Wall clock time and date at job start Tue Mar 31 2020 11:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50705 * 109.46957 * 2 1 4 4 N 1.29036 * 124.91222 * 90.00438 * 3 2 1 5 5 C 1.31784 * 117.11970 * 179.97438 * 4 3 2 6 6 C 1.50703 * 122.74300 * 179.97438 * 5 4 3 7 7 N 1.46901 * 109.47196 * 275.01980 * 6 5 4 8 8 C 1.46896 * 110.99913 * 180.02562 * 7 6 5 9 9 H 1.09002 * 109.47220 * 325.00418 * 8 7 6 10 10 C 1.53000 * 109.47053 * 205.00062 * 8 7 6 11 11 C 1.50703 * 109.46801 * 65.00291 * 10 8 7 12 12 H 1.07998 * 120.00413 * 0.02562 * 11 10 8 13 13 C 1.37878 * 119.99680 * 179.97438 * 11 10 8 14 14 N 1.31512 * 120.00285 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99651 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47144 * 90.00302 * 15 13 11 17 17 H 1.48507 * 109.46867 * 209.99975 * 15 13 11 18 18 H 1.48496 * 109.47175 * 330.00050 * 15 13 11 19 19 C 1.50703 * 109.46997 * 85.00438 * 8 7 6 20 20 C 1.38233 * 119.99662 * 39.72399 * 19 8 7 21 21 C 1.38238 * 119.99748 * 179.80858 * 20 19 8 22 22 C 1.38238 * 119.99869 * 0.39869 * 21 20 19 23 23 C 1.38232 * 120.00036 * 359.86136 * 22 21 20 24 24 C 1.38232 * 120.00031 * 359.94639 * 23 22 21 25 25 C 1.33641 * 114.50115 * 0.23106 * 5 4 3 26 26 S 1.70970 * 124.91865 * 269.99960 * 3 2 1 27 27 H 1.08999 * 109.47078 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46799 * 299.99747 * 1 2 3 29 29 H 1.08999 * 109.47150 * 59.99590 * 1 2 3 30 30 H 1.08995 * 109.47226 * 240.00851 * 2 1 3 31 31 H 1.08996 * 109.47561 * 119.99782 * 2 1 3 32 32 H 1.09007 * 109.46443 * 155.02196 * 6 5 4 33 33 H 1.08990 * 109.47128 * 35.02819 * 6 5 4 34 34 H 1.00896 * 111.00002 * 303.96390 * 7 6 5 35 35 H 1.09002 * 109.47069 * 185.00015 * 10 8 7 36 36 H 1.08991 * 109.47625 * 305.00335 * 10 8 7 37 37 H 0.96998 * 119.99928 * 179.97438 * 14 13 11 38 38 H 1.08003 * 120.00479 * 0.02562 * 20 19 8 39 39 H 1.07997 * 120.00351 * 180.22988 * 21 20 19 40 40 H 1.08003 * 120.00083 * 179.82956 * 22 21 20 41 41 H 1.08001 * 119.99800 * 179.97438 * 23 22 21 42 42 H 1.08005 * 120.00320 * 180.02562 * 24 23 22 43 43 H 1.08004 * 126.03244 * 179.76715 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2786 2.1171 1.0581 5 6 2.7142 3.3480 0.8795 6 6 3.0403 4.2715 2.0248 7 7 1.8148 4.9451 2.4749 8 6 2.0950 5.8560 3.5927 9 1 2.8779 5.4306 4.2206 10 6 0.8246 6.0505 4.4229 11 6 0.4374 4.7420 5.0624 12 1 1.0375 3.8600 4.8939 13 6 -0.6826 4.6710 5.8634 14 7 -1.4127 5.7453 6.0698 15 14 -1.1623 3.0492 6.6566 16 1 -0.5093 2.9360 7.9856 17 1 -2.6370 2.9969 6.8236 18 1 -0.7219 1.9256 5.7914 19 6 2.5514 7.1873 3.0535 20 6 1.9474 7.7220 1.9310 21 6 2.3634 8.9450 1.4388 22 6 3.3888 9.6293 2.0643 23 6 3.9963 9.0920 3.1836 24 6 3.5777 7.8709 3.6782 25 6 2.8380 3.7117 -0.4005 26 16 2.3585 2.3436 -1.4019 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.7646 5.0167 1.6956 33 1 3.4613 3.6947 2.8482 34 1 1.3704 5.4344 1.7126 35 1 1.0078 6.7939 5.1987 36 1 0.0166 6.3919 3.7760 37 1 -2.2008 5.6952 6.6330 38 1 1.1483 7.1861 1.4406 39 1 1.8891 9.3646 0.5639 40 1 3.7156 10.5835 1.6781 41 1 4.7977 9.6264 3.6720 42 1 4.0521 7.4512 4.5530 43 1 3.1740 4.6740 -0.7579 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130436495.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:23 Heat of formation + Delta-G solvation = 61.179165 kcal Electronic energy + Delta-G solvation = -23410.794347 eV Core-core repulsion = 20161.165993 eV Total energy + Delta-G solvation = -3249.628354 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.88662 -39.14447 -36.09336 -34.17985 -32.66983 -31.33178 -30.61627 -29.39958 -28.52766 -26.01460 -25.03454 -23.94499 -22.35256 -21.86299 -21.44878 -19.72921 -19.55217 -17.72865 -16.82477 -16.01987 -15.49668 -15.23583 -14.89676 -14.61597 -14.57148 -14.33953 -14.11459 -13.72671 -13.32834 -13.09600 -13.06991 -12.77343 -12.41434 -12.34425 -12.16118 -12.00592 -11.72041 -11.29501 -11.19423 -11.14859 -10.96852 -10.73377 -10.61427 -10.45941 -10.13579 -9.60551 -9.45243 -9.30865 -8.98223 -8.69300 -8.64377 -8.24100 -8.20908 -7.70145 -5.84057 -3.81697 0.78512 1.42627 1.67609 1.68487 1.78797 2.92057 3.42948 3.48787 3.56158 4.08784 4.09954 4.61423 4.81698 4.92866 5.05995 5.14711 5.15316 5.17251 5.21939 5.27408 5.41853 5.46559 5.50661 5.53937 5.71366 5.75968 5.82627 5.84219 5.88528 5.97726 6.13253 6.18398 6.29095 6.30229 6.37166 6.74065 6.75069 6.80447 6.97030 7.30595 7.49047 7.66985 7.92843 7.98260 8.03534 8.16856 8.60082 9.23683 9.79624 11.27832 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.007507 B = 0.005404 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3728.897445 B = 5180.423618 C = 8361.085051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.045 4.045 3 C 0.055 3.945 4 N -0.446 5.446 5 C 0.091 3.909 6 C 0.131 3.869 7 N -0.649 5.649 8 C 0.130 3.870 9 H 0.077 0.923 10 C 0.043 3.957 11 C -0.487 4.487 12 H 0.061 0.939 13 C 0.051 3.949 14 N -0.904 5.904 15 Si 0.888 3.112 16 H -0.284 1.284 17 H -0.290 1.290 18 H -0.273 1.273 19 C -0.091 4.091 20 C -0.120 4.120 21 C -0.119 4.119 22 C -0.137 4.137 23 C -0.121 4.121 24 C -0.116 4.116 25 C -0.261 4.261 26 S 0.089 5.911 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.038 0.962 33 H 0.087 0.913 34 H 0.332 0.668 35 H 0.020 0.980 36 H 0.018 0.982 37 H 0.257 0.743 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.120 0.880 43 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.204 -2.680 -15.814 19.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.086 4.086 3 C -0.224 4.224 4 N -0.159 5.159 5 C -0.041 4.041 6 C -0.001 4.001 7 N -0.280 5.280 8 C 0.021 3.979 9 H 0.095 0.905 10 C 0.006 3.994 11 C -0.526 4.526 12 H 0.079 0.921 13 C -0.148 4.148 14 N -0.545 5.545 15 Si 0.717 3.283 16 H -0.210 1.210 17 H -0.216 1.216 18 H -0.198 1.198 19 C -0.093 4.093 20 C -0.138 4.138 21 C -0.137 4.137 22 C -0.155 4.155 23 C -0.139 4.139 24 C -0.135 4.135 25 C -0.400 4.400 26 S 0.343 5.657 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.112 0.888 32 H 0.056 0.944 33 H 0.106 0.894 34 H 0.152 0.848 35 H 0.038 0.962 36 H 0.037 0.963 37 H 0.066 0.934 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.138 0.862 43 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 9.704 -3.597 -15.878 18.954 hybrid contribution 0.201 0.704 0.663 0.988 sum 9.905 -2.893 -15.215 18.384 Atomic orbital electron populations 1.21778 0.93381 1.02406 1.03121 1.20207 0.96904 0.87624 1.03914 1.27129 1.03033 1.01733 0.90524 1.66093 1.13019 1.05910 1.30891 1.20291 0.98771 0.91250 0.93782 1.20490 0.92464 0.93620 0.93548 1.60619 1.22646 1.33967 1.10738 1.21011 1.00927 0.84403 0.91605 0.90483 1.19085 0.89547 0.97375 0.93403 1.21124 1.09464 0.95378 1.26590 0.92081 1.24980 0.96723 0.96052 0.97066 1.69970 1.17068 1.27989 1.39447 0.86638 0.77301 0.84806 0.79547 1.21039 1.21605 1.19769 1.21192 0.94394 0.99194 0.94505 1.20965 0.99794 0.96084 0.96995 1.21050 0.97415 0.95271 0.99978 1.21012 0.97686 0.99836 0.96979 1.21086 1.00082 0.95993 0.96727 1.21094 0.97292 0.95302 0.99810 1.26790 1.13421 1.03983 0.95839 1.83748 1.61674 1.06476 1.13766 0.91564 0.91324 0.92526 0.90014 0.88765 0.94389 0.89420 0.84815 0.96206 0.96330 0.93371 0.86287 0.86643 0.86795 0.86628 0.86176 0.80981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.89 37.16 0.37 -1.17 16 2 C -0.05 -0.48 6.52 -27.88 -0.18 -0.66 16 3 C 0.05 0.75 6.64 -13.45 -0.09 0.66 16 4 N -0.45 -7.51 10.53 -8.05 -0.08 -7.60 16 5 C 0.09 1.44 6.25 -84.22 -0.53 0.91 16 6 C 0.13 2.14 5.92 -4.97 -0.03 2.11 16 7 N -0.65 -12.35 5.94 -109.22 -0.65 -12.99 16 8 C 0.13 2.61 2.17 -68.87 -0.15 2.46 16 9 H 0.08 1.56 7.66 -51.93 -0.40 1.16 16 10 C 0.04 1.11 4.63 -27.88 -0.13 0.98 16 11 C -0.49 -13.86 8.84 -34.44 -0.30 -14.16 16 12 H 0.06 1.75 7.74 -52.49 -0.41 1.34 16 13 C 0.05 1.50 5.46 -17.82 -0.10 1.40 16 14 N -0.90 -27.71 13.29 55.43 0.74 -26.97 16 15 Si 0.89 22.59 29.54 -169.99 -5.02 17.57 16 16 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 17 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 18 H -0.27 -6.92 7.11 56.52 0.40 -6.51 16 19 C -0.09 -1.59 4.71 -104.62 -0.49 -2.08 16 20 C -0.12 -1.93 9.12 -39.58 -0.36 -2.29 16 21 C -0.12 -1.66 10.05 -39.58 -0.40 -2.06 16 22 C -0.14 -1.82 10.05 -39.58 -0.40 -2.21 16 23 C -0.12 -1.67 10.05 -39.59 -0.40 -2.07 16 24 C -0.12 -1.85 9.67 -39.58 -0.38 -2.23 16 25 C -0.26 -3.40 11.12 29.12 0.32 -3.08 16 26 S 0.09 1.02 23.18 -107.50 -2.49 -1.47 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.04 0.56 7.96 -51.93 -0.41 0.15 16 33 H 0.09 1.52 8.05 -51.93 -0.42 1.11 16 34 H 0.33 5.98 6.33 -39.29 -0.25 5.73 16 35 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.12 1.88 6.50 -52.48 -0.34 1.54 16 39 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.11 1.21 8.06 -52.48 -0.42 0.79 16 41 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 42 H 0.12 1.79 8.04 -52.48 -0.42 1.37 16 43 H 0.17 1.87 8.06 -52.48 -0.42 1.44 16 LS Contribution 374.69 15.07 5.65 5.65 Total: -1.00 -32.60 374.69 -11.54 -44.14 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -6.43 Total: 5.18 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: -3.25 Total: -23.50 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: 0.00 Total: -47.56 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -2.49 Total: -1.47 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.60 -11.54 -44.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130436495.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.322 kcal (2) G-P(sol) polarization free energy of solvation -32.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds