Wall clock time and date at job start Tue Mar 31 2020 11:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31306 * 122.07751 * 2 1 4 4 C 1.30218 * 117.04406 * 180.27169 * 3 2 1 5 5 C 1.47870 * 125.47381 * 179.73433 * 4 3 2 6 6 C 1.39549 * 120.14260 * 179.74472 * 5 4 3 7 7 C 1.37969 * 119.85505 * 179.69525 * 6 5 4 8 8 C 1.38347 * 120.14282 * 0.58205 * 7 6 5 9 9 C 1.38353 * 120.28767 * 359.71868 * 8 7 6 10 10 C 1.37969 * 120.14118 * 359.97438 * 9 8 7 11 11 S 1.76183 * 109.05486 * 359.75062 * 4 3 2 12 12 C 1.33722 * 122.07564 * 179.79885 * 2 1 3 13 13 C 1.50699 * 125.89274 * 0.03550 * 12 2 1 14 14 H 1.08998 * 109.46994 * 344.31359 * 13 12 2 15 15 C 1.52999 * 109.47299 * 104.31485 * 13 12 2 16 16 N 1.46896 * 109.46975 * 224.31601 * 13 12 2 17 17 C 1.46901 * 111.00143 * 181.78250 * 16 13 12 18 18 C 1.46898 * 111.00245 * 57.82579 * 16 13 12 19 19 C 1.50698 * 109.47501 * 189.99880 * 18 16 13 20 20 H 1.07998 * 120.00142 * 359.97438 * 19 18 16 21 21 C 1.37879 * 120.00253 * 180.02562 * 19 18 16 22 22 N 1.31514 * 119.99531 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00014 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47240 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.46894 * 119.99877 * 23 21 19 26 26 H 1.48506 * 109.47134 * 239.99687 * 23 21 19 27 27 H 1.08997 * 109.46658 * 270.20059 * 1 2 3 28 28 H 1.08994 * 109.46966 * 30.20155 * 1 2 3 29 29 H 1.09001 * 109.46810 * 150.20559 * 1 2 3 30 30 H 1.08007 * 120.07473 * 359.97438 * 6 5 4 31 31 H 1.08004 * 119.92846 * 180.31673 * 7 6 5 32 32 H 1.07997 * 119.86081 * 179.74045 * 8 7 6 33 33 H 1.07998 * 119.92911 * 180.02562 * 9 8 7 34 34 H 1.08000 * 120.07383 * 180.02562 * 10 9 8 35 35 H 1.09001 * 109.47461 * 300.00477 * 15 13 12 36 36 H 1.09005 * 109.46931 * 59.99778 * 15 13 12 37 37 H 1.08999 * 109.47368 * 179.97438 * 15 13 12 38 38 H 1.09004 * 109.47147 * 302.65454 * 17 16 13 39 39 H 1.08995 * 109.47431 * 62.65161 * 17 16 13 40 40 H 1.09001 * 109.47504 * 182.65408 * 17 16 13 41 41 H 1.09006 * 109.46876 * 70.00319 * 18 16 13 42 42 H 1.08998 * 109.47327 * 310.00667 * 18 16 13 43 43 H 0.97007 * 119.99417 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2044 1.1126 0.0000 4 6 3.5015 0.9984 -0.0055 5 6 4.4620 2.1226 -0.0121 6 6 5.8347 1.8716 -0.0123 7 6 6.7255 2.9250 -0.0248 8 6 6.2606 4.2281 -0.0251 9 6 4.9010 4.4838 -0.0186 10 6 3.9996 3.4393 -0.0124 11 16 3.9284 -0.7110 -0.0043 12 6 2.2172 -1.1331 0.0040 13 6 1.6519 -2.5300 0.0081 14 1 0.5983 -2.4948 0.2853 15 6 1.7919 -3.1411 -1.3875 16 7 2.3863 -3.3525 0.9787 17 6 1.8895 -4.7350 0.9799 18 6 2.3169 -2.7670 2.3242 19 6 3.2730 -3.4908 3.2369 20 1 3.8719 -4.3047 2.8558 21 6 3.3823 -3.1147 4.5589 22 7 2.6526 -2.1240 5.0231 23 14 4.5679 -4.0115 5.6901 24 1 5.2664 -5.0785 4.9295 25 1 5.5654 -3.0498 6.2244 26 1 3.8139 -4.6193 6.8159 27 1 -0.3632 0.0036 1.0277 28 1 -0.3633 0.8881 -0.5169 29 1 -0.3633 -0.8918 -0.5106 30 1 6.1990 0.8548 -0.0072 31 1 7.7882 2.7321 -0.0302 32 1 6.9621 5.0492 -0.0307 33 1 4.5444 5.5032 -0.0193 34 1 2.9384 3.6402 -0.0078 35 1 1.2470 -2.5307 -2.1078 36 1 2.8455 -3.1762 -1.6647 37 1 1.3834 -4.1516 -1.3844 38 1 0.8218 -4.7372 1.1995 39 1 2.0599 -5.1832 0.0011 40 1 2.4179 -5.3104 1.7400 41 1 1.3022 -2.8636 2.7106 42 1 2.5885 -1.7125 2.2760 43 1 2.7298 -1.8591 5.9532 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119423526.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:26 Heat of formation + Delta-G solvation = 50.427953 kcal Electronic energy + Delta-G solvation = -23756.183602 eV Core-core repulsion = 20506.089041 eV Total energy + Delta-G solvation = -3250.094561 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.02878 -39.88489 -38.67593 -35.06944 -33.97912 -32.26652 -31.92226 -30.97520 -29.41888 -28.00748 -26.73591 -25.83896 -23.96993 -23.53311 -22.51911 -21.64019 -19.67199 -18.84548 -18.45411 -17.93450 -16.85045 -16.75230 -16.42899 -15.88779 -15.69592 -15.52671 -15.13155 -14.81459 -14.43935 -14.34727 -14.25728 -14.05733 -13.95386 -13.48679 -13.38207 -13.28634 -13.17348 -12.88909 -12.77280 -12.49790 -12.42124 -12.36325 -12.15752 -12.10339 -11.95619 -11.81092 -11.28145 -10.68344 -10.66845 -10.47052 -10.02019 -9.92093 -9.10083 -8.99910 -8.21976 -6.31658 -0.70085 0.35742 0.44164 0.59243 0.85228 1.37476 1.38385 1.51735 1.84690 2.37679 2.88691 2.97274 3.10907 3.24250 3.73976 3.88693 3.99898 4.07956 4.19169 4.25223 4.28448 4.35302 4.49081 4.51181 4.57001 4.66455 4.70236 4.71523 4.84539 4.90945 4.93833 4.94509 5.06250 5.10582 5.13884 5.25187 5.27171 5.36717 5.50486 5.51998 5.55154 5.62867 6.00097 6.02779 6.27323 6.55753 6.72011 6.84858 7.37840 8.89377 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.010873 B = 0.004755 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.626097 B = 5886.786913 C = 7394.231076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.036 3.964 3 N -0.478 5.478 4 C 0.077 3.923 5 C -0.046 4.046 6 C -0.114 4.114 7 C -0.117 4.117 8 C -0.101 4.101 9 C -0.120 4.120 10 C -0.092 4.092 11 S 0.130 5.870 12 C -0.195 4.195 13 C 0.149 3.851 14 H 0.053 0.947 15 C -0.131 4.131 16 N -0.542 5.542 17 C 0.037 3.963 18 C 0.213 3.787 19 C -0.518 4.518 20 H 0.065 0.935 21 C 0.002 3.998 22 N -0.935 5.935 23 Si 0.965 3.035 24 H -0.260 1.260 25 H -0.281 1.281 26 H -0.278 1.278 27 H 0.062 0.938 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.121 0.879 31 H 0.156 0.844 32 H 0.162 0.838 33 H 0.155 0.845 34 H 0.125 0.875 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.081 0.919 38 H 0.015 0.985 39 H 0.088 0.912 40 H 0.059 0.941 41 H -0.047 1.047 42 H 0.005 0.995 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.516 8.506 -14.486 17.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.097 4.097 3 N -0.193 5.193 4 C -0.197 4.197 5 C -0.049 4.049 6 C -0.134 4.134 7 C -0.135 4.135 8 C -0.120 4.120 9 C -0.138 4.138 10 C -0.113 4.113 11 S 0.390 5.610 12 C -0.317 4.317 13 C 0.038 3.962 14 H 0.070 0.930 15 C -0.188 4.188 16 N -0.267 5.267 17 C -0.111 4.111 18 C 0.087 3.913 19 C -0.556 4.556 20 H 0.083 0.917 21 C -0.195 4.195 22 N -0.576 5.576 23 Si 0.790 3.210 24 H -0.183 1.183 25 H -0.207 1.207 26 H -0.204 1.204 27 H 0.081 0.919 28 H 0.105 0.895 29 H 0.108 0.892 30 H 0.139 0.861 31 H 0.174 0.826 32 H 0.179 0.821 33 H 0.173 0.827 34 H 0.143 0.857 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.034 0.966 39 H 0.107 0.893 40 H 0.078 0.922 41 H -0.029 1.029 42 H 0.023 0.977 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.673 8.431 -14.491 17.404 hybrid contribution -1.564 -0.442 1.521 2.226 sum 3.109 7.989 -12.970 15.547 Atomic orbital electron populations 1.20402 0.85804 1.04263 1.02647 1.20380 0.99433 0.85995 1.03905 1.66342 1.04802 1.31223 1.16934 1.26205 0.92859 0.96136 1.04479 1.18075 0.91314 0.90604 1.04953 1.21368 0.91438 1.00674 0.99957 1.21404 1.00678 0.92135 0.99278 1.21737 0.95944 0.97459 0.96871 1.21475 0.93351 0.99567 0.99437 1.21371 1.00947 0.91028 0.97972 1.84809 1.07297 1.01177 1.67727 1.25750 0.95304 1.00295 1.10305 1.20149 0.94600 0.86168 0.95277 0.92972 1.21862 1.02781 1.01529 0.92675 1.62201 1.54242 1.02837 1.07402 1.22300 0.96959 0.89273 1.02557 1.19331 0.93084 0.94383 0.84508 1.21469 1.22626 1.17175 0.94315 0.91707 1.25889 0.97804 0.95962 0.99894 1.70122 1.42134 1.29638 1.15726 0.85393 0.78567 0.78616 0.78443 1.18347 1.20682 1.20404 0.91919 0.89463 0.89198 0.86065 0.82626 0.82067 0.82695 0.85742 0.90643 0.92335 0.90032 0.96619 0.89342 0.92201 1.02896 0.97728 0.92915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.17 9.76 71.24 0.70 -1.48 16 2 C 0.04 1.36 6.69 41.61 0.28 1.64 16 3 N -0.48 -18.61 10.11 -177.79 -1.80 -20.41 16 4 C 0.08 2.88 7.35 87.48 0.64 3.53 16 5 C -0.05 -1.45 5.87 -20.10 -0.12 -1.57 16 6 C -0.11 -3.09 9.61 22.52 0.22 -2.87 16 7 C -0.12 -2.34 10.03 22.23 0.22 -2.12 16 8 C -0.10 -1.73 10.04 22.32 0.22 -1.50 16 9 C -0.12 -2.38 10.03 22.23 0.22 -2.16 16 10 C -0.09 -2.51 9.68 22.52 0.22 -2.29 16 11 S 0.13 4.99 21.88 -56.49 -1.24 3.75 16 12 C -0.19 -7.54 3.80 24.66 0.09 -7.44 16 13 C 0.15 5.36 2.20 44.17 0.10 5.46 16 14 H 0.05 1.88 6.72 -2.39 -0.02 1.87 16 15 C -0.13 -3.55 8.88 71.98 0.64 -2.91 16 16 N -0.54 -23.26 4.51 -906.06 -4.08 -27.34 16 17 C 0.04 1.36 8.93 127.69 1.14 2.50 16 18 C 0.21 11.57 4.54 85.56 0.39 11.96 16 19 C -0.52 -29.65 8.42 25.60 0.22 -29.43 16 20 H 0.06 3.62 7.14 -2.91 -0.02 3.60 16 21 C 0.00 0.13 5.46 84.66 0.46 0.60 16 22 N -0.94 -58.00 13.29 21.45 0.28 -57.72 16 23 Si 0.97 45.05 29.54 68.60 2.03 47.07 16 24 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 25 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 26 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 27 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.09 2.30 6.97 -2.39 -0.02 2.29 16 30 H 0.12 3.28 7.30 -2.91 -0.02 3.26 16 31 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 32 H 0.16 1.55 8.06 -2.91 -0.02 1.52 16 33 H 0.16 2.09 8.06 -2.91 -0.02 2.06 16 34 H 0.12 3.51 7.82 -2.91 -0.02 3.49 16 35 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 37 H 0.08 1.90 6.43 -2.39 -0.02 1.88 16 38 H 0.02 0.56 8.14 -2.38 -0.02 0.54 16 39 H 0.09 2.59 6.42 -2.39 -0.02 2.57 16 40 H 0.06 2.43 6.70 -2.39 -0.02 2.41 16 41 H -0.05 -2.79 8.12 -2.38 -0.02 -2.81 16 42 H 0.00 0.28 6.34 -2.39 -0.02 0.26 16 43 H 0.26 15.31 8.31 -92.70 -0.77 14.54 16 Total: -1.00 -72.23 365.11 1.84 -70.39 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 1.00 Total: 12.33 kcal Atomic # 6 Polarization: -33.72 SS G_CDS: 5.64 Total: -28.08 kcal Atomic # 7 Polarization: -99.87 SS G_CDS: -5.60 Total: -105.47 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Atomic # 16 Polarization: 4.99 SS G_CDS: -1.24 Total: 3.75 kcal Total: -72.23 1.84 -70.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119423526.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.822 kcal (2) G-P(sol) polarization free energy of solvation -72.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds