Wall clock time and date at job start Tue Mar 31 2020 11:13:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.50702 * 109.47134 * 2 1
4 4 N 1.29023 * 124.91767 * 89.99862 * 3 2 1
5 5 C 1.31778 * 117.12332 * 179.97438 * 4 3 2
6 6 C 1.50704 * 122.75131 * 179.97438 * 5 4 3
7 7 N 1.46904 * 109.46978 * 275.02484 * 6 5 4
8 8 C 1.46901 * 110.99885 * 179.97438 * 7 6 5
9 9 H 1.09003 * 109.46917 * 34.99555 * 8 7 6
10 10 C 1.53000 * 109.47114 * 155.00130 * 8 7 6
11 11 C 1.50700 * 109.46751 * 294.99690 * 10 8 7
12 12 H 1.08001 * 120.00624 * 0.02562 * 11 10 8
13 13 C 1.37882 * 119.99683 * 180.02562 * 11 10 8
14 14 N 1.31519 * 119.99939 * 0.02562 * 13 11 10
15 15 Si 1.86795 * 119.99951 * 180.02562 * 13 11 10
16 16 H 1.48501 * 109.47271 * 89.99972 * 15 13 11
17 17 H 1.48498 * 109.47291 * 209.99717 * 15 13 11
18 18 H 1.48505 * 109.47237 * 330.00119 * 15 13 11
19 19 C 1.50703 * 109.47187 * 275.00428 * 8 7 6
20 20 C 1.38235 * 120.00292 * 139.99945 * 19 8 7
21 21 C 1.38230 * 119.99899 * 179.97438 * 20 19 8
22 22 C 1.38235 * 120.00326 * 359.95697 * 21 20 19
23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20
24 24 C 1.38234 * 119.99503 * 319.97237 * 19 8 7
25 25 C 1.33645 * 114.50282 * 0.23068 * 5 4 3
26 26 S 1.70977 * 124.91391 * 269.99879 * 3 2 1
27 27 H 1.09003 * 109.47052 * 300.00016 * 1 2 3
28 28 H 1.08995 * 109.46873 * 60.00255 * 1 2 3
29 29 H 1.09000 * 109.47549 * 180.02562 * 1 2 3
30 30 H 1.08998 * 109.46973 * 239.99257 * 2 1 3
31 31 H 1.09005 * 109.46905 * 119.99589 * 2 1 3
32 32 H 1.09003 * 109.47289 * 155.02302 * 6 5 4
33 33 H 1.08998 * 109.47108 * 35.02596 * 6 5 4
34 34 H 1.00896 * 111.00043 * 56.04436 * 7 6 5
35 35 H 1.08995 * 109.46916 * 54.99821 * 10 8 7
36 36 H 1.09003 * 109.46852 * 175.00189 * 10 8 7
37 37 H 0.97001 * 119.99717 * 180.02562 * 14 13 11
38 38 H 1.08001 * 119.99730 * 359.97438 * 20 19 8
39 39 H 1.08000 * 120.00376 * 179.97438 * 21 20 19
40 40 H 1.08000 * 120.00616 * 179.72578 * 22 21 20
41 41 H 1.08001 * 120.00299 * 179.97438 * 23 22 21
42 42 H 1.07997 * 120.00455 * 0.02562 * 24 19 8
43 43 H 1.07997 * 126.04080 * 179.76371 * 25 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0324 1.4208 0.0000
4 7 2.2785 2.1171 1.0580
5 6 2.7142 3.3479 0.8792
6 6 3.0403 4.2717 2.0244
7 7 1.8148 4.9453 2.4744
8 6 2.0947 5.8555 3.5928
9 1 3.0784 6.3053 3.4578
10 6 1.0320 6.9555 3.6334
11 6 1.1397 7.8038 2.3925
12 1 1.8906 7.5805 1.6490
13 6 0.2794 8.8652 2.2062
14 7 -0.6347 9.1375 3.1118
15 14 0.4123 9.9163 0.6678
16 1 -0.4544 9.3486 -0.3960
17 1 -0.0248 11.3017 0.9755
18 1 1.8219 9.9341 0.2006
19 6 2.0687 5.0840 4.8871
20 6 3.0002 5.3545 5.8720
21 6 2.9760 4.6471 7.0593
22 6 2.0197 3.6697 7.2622
23 6 1.0873 3.4002 6.2779
24 6 1.1129 4.1060 5.0896
25 6 2.8382 3.7116 -0.4008
26 16 2.3586 2.3434 -1.4020
27 1 -0.3633 0.5139 0.8900
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3634 -1.0276 0.0005
30 1 1.8933 -0.5139 -0.8899
31 1 1.8933 -0.5138 0.8901
32 1 3.7646 5.0168 1.6953
33 1 3.4612 3.6949 2.8480
34 1 1.1041 4.2740 2.7240
35 1 0.0417 6.5025 3.6791
36 1 1.1876 7.5787 4.5141
37 1 -1.2401 9.8839 2.9805
38 1 3.7469 6.1186 5.7137
39 1 3.7040 4.8581 7.8286
40 1 2.0034 3.1139 8.1881
41 1 0.3403 2.6363 6.4362
42 1 0.3851 3.8947 4.3202
43 1 3.1741 4.6737 -0.7583
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000130436258.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:13:20
Heat of formation + Delta-G solvation = 59.135456 kcal
Electronic energy + Delta-G solvation = -23421.297148 eV
Core-core repulsion = 20171.580172 eV
Total energy + Delta-G solvation = -3249.716976 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 316.130 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-39.89211 -39.09046 -36.05266 -34.23367 -32.69604 -31.31187 -30.55844 -29.36890
-28.57744 -25.95844 -25.09594 -23.92593 -22.33670 -21.83554 -21.51322 -19.76147
-19.49562 -17.49012 -16.97010 -16.02942 -15.52855 -15.26078 -14.83461 -14.62261
-14.57512 -14.41340 -13.94431 -13.84853 -13.44217 -13.08934 -12.99593 -12.65309
-12.46459 -12.36371 -12.02924 -11.97070 -11.72771 -11.48999 -11.27717 -11.07930
-10.98588 -10.75363 -10.62017 -10.50461 -10.12635 -9.63070 -9.54645 -9.30081
-9.02758 -8.67080 -8.57401 -8.25518 -8.17967 -7.69944 -5.87747 -3.85967
0.82051 1.44139 1.74491 1.75200 1.81469 2.88655 3.39145 3.45055
3.47735 4.03938 4.16502 4.56274 4.77129 4.92422 5.03477 5.08192
5.19820 5.23538 5.30355 5.35484 5.42935 5.49358 5.49946 5.51889
5.61401 5.75783 5.82721 5.87483 5.91860 6.00949 6.03934 6.12859
6.32100 6.35520 6.41819 6.79128 6.81855 6.82760 7.01204 7.36835
7.49711 7.66210 7.86267 7.96268 8.02811 8.13888 8.56348 9.18504
9.74991 11.24147
Molecular weight = 316.13amu
Principal moments of inertia in cm(-1)
A = 0.007798 B = 0.005042 C = 0.003407
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3589.593963 B = 5551.769894 C = 8217.346196
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.044 4.044
3 C 0.046 3.954
4 N -0.464 5.464
5 C 0.077 3.923
6 C 0.133 3.867
7 N -0.653 5.653
8 C 0.130 3.870
9 H 0.076 0.924
10 C 0.042 3.958
11 C -0.489 4.489
12 H 0.059 0.941
13 C 0.051 3.949
14 N -0.902 5.902
15 Si 0.890 3.110
16 H -0.283 1.283
17 H -0.290 1.290
18 H -0.276 1.276
19 C -0.092 4.092
20 C -0.117 4.117
21 C -0.122 4.122
22 C -0.136 4.136
23 C -0.118 4.118
24 C -0.114 4.114
25 C -0.231 4.231
26 S 0.096 5.904
27 H 0.063 0.937
28 H 0.057 0.943
29 H 0.065 0.935
30 H 0.082 0.918
31 H 0.091 0.909
32 H 0.085 0.915
33 H 0.039 0.961
34 H 0.337 0.663
35 H 0.019 0.981
36 H 0.020 0.980
37 H 0.257 0.743
38 H 0.119 0.881
39 H 0.115 0.885
40 H 0.114 0.886
41 H 0.115 0.885
42 H 0.119 0.881
43 H 0.179 0.821
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.710 -17.709 -2.746 19.136
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.085 4.085
3 C -0.232 4.232
4 N -0.179 5.179
5 C -0.054 4.054
6 C 0.001 3.999
7 N -0.284 5.284
8 C 0.020 3.980
9 H 0.094 0.906
10 C 0.005 3.995
11 C -0.527 4.527
12 H 0.077 0.923
13 C -0.148 4.148
14 N -0.542 5.542
15 Si 0.719 3.281
16 H -0.209 1.209
17 H -0.216 1.216
18 H -0.201 1.201
19 C -0.094 4.094
20 C -0.135 4.135
21 C -0.140 4.140
22 C -0.155 4.155
23 C -0.136 4.136
24 C -0.133 4.133
25 C -0.370 4.370
26 S 0.350 5.650
27 H 0.082 0.918
28 H 0.077 0.923
29 H 0.084 0.916
30 H 0.100 0.900
31 H 0.110 0.890
32 H 0.103 0.897
33 H 0.057 0.943
34 H 0.157 0.843
35 H 0.037 0.963
36 H 0.039 0.961
37 H 0.067 0.933
38 H 0.137 0.863
39 H 0.133 0.867
40 H 0.132 0.868
41 H 0.133 0.867
42 H 0.137 0.863
43 H 0.196 0.804
Dipole moment (debyes) X Y Z Total
from point charges 6.471 -17.502 -3.773 19.037
hybrid contribution 0.208 0.705 0.606 0.953
sum 6.679 -16.797 -3.167 18.351
Atomic orbital electron populations
1.21770 0.93518 1.02305 1.02985 1.20175 0.96749 0.87724 1.03853
1.26962 1.03667 1.01671 0.90946 1.66064 1.14201 1.06070 1.31578
1.20241 0.99994 0.90631 0.94547 1.20469 0.94030 0.93254 0.92175
1.60748 1.07683 1.21635 1.38318 1.20994 1.02077 0.92612 0.82282
0.90601 1.19089 0.92363 0.90750 0.97288 1.21093 1.16156 1.10878
1.04603 0.92267 1.24991 0.95740 0.97757 0.96320 1.69972 1.20030
1.29770 1.34474 0.86633 0.78122 0.79586 0.83806 1.20944 1.21600
1.20075 1.21149 0.94211 0.95509 0.98536 1.21067 0.99165 0.99609
0.93691 1.21064 0.98881 0.96795 0.97280 1.21002 0.96410 0.99045
0.98994 1.21043 0.98817 0.99804 0.93974 1.20947 0.98439 0.96414
0.97482 1.26841 1.11048 1.03581 0.95552 1.83811 1.61425 1.06353
1.13402 0.91751 0.92342 0.91601 0.89965 0.89033 0.89674 0.94253
0.84287 0.96297 0.96149 0.93304 0.86266 0.86687 0.86829 0.86662
0.86338 0.80392
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.28 9.90 37.16 0.37 -0.91 16
2 C -0.04 -0.40 6.52 -27.88 -0.18 -0.59 16
3 C 0.05 0.59 6.64 -13.46 -0.09 0.50 16
4 N -0.46 -7.13 10.53 -8.05 -0.08 -7.22 16
5 C 0.08 1.21 6.25 -84.22 -0.53 0.68 16
6 C 0.13 2.18 5.92 -4.97 -0.03 2.15 16
7 N -0.65 -12.46 5.94 -109.21 -0.65 -13.11 16
8 C 0.13 2.62 2.17 -68.86 -0.15 2.47 16
9 H 0.08 1.52 7.66 -51.93 -0.40 1.12 16
10 C 0.04 1.08 4.63 -27.88 -0.13 0.95 16
11 C -0.49 -13.59 8.84 -34.44 -0.30 -13.89 16
12 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16
13 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16
14 N -0.90 -27.33 13.29 55.43 0.74 -26.60 16
15 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16
16 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16
17 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16
18 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16
19 C -0.09 -1.67 4.71 -104.62 -0.49 -2.16 16
20 C -0.12 -1.92 9.67 -39.59 -0.38 -2.30 16
21 C -0.12 -1.77 10.05 -39.59 -0.40 -2.17 16
22 C -0.14 -1.92 10.05 -39.58 -0.40 -2.31 16
23 C -0.12 -1.78 10.05 -39.58 -0.40 -2.17 16
24 C -0.11 -1.96 9.12 -39.58 -0.36 -2.33 16
25 C -0.23 -3.29 11.12 29.12 0.32 -2.97 16
26 S 0.10 1.13 23.18 -107.50 -2.49 -1.36 16
27 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16
28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16
30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16
31 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16
32 H 0.08 1.33 8.01 -51.93 -0.42 0.92 16
33 H 0.04 0.65 8.00 -51.93 -0.42 0.23 16
34 H 0.34 6.42 6.34 -39.29 -0.25 6.18 16
35 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16
36 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16
37 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16
38 H 0.12 1.82 8.04 -52.49 -0.42 1.40 16
39 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16
40 H 0.11 1.29 8.06 -52.49 -0.42 0.86 16
41 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16
42 H 0.12 2.03 6.51 -52.49 -0.34 1.69 16
43 H 0.18 2.34 8.06 -52.49 -0.42 1.92 16
LS Contribution 374.70 15.07 5.65 5.65
Total: -1.00 -31.62 374.70 -11.54 -43.16
By element:
Atomic # 1 Polarization: 12.57 SS G_CDS: -6.43 Total: 6.14 kcal
Atomic # 6 Polarization: -20.42 SS G_CDS: -3.25 Total: -23.67 kcal
Atomic # 7 Polarization: -46.93 SS G_CDS: 0.00 Total: -46.93 kcal
Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal
Atomic # 16 Polarization: 1.13 SS G_CDS: -2.49 Total: -1.36 kcal
Total LS contribution 5.65 Total: 5.65 kcal
Total: -31.62 -11.54 -43.16 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000130436258.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 102.297 kcal
(2) G-P(sol) polarization free energy of solvation -31.619 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.678 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.542 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.161 kcal
(6) G-S(sol) free energy of system = (1) + (5) 59.135 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds