Wall clock time and date at job start Tue Mar 31 2020 11:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29027 * 124.91624 * 2 1 4 4 C 1.31784 * 117.12700 * 180.02562 * 3 2 1 5 5 C 1.50700 * 122.75233 * 180.02562 * 4 3 2 6 6 C 1.33645 * 114.49482 * 359.97438 * 4 3 2 7 7 C 1.50704 * 126.03273 * 180.02562 * 6 4 3 8 8 N 1.46904 * 109.46978 * 90.00141 * 7 6 4 9 9 C 1.46901 * 110.99885 * 179.97438 * 8 7 6 10 10 H 1.09003 * 109.46917 * 34.99555 * 9 8 7 11 11 C 1.53000 * 109.47114 * 155.00130 * 9 8 7 12 12 C 1.50700 * 109.46751 * 294.99690 * 11 9 8 13 13 H 1.08001 * 120.00624 * 0.02562 * 12 11 9 14 14 C 1.37882 * 119.99683 * 180.02562 * 12 11 9 15 15 N 1.31519 * 119.99939 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 119.99951 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47213 * 60.00024 * 16 14 12 18 18 H 1.48500 * 109.46990 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47122 * 299.99903 * 16 14 12 20 20 C 1.50703 * 109.47187 * 275.00428 * 9 8 7 21 21 C 1.38235 * 120.00292 * 139.99945 * 20 9 8 22 22 C 1.38230 * 119.99899 * 179.97438 * 21 20 9 23 23 C 1.38235 * 120.00326 * 359.95697 * 22 21 20 24 24 C 1.38234 * 119.99814 * 359.97438 * 23 22 21 25 25 C 1.38234 * 119.99503 * 319.97237 * 20 9 8 26 26 S 1.70979 * 124.91857 * 180.32086 * 2 1 3 27 27 H 1.08998 * 109.47662 * 90.02331 * 1 2 3 28 28 H 1.09001 * 109.46970 * 210.02874 * 1 2 3 29 29 H 1.09002 * 109.46695 * 330.01780 * 1 2 3 30 30 H 1.08999 * 109.46733 * 269.99539 * 5 4 3 31 31 H 1.09000 * 109.46949 * 29.99681 * 5 4 3 32 32 H 1.08997 * 109.47255 * 150.00025 * 5 4 3 33 33 H 1.09003 * 109.47289 * 329.99958 * 7 6 4 34 34 H 1.08998 * 109.47108 * 210.00253 * 7 6 4 35 35 H 1.00896 * 111.00043 * 56.04436 * 8 7 6 36 36 H 1.08995 * 109.46916 * 54.99821 * 11 9 8 37 37 H 1.09003 * 109.46852 * 175.00189 * 11 9 8 38 38 H 0.97001 * 119.99717 * 180.02562 * 15 14 12 39 39 H 1.08001 * 119.99730 * 359.97438 * 21 20 9 40 40 H 1.08000 * 120.00376 * 179.97438 * 22 21 20 41 41 H 1.08000 * 120.00616 * 179.72578 * 23 22 21 42 42 H 1.08001 * 120.00299 * 179.97438 * 24 23 22 43 43 H 1.07997 * 120.00455 * 0.02562 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 -0.0005 5 6 4.5307 2.0246 0.0000 6 6 3.9354 -0.4006 -0.0004 7 6 5.3575 -0.8994 -0.0004 8 7 5.8195 -1.0614 1.3846 9 6 7.2050 -1.5480 1.4239 10 1 7.7642 -1.1198 0.5919 11 6 7.8552 -1.1300 2.7443 12 6 7.9586 0.3724 2.7997 13 1 7.5964 0.9695 1.9758 14 6 8.5156 0.9849 3.9023 15 7 8.9571 0.2578 4.9054 16 14 8.6431 2.8472 3.9714 17 1 7.2847 3.4402 3.8796 18 1 9.2743 3.2529 5.2529 19 1 9.4712 3.3290 2.8368 20 6 7.2129 -3.0510 1.3136 21 6 8.1738 -3.6828 0.5465 22 6 8.1813 -5.0614 0.4458 23 6 7.2285 -5.8083 1.1131 24 6 6.2686 -5.1767 1.8814 25 6 6.2596 -3.7978 1.9802 26 16 2.4857 -1.4019 -0.0079 27 1 -0.3634 -0.0004 -1.0276 28 1 -0.3633 -0.8897 0.5143 29 1 -0.3633 0.8902 0.5136 30 1 4.7666 2.3013 -1.0276 31 1 4.0907 2.8789 0.5145 32 1 5.4434 1.7219 0.5133 33 1 5.9949 -0.1799 -0.5143 34 1 5.4058 -1.8595 -0.5142 35 1 5.2066 -1.6744 1.9009 36 1 7.2467 -1.4833 3.5767 37 1 8.8521 -1.5655 2.8122 38 1 9.3486 0.6887 5.6812 39 1 8.9186 -3.0992 0.0257 40 1 8.9317 -5.5550 -0.1539 41 1 7.2317 -6.8852 1.0309 42 1 5.5239 -5.7602 2.4024 43 1 5.5090 -3.3043 2.5796 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130466312.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:50 Heat of formation + Delta-G solvation = 58.919035 kcal Electronic energy + Delta-G solvation = -23615.705245 eV Core-core repulsion = 20365.978884 eV Total energy + Delta-G solvation = -3249.726360 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.84117 -39.22405 -36.28546 -33.63043 -32.51412 -31.15577 -30.61710 -29.19896 -28.91226 -27.49343 -24.67134 -23.44393 -22.59345 -22.16719 -21.89448 -19.75708 -18.71532 -17.76990 -16.97700 -16.06999 -15.38571 -15.17821 -14.81253 -14.77673 -14.42481 -14.04554 -13.73585 -13.63731 -13.33872 -13.17795 -13.04540 -12.75622 -12.54136 -12.41173 -12.18240 -12.04480 -11.92651 -11.59769 -11.26072 -11.04650 -10.97998 -10.80179 -10.67014 -10.54056 -10.18175 -9.68554 -9.50658 -9.20336 -9.03787 -8.66026 -8.45726 -8.26285 -8.24636 -7.78847 -5.89115 -3.87665 0.80858 1.42834 1.65984 1.66874 1.84400 2.92043 3.40561 3.44910 3.47799 4.07446 4.14746 4.55597 4.77948 4.99515 5.07890 5.15206 5.16767 5.22804 5.27615 5.31026 5.32579 5.41553 5.48460 5.69852 5.76685 5.79865 5.82200 5.86793 5.87911 6.06283 6.11359 6.20298 6.27362 6.33346 6.59666 6.71775 6.73644 6.75654 6.93111 7.28604 7.42499 7.61161 7.88368 7.90070 7.94853 8.10628 8.53489 9.16366 9.73648 11.22654 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.007823 B = 0.005673 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3578.420712 B = 4934.829380 C = 7853.420555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.040 3.960 3 N -0.471 5.471 4 C 0.082 3.918 5 C -0.082 4.082 6 C -0.206 4.206 7 C 0.136 3.864 8 N -0.651 5.651 9 C 0.129 3.871 10 H 0.077 0.923 11 C 0.043 3.957 12 C -0.490 4.490 13 H 0.059 0.941 14 C 0.053 3.947 15 N -0.902 5.902 16 Si 0.889 3.111 17 H -0.277 1.277 18 H -0.291 1.291 19 H -0.279 1.279 20 C -0.093 4.093 21 C -0.116 4.116 22 C -0.121 4.121 23 C -0.136 4.136 24 C -0.118 4.118 25 C -0.120 4.120 26 S 0.097 5.903 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.033 0.967 35 H 0.334 0.666 36 H 0.019 0.981 37 H 0.020 0.980 38 H 0.258 0.742 39 H 0.120 0.880 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.116 0.884 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.814 -7.724 -11.778 18.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.239 4.239 3 N -0.186 5.186 4 C -0.049 4.049 5 C -0.142 4.142 6 C -0.327 4.327 7 C 0.005 3.995 8 N -0.282 5.282 9 C 0.020 3.980 10 H 0.095 0.905 11 C 0.006 3.994 12 C -0.529 4.529 13 H 0.077 0.923 14 C -0.147 4.147 15 N -0.542 5.542 16 Si 0.717 3.283 17 H -0.203 1.203 18 H -0.217 1.217 19 H -0.205 1.205 20 C -0.095 4.095 21 C -0.135 4.135 22 C -0.139 4.139 23 C -0.154 4.154 24 C -0.136 4.136 25 C -0.138 4.138 26 S 0.352 5.648 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.051 0.949 35 H 0.154 0.846 36 H 0.037 0.963 37 H 0.038 0.962 38 H 0.068 0.932 39 H 0.138 0.862 40 H 0.134 0.866 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.048 -7.588 -11.539 18.327 hybrid contribution 0.525 0.656 0.034 0.841 sum -11.524 -6.932 -11.504 17.697 Atomic orbital electron populations 1.20389 0.85530 1.04014 1.03485 1.26823 1.01403 0.91120 1.04524 1.66141 1.04836 1.31621 1.16015 1.20176 0.89689 0.94375 1.00671 1.20445 0.97120 0.94301 1.02301 1.25644 0.99262 0.95364 1.12421 1.20324 0.87764 0.99062 0.92389 1.60758 1.02981 1.54642 1.09836 1.21019 0.88787 0.85262 1.02946 0.90479 1.19082 0.94679 0.96695 0.88942 1.21034 1.37600 0.91323 1.02901 0.92257 1.24981 0.96056 0.97724 0.95936 1.69957 1.41901 1.34994 1.07379 0.86713 0.78213 0.86430 0.76938 1.20271 1.21667 1.20474 1.21167 0.94456 0.98847 0.94991 1.21082 0.98604 0.94415 0.99389 1.21085 0.98717 0.94151 0.99941 1.21017 0.96241 0.99291 0.98873 1.21057 0.98854 0.94581 0.99151 1.20964 0.99429 0.93817 0.99585 1.83830 0.98531 1.12888 1.69592 0.89953 0.90318 0.89457 0.91338 0.90976 0.88703 0.88985 0.94862 0.84629 0.96290 0.96173 0.93232 0.86196 0.86620 0.86761 0.86586 0.86309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.46 36.01 0.38 -0.27 16 2 C 0.04 0.52 7.39 -13.46 -0.10 0.42 16 3 N -0.47 -7.41 10.53 -8.05 -0.08 -7.49 16 4 C 0.08 1.32 6.74 -84.22 -0.57 0.75 16 5 C -0.08 -1.24 9.82 36.01 0.35 -0.88 16 6 C -0.21 -3.12 6.10 -35.92 -0.22 -3.34 16 7 C 0.14 2.08 5.41 -4.97 -0.03 2.06 16 8 N -0.65 -11.67 5.94 -109.21 -0.65 -12.32 16 9 C 0.13 2.48 2.17 -68.86 -0.15 2.33 16 10 H 0.08 1.47 7.66 -51.93 -0.40 1.07 16 11 C 0.04 1.07 4.63 -27.88 -0.13 0.94 16 12 C -0.49 -13.28 8.84 -34.44 -0.30 -13.58 16 13 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 14 C 0.05 1.49 5.46 -17.82 -0.10 1.40 16 15 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 16 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 C -0.09 -1.58 4.71 -104.62 -0.49 -2.08 16 21 C -0.12 -1.81 9.67 -39.59 -0.38 -2.19 16 22 C -0.12 -1.65 10.05 -39.59 -0.40 -2.05 16 23 C -0.14 -1.79 10.05 -39.58 -0.40 -2.19 16 24 C -0.12 -1.65 10.05 -39.58 -0.40 -2.05 16 25 C -0.12 -1.91 9.12 -39.58 -0.36 -2.27 16 26 S 0.10 1.23 23.18 -107.50 -2.49 -1.26 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.09 1.57 7.35 -51.93 -0.38 1.19 16 33 H 0.09 1.39 7.34 -51.93 -0.38 1.01 16 34 H 0.03 0.49 8.00 -51.93 -0.42 0.07 16 35 H 0.33 5.84 6.34 -39.29 -0.25 5.59 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.12 1.74 8.04 -52.49 -0.42 1.31 16 40 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 41 H 0.11 1.20 8.06 -52.49 -0.42 0.78 16 42 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 43 H 0.12 1.87 6.51 -52.49 -0.34 1.53 16 LS Contribution 372.90 15.07 5.62 5.62 Total: -1.00 -31.29 372.90 -11.54 -42.83 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -6.36 Total: 5.13 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: -3.29 Total: -23.01 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: 0.00 Total: -46.07 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -2.49 Total: -1.26 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.29 -11.54 -42.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130466312.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.745 kcal (2) G-P(sol) polarization free energy of solvation -31.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds