Wall clock time and date at job start Tue Mar 31 2020 11:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50705 * 109.46957 * 2 1 4 4 N 1.29036 * 124.91222 * 90.00438 * 3 2 1 5 5 C 1.31784 * 117.11970 * 179.97438 * 4 3 2 6 6 C 1.50703 * 122.74300 * 179.97438 * 5 4 3 7 7 N 1.46901 * 109.47196 * 275.01980 * 6 5 4 8 8 C 1.46896 * 110.99913 * 180.02562 * 7 6 5 9 9 H 1.09002 * 109.47220 * 325.00418 * 8 7 6 10 10 C 1.53000 * 109.47053 * 205.00062 * 8 7 6 11 11 C 1.50703 * 109.46801 * 65.00291 * 10 8 7 12 12 H 1.07998 * 120.00413 * 0.02562 * 11 10 8 13 13 C 1.37878 * 119.99680 * 179.97438 * 11 10 8 14 14 N 1.31512 * 120.00285 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99651 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47144 * 90.00302 * 15 13 11 17 17 H 1.48507 * 109.46867 * 209.99975 * 15 13 11 18 18 H 1.48496 * 109.47175 * 330.00050 * 15 13 11 19 19 C 1.50703 * 109.46997 * 85.00438 * 8 7 6 20 20 C 1.38233 * 119.99662 * 39.72399 * 19 8 7 21 21 C 1.38238 * 119.99748 * 179.80858 * 20 19 8 22 22 C 1.38238 * 119.99869 * 0.39869 * 21 20 19 23 23 C 1.38232 * 120.00036 * 359.86136 * 22 21 20 24 24 C 1.38232 * 120.00031 * 359.94639 * 23 22 21 25 25 C 1.33641 * 114.50115 * 0.23106 * 5 4 3 26 26 S 1.70970 * 124.91865 * 269.99960 * 3 2 1 27 27 H 1.08999 * 109.47078 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46799 * 299.99747 * 1 2 3 29 29 H 1.08999 * 109.47150 * 59.99590 * 1 2 3 30 30 H 1.08995 * 109.47226 * 240.00851 * 2 1 3 31 31 H 1.08996 * 109.47561 * 119.99782 * 2 1 3 32 32 H 1.09007 * 109.46443 * 155.02196 * 6 5 4 33 33 H 1.08990 * 109.47128 * 35.02819 * 6 5 4 34 34 H 1.00896 * 111.00002 * 303.96390 * 7 6 5 35 35 H 1.09002 * 109.47069 * 185.00015 * 10 8 7 36 36 H 1.08991 * 109.47625 * 305.00335 * 10 8 7 37 37 H 0.96998 * 119.99928 * 179.97438 * 14 13 11 38 38 H 1.08003 * 120.00479 * 0.02562 * 20 19 8 39 39 H 1.07997 * 120.00351 * 180.22988 * 21 20 19 40 40 H 1.08003 * 120.00083 * 179.82956 * 22 21 20 41 41 H 1.08001 * 119.99800 * 179.97438 * 23 22 21 42 42 H 1.08005 * 120.00320 * 180.02562 * 24 23 22 43 43 H 1.08004 * 126.03244 * 179.76715 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2786 2.1171 1.0581 5 6 2.7142 3.3480 0.8795 6 6 3.0403 4.2715 2.0248 7 7 1.8148 4.9451 2.4749 8 6 2.0950 5.8560 3.5927 9 1 2.8779 5.4306 4.2206 10 6 0.8246 6.0505 4.4229 11 6 0.4374 4.7420 5.0624 12 1 1.0375 3.8600 4.8939 13 6 -0.6826 4.6710 5.8634 14 7 -1.4127 5.7453 6.0698 15 14 -1.1623 3.0492 6.6566 16 1 -0.5093 2.9360 7.9856 17 1 -2.6370 2.9969 6.8236 18 1 -0.7219 1.9256 5.7914 19 6 2.5514 7.1873 3.0535 20 6 1.9474 7.7220 1.9310 21 6 2.3634 8.9450 1.4388 22 6 3.3888 9.6293 2.0643 23 6 3.9963 9.0920 3.1836 24 6 3.5777 7.8709 3.6782 25 6 2.8380 3.7117 -0.4005 26 16 2.3585 2.3436 -1.4019 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.7646 5.0167 1.6956 33 1 3.4613 3.6947 2.8482 34 1 1.3704 5.4344 1.7126 35 1 1.0078 6.7939 5.1987 36 1 0.0166 6.3919 3.7760 37 1 -2.2008 5.6952 6.6330 38 1 1.1483 7.1861 1.4406 39 1 1.8891 9.3646 0.5639 40 1 3.7156 10.5835 1.6781 41 1 4.7977 9.6264 3.6720 42 1 4.0521 7.4512 4.5530 43 1 3.1740 4.6740 -0.7579 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130436495.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:22 Heat of formation + Delta-G solvation = 41.868279 kcal Electronic energy + Delta-G solvation = -23411.631730 eV Core-core repulsion = 20161.165993 eV Total energy + Delta-G solvation = -3250.465737 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.02091 -40.35873 -37.49439 -35.32493 -34.61837 -32.69028 -31.76140 -30.66896 -30.14707 -27.37169 -26.32574 -25.42235 -23.77017 -23.25167 -22.48636 -21.19890 -20.64263 -18.95675 -18.37928 -17.69580 -16.66090 -16.60303 -16.37210 -16.15908 -15.74548 -15.43646 -15.27179 -14.94663 -14.63044 -14.45229 -14.20804 -14.13670 -13.82308 -13.73525 -13.51583 -13.24326 -13.05042 -12.78901 -12.60740 -12.53290 -12.36328 -12.23371 -12.00788 -11.96354 -11.74461 -11.51448 -11.14412 -10.51584 -10.49479 -10.33002 -9.79678 -9.72737 -9.51192 -9.15823 -8.11765 -6.16573 -0.23369 0.46110 0.49715 0.52847 0.75875 1.37947 1.39452 1.52072 1.79233 2.45469 2.92394 3.11919 3.20821 3.50406 3.85307 3.93336 4.00566 4.17614 4.21144 4.23524 4.31182 4.31733 4.32997 4.46946 4.53000 4.65287 4.68820 4.74519 4.84060 4.95832 4.98286 5.07667 5.14630 5.16318 5.18318 5.33124 5.45101 5.57147 5.60983 5.63130 5.70057 5.87101 6.15996 6.24793 6.39048 6.57871 6.92744 6.96184 7.48748 9.00139 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.007507 B = 0.005404 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3728.897445 B = 5180.423618 C = 8361.085051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.047 4.047 3 C 0.036 3.964 4 N -0.496 5.496 5 C 0.062 3.938 6 C 0.141 3.859 7 N -0.667 5.667 8 C 0.147 3.853 9 H 0.066 0.934 10 C 0.055 3.945 11 C -0.497 4.497 12 H 0.053 0.947 13 C -0.003 4.003 14 N -0.938 5.938 15 Si 0.954 3.046 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.273 1.273 19 C -0.113 4.113 20 C -0.133 4.133 21 C -0.119 4.119 22 C -0.129 4.129 23 C -0.119 4.119 24 C -0.132 4.132 25 C -0.259 4.259 26 S 0.161 5.839 27 H 0.089 0.911 28 H 0.032 0.968 29 H 0.063 0.937 30 H 0.116 0.884 31 H 0.087 0.913 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.336 0.664 35 H -0.009 1.009 36 H -0.011 1.011 37 H 0.259 0.741 38 H 0.113 0.887 39 H 0.143 0.857 40 H 0.150 0.850 41 H 0.145 0.855 42 H 0.120 0.880 43 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.292 -2.528 -18.195 21.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.088 4.088 3 C -0.242 4.242 4 N -0.211 5.211 5 C -0.070 4.070 6 C 0.010 3.990 7 N -0.299 5.299 8 C 0.037 3.963 9 H 0.085 0.915 10 C 0.017 3.983 11 C -0.536 4.536 12 H 0.071 0.929 13 C -0.199 4.199 14 N -0.580 5.580 15 Si 0.780 3.220 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.198 1.198 19 C -0.115 4.115 20 C -0.151 4.151 21 C -0.136 4.136 22 C -0.147 4.147 23 C -0.137 4.137 24 C -0.151 4.151 25 C -0.399 4.399 26 S 0.417 5.583 27 H 0.108 0.892 28 H 0.052 0.948 29 H 0.082 0.918 30 H 0.134 0.866 31 H 0.106 0.894 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.156 0.844 35 H 0.009 0.991 36 H 0.008 0.992 37 H 0.068 0.932 38 H 0.131 0.869 39 H 0.161 0.839 40 H 0.168 0.832 41 H 0.163 0.837 42 H 0.138 0.862 43 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 10.806 -3.456 -18.272 21.507 hybrid contribution -0.116 0.699 1.296 1.477 sum 10.690 -2.756 -16.976 20.250 Atomic orbital electron populations 1.21755 0.93390 1.03519 1.01665 1.20380 0.96789 0.86315 1.05280 1.27640 1.02496 1.02912 0.91145 1.66066 1.14899 1.06901 1.33245 1.20166 1.01078 0.91365 0.94418 1.20315 0.91487 0.93690 0.93521 1.60450 1.24652 1.33972 1.10779 1.20464 0.97530 0.86731 0.91580 0.91541 1.18844 0.91474 0.95201 0.92762 1.21411 1.09405 0.96136 1.26636 0.92916 1.25810 0.96800 0.99528 0.97754 1.70093 1.17582 1.30043 1.40300 0.85604 0.77177 0.80376 0.78812 1.19808 1.20883 1.19794 1.20902 0.96279 0.98271 0.96031 1.21030 0.99915 0.97311 0.96889 1.21385 0.97441 0.94159 1.00660 1.21470 0.96465 1.00757 0.96038 1.21434 1.00469 0.94978 0.96838 1.21244 0.97340 0.96447 1.00067 1.27105 1.11771 1.05555 0.95475 1.83420 1.59726 1.04125 1.11073 0.89201 0.94836 0.91810 0.86625 0.89408 0.92620 0.91501 0.84413 0.99079 0.99224 0.93215 0.86903 0.83875 0.83206 0.83707 0.86196 0.78827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.89 71.98 0.71 -2.16 16 2 C -0.05 -0.93 6.52 29.85 0.19 -0.73 16 3 C 0.04 0.96 6.64 88.52 0.59 1.54 16 4 N -0.50 -17.09 10.53 -179.39 -1.89 -18.98 16 5 C 0.06 1.97 6.25 41.52 0.26 2.23 16 6 C 0.14 4.83 5.92 85.56 0.51 5.33 16 7 N -0.67 -26.77 5.94 -499.46 -2.96 -29.73 16 8 C 0.15 6.27 2.17 44.17 0.10 6.36 16 9 H 0.07 2.90 7.66 -2.39 -0.02 2.88 16 10 C 0.05 2.99 4.63 29.85 0.14 3.12 16 11 C -0.50 -29.70 8.84 25.60 0.23 -29.48 16 12 H 0.05 3.17 7.74 -2.91 -0.02 3.15 16 13 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 14 N -0.94 -59.43 13.29 21.45 0.28 -59.15 16 15 Si 0.95 47.66 29.54 68.60 2.03 49.69 16 16 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 17 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 18 H -0.27 -13.54 7.11 99.48 0.71 -12.83 16 19 C -0.11 -4.06 4.71 -19.87 -0.09 -4.15 16 20 C -0.13 -4.28 9.12 22.27 0.20 -4.07 16 21 C -0.12 -3.05 10.05 22.27 0.22 -2.82 16 22 C -0.13 -3.00 10.05 22.27 0.22 -2.77 16 23 C -0.12 -3.03 10.05 22.27 0.22 -2.81 16 24 C -0.13 -4.21 9.67 22.27 0.22 -3.99 16 25 C -0.26 -6.42 11.12 66.78 0.74 -5.68 16 26 S 0.16 3.32 23.18 -56.49 -1.31 2.01 16 27 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.06 1.66 7.96 -2.38 -0.02 1.65 16 33 H 0.07 2.50 8.05 -2.39 -0.02 2.48 16 34 H 0.34 12.70 6.33 -89.70 -0.57 12.13 16 35 H -0.01 -0.54 8.14 -2.39 -0.02 -0.55 16 36 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 37 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 38 H 0.11 3.67 6.50 -2.91 -0.02 3.65 16 39 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 40 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 41 H 0.15 2.79 8.06 -2.91 -0.02 2.76 16 42 H 0.12 3.68 8.04 -2.91 -0.02 3.65 16 43 H 0.19 3.76 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -74.25 374.69 1.50 -72.75 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: 0.43 Total: 23.19 kcal Atomic # 6 Polarization: -44.70 SS G_CDS: 4.92 Total: -39.78 kcal Atomic # 7 Polarization: -103.29 SS G_CDS: -4.57 Total: -107.86 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 2.03 Total: 49.69 kcal Atomic # 16 Polarization: 3.32 SS G_CDS: -1.31 Total: 2.01 kcal Total: -74.25 1.50 -72.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130436495.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.617 kcal (2) G-P(sol) polarization free energy of solvation -74.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds