C -0.141 4.141 10 C -0.100 4.100 11 S 0.418 5.582 12 C -0.295 4.295 13 C 0.038 3.962 14 H 0.071 0.929 15 C -0.199 4.199 16 N -0.261 5.261 17 C -0.113 4.113 18 C 0.066 3.934 19 C -0.545 4.545 20 H 0.082 0.918 21 C -0.145 4.145 22 N -0.535 5.535 23 Si 0.723 3.277 24 H -0.196 1.196 25 H -0.210 1.210 26 H -0.211 1.211 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.144 0.856 31 H 0.145 0.855 32 H 0.140 0.860 33 H 0.143 0.857 34 H 0.151 0.849 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.031 0.969 39 H 0.069 0.931 40 H 0.097 0.903 41 H 0.007 0.993 42 H 0.052 0.948 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.204 7.876 -13.498 15.953 hybrid contribution -1.159 -0.420 1.268 1.768 sum 2.045 7.456 -12.231 14.469 Atomic orbital electron populations 1.20333 0.87766 1.02458 1.02892 1.19856 0.97943 0.86106 1.04692 1.66267 1.04399 1.31007 1.15463 1.25650 0.92567 0.95884 1.06400 1.17867 0.90862 0.90619 1.01844 1.21224 0.91733 0.99811 0.99400 1.21008 0.99593 0.92380 1.00616 1.21243 0.95683 0.96764 0.99710 1.21105 0.93204 0.98971 1.00852 1.21277 1.00621 0.90900 0.97242 1.84912 1.06535 0.99925 1.66784 1.25614 0.95394 0.99729 1.08757 1.20007 0.95260 0.86627 0.94284 0.92911 1.21912 1.02551 1.00491 0.94907 1.62302 1.52743 1.01540 1.09549 1.22263 0.97193 0.90794 1.01014 1.19791 0.95712 0.95846 0.82032 1.21144 1.22515 1.17205 0.93615 0.91810 1.24974 0.96098 0.95250 0.98150 1.69980 1.40337 1.27939 1.15268 0.86487 0.80918 0.79689 0.80627 1.19614 1.20992 1.21123 0.90810 0.91100 0.91150 0.85622 0.85536 0.85952 0.85706 0.84886 0.92684 0.91882 0.91828 0.96929 0.93115 0.90290 0.99346 0.94835 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.12 9.76 36.01 0.35 -0.77 16 2 C 0.05 0.87 6.69 -84.40 -0.56 0.31 16 3 N -0.46 -8.52 10.11 -7.55 -0.08 -8.60 16 4 C 0.07 1.23 7.35 -14.30 -0.11 1.12 16 5 C -0.01 -0.13 5.87 -104.98 -0.62 -0.75 16 6 C -0.10 -1.38 9.61 -39.19 -0.38 -1.75 16 7 C -0.12 -1.32 10.03 -39.64 -0.40 -1.72 16 8 C -0.11 -1.18 10.04 -39.50 -0.40 -1.58 16 9 C -0.12 -1.37 10.03 -39.64 -0.40 -1.77 16 10 C -0.08 -1.09 9.68 -39.19 -0.38 -1.47 16 11 S 0.16 2.90 21.88 -107.50 -2.35 0.55 16 12 C -0.17 -3.24 3.80 -35.89 -0.14 -3.38 16 13 C 0.15 2.68 2.20 -68.87 -0.15 2.53 16 14 H 0.05 0.95 6.72 -51.93 -0.35 0.60 16 15 C -0.14 -2.02 8.88 37.16 0.33 -1.69 16 16 N -0.54 -11.33 4.51 -237.74 -1.07 -12.40 16 17 C 0.04 0.67 8.93 60.07 0.54 1.21 16 18 C 0.19 4.98 4.54 -4.98 -0.02 4.95 16 19 C -0.51 -14.15 8.42 -34.44 -0.29 -14.44 16 20 H 0.06 1.76 7.14 -52.49 -0.37 1.39 16 21 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 22 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 23 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 24 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 27 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.07 0.92 6.97 -51.93 -0.36 0.56 16 30 H 0.13 1.64 7.30 -52.48 -0.38 1.26 16 31 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 32 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.13 1.82 7.82 -52.49 -0.41 1.41 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 0.83 6.43 -51.93 -0.33 0.49 16 38 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.05 0.79 6.42 -51.93 -0.33 0.46 16 40 H 0.08 1.60 6.70 -51.93 -0.35 1.25 16 41 H -0.01 -0.32 8.12 -51.93 -0.42 -0.74 16 42 H 0.03 0.95 6.34 -51.93 -0.33 0.62 16 43 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 365.11 15.07 5.50 5.50 Total: -1.00 -31.93 365.11 -11.16 -43.09 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -6.16 Total: -0.96 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: -2.71 Total: -17.67 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: -0.41 Total: -47.23 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 2.90 SS G_CDS: -2.35 Total: 0.55 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.93 -11.16 -43.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119423526.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.104 kcal (2) G-P(sol) polarization free energy of solvation -31.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds