Wall clock time and date at job start Tue Mar 31 2020 11:13:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.50702 * 109.47134 * 2 1
4 4 N 1.29023 * 124.91767 * 89.99862 * 3 2 1
5 5 C 1.31778 * 117.12332 * 179.97438 * 4 3 2
6 6 C 1.50704 * 122.75131 * 179.97438 * 5 4 3
7 7 N 1.46904 * 109.46978 * 275.02484 * 6 5 4
8 8 C 1.46901 * 110.99885 * 179.97438 * 7 6 5
9 9 H 1.09003 * 109.46917 * 34.99555 * 8 7 6
10 10 C 1.53000 * 109.47114 * 155.00130 * 8 7 6
11 11 C 1.50700 * 109.46751 * 294.99690 * 10 8 7
12 12 H 1.08001 * 120.00624 * 0.02562 * 11 10 8
13 13 C 1.37882 * 119.99683 * 180.02562 * 11 10 8
14 14 N 1.31519 * 119.99939 * 0.02562 * 13 11 10
15 15 Si 1.86795 * 119.99951 * 180.02562 * 13 11 10
16 16 H 1.48501 * 109.47271 * 89.99972 * 15 13 11
17 17 H 1.48498 * 109.47291 * 209.99717 * 15 13 11
18 18 H 1.48505 * 109.47237 * 330.00119 * 15 13 11
19 19 C 1.50703 * 109.47187 * 275.00428 * 8 7 6
20 20 C 1.38235 * 120.00292 * 139.99945 * 19 8 7
21 21 C 1.38230 * 119.99899 * 179.97438 * 20 19 8
22 22 C 1.38235 * 120.00326 * 359.95697 * 21 20 19
23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20
24 24 C 1.38234 * 119.99503 * 319.97237 * 19 8 7
25 25 C 1.33645 * 114.50282 * 0.23068 * 5 4 3
26 26 S 1.70977 * 124.91391 * 269.99879 * 3 2 1
27 27 H 1.09003 * 109.47052 * 300.00016 * 1 2 3
28 28 H 1.08995 * 109.46873 * 60.00255 * 1 2 3
29 29 H 1.09000 * 109.47549 * 180.02562 * 1 2 3
30 30 H 1.08998 * 109.46973 * 239.99257 * 2 1 3
31 31 H 1.09005 * 109.46905 * 119.99589 * 2 1 3
32 32 H 1.09003 * 109.47289 * 155.02302 * 6 5 4
33 33 H 1.08998 * 109.47108 * 35.02596 * 6 5 4
34 34 H 1.00896 * 111.00043 * 56.04436 * 7 6 5
35 35 H 1.08995 * 109.46916 * 54.99821 * 10 8 7
36 36 H 1.09003 * 109.46852 * 175.00189 * 10 8 7
37 37 H 0.97001 * 119.99717 * 180.02562 * 14 13 11
38 38 H 1.08001 * 119.99730 * 359.97438 * 20 19 8
39 39 H 1.08000 * 120.00376 * 179.97438 * 21 20 19
40 40 H 1.08000 * 120.00616 * 179.72578 * 22 21 20
41 41 H 1.08001 * 120.00299 * 179.97438 * 23 22 21
42 42 H 1.07997 * 120.00455 * 0.02562 * 24 19 8
43 43 H 1.07997 * 126.04080 * 179.76371 * 25 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0324 1.4208 0.0000
4 7 2.2785 2.1171 1.0580
5 6 2.7142 3.3479 0.8792
6 6 3.0403 4.2717 2.0244
7 7 1.8148 4.9453 2.4744
8 6 2.0947 5.8555 3.5928
9 1 3.0784 6.3053 3.4578
10 6 1.0320 6.9555 3.6334
11 6 1.1397 7.8038 2.3925
12 1 1.8906 7.5805 1.6490
13 6 0.2794 8.8652 2.2062
14 7 -0.6347 9.1375 3.1118
15 14 0.4123 9.9163 0.6678
16 1 -0.4544 9.3486 -0.3960
17 1 -0.0248 11.3017 0.9755
18 1 1.8219 9.9341 0.2006
19 6 2.0687 5.0840 4.8871
20 6 3.0002 5.3545 5.8720
21 6 2.9760 4.6471 7.0593
22 6 2.0197 3.6697 7.2622
23 6 1.0873 3.4002 6.2779
24 6 1.1129 4.1060 5.0896
25 6 2.8382 3.7116 -0.4008
26 16 2.3586 2.3434 -1.4020
27 1 -0.3633 0.5139 0.8900
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3634 -1.0276 0.0005
30 1 1.8933 -0.5139 -0.8899
31 1 1.8933 -0.5138 0.8901
32 1 3.7646 5.0168 1.6953
33 1 3.4612 3.6949 2.8480
34 1 1.1041 4.2740 2.7240
35 1 0.0417 6.5025 3.6791
36 1 1.1876 7.5787 4.5141
37 1 -1.2401 9.8839 2.9805
38 1 3.7469 6.1186 5.7137
39 1 3.7040 4.8581 7.8286
40 1 2.0034 3.1139 8.1881
41 1 0.3403 2.6363 6.4362
42 1 0.3851 3.8947 4.3202
43 1 3.1741 4.6737 -0.7583
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000130436258.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:13:19
Heat of formation + Delta-G solvation = 41.053037 kcal
Electronic energy + Delta-G solvation = -23422.081260 eV
Core-core repulsion = 20171.580172 eV
Total energy + Delta-G solvation = -3250.501088 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 316.130 amu
Computer time = 1.09 seconds
Orbital eigenvalues (eV)
-41.02522 -40.35576 -37.47693 -35.30617 -34.60817 -32.66925 -31.77360 -30.64744
-30.19986 -27.33828 -26.29948 -25.41364 -23.78026 -23.26988 -22.51502 -21.19022
-20.65782 -18.70317 -18.47275 -17.77691 -16.75151 -16.57088 -16.43125 -16.07205
-15.74248 -15.44777 -15.12096 -15.02815 -14.78171 -14.37837 -14.20295 -14.12856
-13.89695 -13.64309 -13.45267 -13.12376 -13.03470 -12.80461 -12.59940 -12.53683
-12.34758 -12.22929 -12.06860 -11.98050 -11.75052 -11.48023 -11.14077 -10.59057
-10.50060 -10.33176 -9.80489 -9.74389 -9.51246 -9.18953 -8.09710 -6.15440
-0.21690 0.45079 0.49355 0.52200 0.76760 1.41270 1.42794 1.53059
1.75842 2.46791 2.91852 3.08245 3.23142 3.52681 3.86421 3.97094
3.99075 4.13359 4.17732 4.24200 4.29489 4.33766 4.36553 4.46281
4.57848 4.67587 4.72376 4.74015 4.81966 4.97690 4.99260 5.05798
5.14212 5.16924 5.20488 5.34479 5.46429 5.56944 5.60067 5.61707
5.68862 5.88035 6.15252 6.24937 6.37632 6.51697 6.82626 6.97457
7.50039 9.02524
Molecular weight = 316.13amu
Principal moments of inertia in cm(-1)
A = 0.007798 B = 0.005042 C = 0.003407
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3589.593963 B = 5551.769894 C = 8217.346196
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.045 4.045
3 C 0.041 3.959
4 N -0.496 5.496
5 C 0.058 3.942
6 C 0.142 3.858
7 N -0.664 5.664
8 C 0.146 3.854
9 H 0.073 0.927
10 C 0.054 3.946
11 C -0.497 4.497
12 H 0.061 0.939
13 C -0.005 4.005
14 N -0.941 5.941
15 Si 0.959 3.041
16 H -0.279 1.279
17 H -0.286 1.286
18 H -0.262 1.262
19 C -0.115 4.115
20 C -0.131 4.131
21 C -0.120 4.120
22 C -0.130 4.130
23 C -0.122 4.122
24 C -0.132 4.132
25 C -0.251 4.251
26 S 0.152 5.848
27 H 0.040 0.960
28 H 0.057 0.943
29 H 0.090 0.910
30 H 0.111 0.889
31 H 0.094 0.906
32 H 0.088 0.912
33 H 0.036 0.964
34 H 0.334 0.666
35 H -0.014 1.014
36 H -0.009 1.009
37 H 0.258 0.742
38 H 0.124 0.876
39 H 0.147 0.853
40 H 0.151 0.849
41 H 0.140 0.860
42 H 0.106 0.894
43 H 0.184 0.816
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.615 -19.491 -3.375 21.196
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.085 4.085
3 C -0.238 4.238
4 N -0.211 5.211
5 C -0.073 4.073
6 C 0.010 3.990
7 N -0.295 5.295
8 C 0.036 3.964
9 H 0.091 0.909
10 C 0.016 3.984
11 C -0.536 4.536
12 H 0.079 0.921
13 C -0.201 4.201
14 N -0.583 5.583
15 Si 0.784 3.216
16 H -0.205 1.205
17 H -0.212 1.212
18 H -0.187 1.187
19 C -0.117 4.117
20 C -0.150 4.150
21 C -0.138 4.138
22 C -0.148 4.148
23 C -0.140 4.140
24 C -0.151 4.151
25 C -0.391 4.391
26 S 0.407 5.593
27 H 0.060 0.940
28 H 0.076 0.924
29 H 0.109 0.891
30 H 0.129 0.871
31 H 0.113 0.887
32 H 0.106 0.894
33 H 0.054 0.946
34 H 0.154 0.846
35 H 0.004 0.996
36 H 0.009 0.991
37 H 0.067 0.933
38 H 0.142 0.858
39 H 0.165 0.835
40 H 0.168 0.832
41 H 0.158 0.842
42 H 0.124 0.876
43 H 0.201 0.799
Dipole moment (debyes) X Y Z Total
from point charges 7.396 -19.299 -4.417 21.135
hybrid contribution -0.093 1.162 0.819 1.424
sum 7.303 -18.138 -3.598 19.881
Atomic orbital electron populations
1.21760 0.93140 1.03610 1.01796 1.20386 0.96919 0.85807 1.05437
1.27644 1.02276 1.02887 0.90945 1.66067 1.15696 1.06262 1.33113
1.20134 1.01446 0.91089 0.94667 1.20350 0.92726 0.93353 0.92563
1.60634 1.09048 1.21952 1.37899 1.20511 0.99574 0.91904 0.84426
0.90854 1.18855 0.92476 0.91740 0.95317 1.21437 1.15864 1.11093
1.05183 0.92065 1.25876 0.95403 0.99269 0.99575 1.70117 1.21024
1.30520 1.36618 0.85541 0.78704 0.77615 0.79698 1.20529 1.21229
1.18667 1.20955 0.96041 0.96597 0.98121 1.21261 0.99124 1.00315
0.94293 1.21448 0.99406 0.95987 0.96933 1.21460 0.95073 0.98433
0.99796 1.21367 0.99630 0.99796 0.93173 1.20995 0.98364 0.97176
0.98540 1.27057 1.11075 1.05008 0.95974 1.83541 1.59987 1.04171
1.11594 0.94049 0.92387 0.89076 0.87059 0.88732 0.89375 0.94611
0.84640 0.99588 0.99103 0.93296 0.85766 0.83487 0.83177 0.84246
0.87551 0.79875
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.28 9.90 71.98 0.71 -1.56 16
2 C -0.04 -0.73 6.52 29.85 0.19 -0.54 16
3 C 0.04 0.99 6.64 88.52 0.59 1.57 16
4 N -0.50 -15.27 10.53 -179.40 -1.89 -17.16 16
5 C 0.06 1.85 6.25 41.53 0.26 2.11 16
6 C 0.14 4.82 5.92 85.56 0.51 5.33 16
7 N -0.66 -26.67 5.94 -499.44 -2.97 -29.63 16
8 C 0.15 6.20 2.17 44.17 0.10 6.30 16
9 H 0.07 3.08 7.66 -2.39 -0.02 3.07 16
10 C 0.05 2.90 4.63 29.85 0.14 3.03 16
11 C -0.50 -28.59 8.84 25.60 0.23 -28.37 16
12 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16
13 C -0.01 -0.31 5.46 84.66 0.46 0.15 16
14 N -0.94 -58.88 13.29 21.45 0.28 -58.60 16
15 Si 0.96 45.82 29.54 68.60 2.03 47.84 16
16 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16
17 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16
18 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16
19 C -0.12 -4.34 4.71 -19.87 -0.09 -4.44 16
20 C -0.13 -4.33 9.67 22.27 0.22 -4.12 16
21 C -0.12 -3.23 10.05 22.27 0.22 -3.01 16
22 C -0.13 -3.31 10.05 22.27 0.22 -3.08 16
23 C -0.12 -3.52 10.05 22.27 0.22 -3.30 16
24 C -0.13 -4.69 9.12 22.27 0.20 -4.48 16
25 C -0.25 -7.09 11.12 66.78 0.74 -6.35 16
26 S 0.15 3.34 23.18 -56.49 -1.31 2.03 16
27 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16
28 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16
29 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16
30 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16
31 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16
32 H 0.09 2.86 8.01 -2.39 -0.02 2.84 16
33 H 0.04 1.23 8.00 -2.39 -0.02 1.21 16
34 H 0.33 13.57 6.34 -89.70 -0.57 13.00 16
35 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16
36 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16
37 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16
38 H 0.12 3.84 8.04 -2.91 -0.02 3.81 16
39 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16
40 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16
41 H 0.14 3.27 8.06 -2.91 -0.02 3.24 16
42 H 0.11 3.92 6.51 -2.91 -0.02 3.90 16
43 H 0.18 4.79 8.06 -2.91 -0.02 4.76 16
Total: -1.00 -70.75 374.70 1.50 -69.25
By element:
Atomic # 1 Polarization: 26.59 SS G_CDS: 0.43 Total: 27.02 kcal
Atomic # 6 Polarization: -45.68 SS G_CDS: 4.92 Total: -40.76 kcal
Atomic # 7 Polarization: -100.82 SS G_CDS: -4.57 Total: -105.39 kcal
Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.84 kcal
Atomic # 16 Polarization: 3.34 SS G_CDS: -1.31 Total: 2.03 kcal
Total: -70.75 1.50 -69.25 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000130436258.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 110.304 kcal
(2) G-P(sol) polarization free energy of solvation -70.749 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.554 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.499 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.250 kcal
(6) G-S(sol) free energy of system = (1) + (5) 41.053 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.09 seconds