Wall clock time and date at job start Tue Mar 31 2020 11:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29027 * 124.91624 * 2 1 4 4 C 1.31784 * 117.12700 * 180.02562 * 3 2 1 5 5 C 1.50700 * 122.75233 * 180.02562 * 4 3 2 6 6 C 1.33645 * 114.49482 * 359.97438 * 4 3 2 7 7 C 1.50704 * 126.03273 * 180.02562 * 6 4 3 8 8 N 1.46904 * 109.46978 * 90.00141 * 7 6 4 9 9 C 1.46901 * 110.99885 * 179.97438 * 8 7 6 10 10 H 1.09003 * 109.46917 * 34.99555 * 9 8 7 11 11 C 1.53000 * 109.47114 * 155.00130 * 9 8 7 12 12 C 1.50700 * 109.46751 * 294.99690 * 11 9 8 13 13 H 1.08001 * 120.00624 * 0.02562 * 12 11 9 14 14 C 1.37882 * 119.99683 * 180.02562 * 12 11 9 15 15 N 1.31519 * 119.99939 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 119.99951 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47213 * 60.00024 * 16 14 12 18 18 H 1.48500 * 109.46990 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47122 * 299.99903 * 16 14 12 20 20 C 1.50703 * 109.47187 * 275.00428 * 9 8 7 21 21 C 1.38235 * 120.00292 * 139.99945 * 20 9 8 22 22 C 1.38230 * 119.99899 * 179.97438 * 21 20 9 23 23 C 1.38235 * 120.00326 * 359.95697 * 22 21 20 24 24 C 1.38234 * 119.99814 * 359.97438 * 23 22 21 25 25 C 1.38234 * 119.99503 * 319.97237 * 20 9 8 26 26 S 1.70979 * 124.91857 * 180.32086 * 2 1 3 27 27 H 1.08998 * 109.47662 * 90.02331 * 1 2 3 28 28 H 1.09001 * 109.46970 * 210.02874 * 1 2 3 29 29 H 1.09002 * 109.46695 * 330.01780 * 1 2 3 30 30 H 1.08999 * 109.46733 * 269.99539 * 5 4 3 31 31 H 1.09000 * 109.46949 * 29.99681 * 5 4 3 32 32 H 1.08997 * 109.47255 * 150.00025 * 5 4 3 33 33 H 1.09003 * 109.47289 * 329.99958 * 7 6 4 34 34 H 1.08998 * 109.47108 * 210.00253 * 7 6 4 35 35 H 1.00896 * 111.00043 * 56.04436 * 8 7 6 36 36 H 1.08995 * 109.46916 * 54.99821 * 11 9 8 37 37 H 1.09003 * 109.46852 * 175.00189 * 11 9 8 38 38 H 0.97001 * 119.99717 * 180.02562 * 15 14 12 39 39 H 1.08001 * 119.99730 * 359.97438 * 21 20 9 40 40 H 1.08000 * 120.00376 * 179.97438 * 22 21 20 41 41 H 1.08000 * 120.00616 * 179.72578 * 23 22 21 42 42 H 1.08001 * 120.00299 * 179.97438 * 24 23 22 43 43 H 1.07997 * 120.00455 * 0.02562 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 -0.0005 5 6 4.5307 2.0246 0.0000 6 6 3.9354 -0.4006 -0.0004 7 6 5.3575 -0.8994 -0.0004 8 7 5.8195 -1.0614 1.3846 9 6 7.2050 -1.5480 1.4239 10 1 7.7642 -1.1198 0.5919 11 6 7.8552 -1.1300 2.7443 12 6 7.9586 0.3724 2.7997 13 1 7.5964 0.9695 1.9758 14 6 8.5156 0.9849 3.9023 15 7 8.9571 0.2578 4.9054 16 14 8.6431 2.8472 3.9714 17 1 7.2847 3.4402 3.8796 18 1 9.2743 3.2529 5.2529 19 1 9.4712 3.3290 2.8368 20 6 7.2129 -3.0510 1.3136 21 6 8.1738 -3.6828 0.5465 22 6 8.1813 -5.0614 0.4458 23 6 7.2285 -5.8083 1.1131 24 6 6.2686 -5.1767 1.8814 25 6 6.2596 -3.7978 1.9802 26 16 2.4857 -1.4019 -0.0079 27 1 -0.3634 -0.0004 -1.0276 28 1 -0.3633 -0.8897 0.5143 29 1 -0.3633 0.8902 0.5136 30 1 4.7666 2.3013 -1.0276 31 1 4.0907 2.8789 0.5145 32 1 5.4434 1.7219 0.5133 33 1 5.9949 -0.1799 -0.5143 34 1 5.4058 -1.8595 -0.5142 35 1 5.2066 -1.6744 1.9009 36 1 7.2467 -1.4833 3.5767 37 1 8.8521 -1.5655 2.8122 38 1 9.3486 0.6887 5.6812 39 1 8.9186 -3.0992 0.0257 40 1 8.9317 -5.5550 -0.1539 41 1 7.2317 -6.8852 1.0309 42 1 5.5239 -5.7602 2.4024 43 1 5.5090 -3.3043 2.5796 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130466312.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:49 Heat of formation + Delta-G solvation = 41.185951 kcal Electronic energy + Delta-G solvation = -23616.474209 eV Core-core repulsion = 20365.978884 eV Total energy + Delta-G solvation = -3250.495325 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.97190 -40.43454 -37.62815 -35.17422 -34.18290 -32.39756 -31.74329 -30.57035 -30.10113 -28.93099 -26.36128 -24.70810 -23.73167 -23.55393 -23.17348 -21.19459 -19.87266 -18.88011 -18.53532 -17.72502 -16.67649 -16.56748 -16.30217 -15.96137 -15.84649 -15.19758 -15.00205 -14.90089 -14.42116 -14.28360 -14.19067 -14.09965 -13.93140 -13.63137 -13.52980 -13.29376 -13.16972 -12.86109 -12.78182 -12.69668 -12.47145 -12.27663 -12.18102 -11.98070 -11.75007 -11.49510 -11.12690 -10.61161 -10.47874 -10.26413 -9.79471 -9.58280 -9.46931 -9.18353 -8.08088 -6.12961 -0.27030 0.38827 0.49936 0.52862 0.76295 1.42634 1.45612 1.52154 1.78507 2.48166 2.92229 3.17659 3.24676 3.44530 3.84483 3.94789 4.01570 4.09935 4.11653 4.19815 4.31093 4.46288 4.55995 4.57914 4.66863 4.67151 4.70001 4.73650 4.76499 4.87660 4.98264 5.06132 5.11853 5.15372 5.18203 5.41048 5.49205 5.58659 5.61767 5.63295 5.69242 5.90210 6.16008 6.25177 6.39130 6.53582 6.80123 7.00119 7.52531 9.03810 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.007823 B = 0.005673 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3578.420712 B = 4934.829380 C = 7853.420555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.042 3.958 3 N -0.503 5.503 4 C 0.068 3.932 5 C -0.078 4.078 6 C -0.232 4.232 7 C 0.147 3.853 8 N -0.665 5.665 9 C 0.146 3.854 10 H 0.074 0.926 11 C 0.054 3.946 12 C -0.495 4.495 13 H 0.062 0.938 14 C -0.003 4.003 15 N -0.941 5.941 16 Si 0.953 3.047 17 H -0.273 1.273 18 H -0.290 1.290 19 H -0.266 1.266 20 C -0.115 4.115 21 C -0.131 4.131 22 C -0.120 4.120 23 C -0.130 4.130 24 C -0.120 4.120 25 C -0.135 4.135 26 S 0.136 5.864 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.042 0.958 35 H 0.334 0.666 36 H -0.013 1.013 37 H -0.010 1.010 38 H 0.257 0.743 39 H 0.123 0.877 40 H 0.145 0.855 41 H 0.149 0.851 42 H 0.142 0.858 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.281 -8.998 -13.263 20.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.236 4.236 3 N -0.219 5.219 4 C -0.064 4.064 5 C -0.138 4.138 6 C -0.352 4.352 7 C 0.016 3.984 8 N -0.296 5.296 9 C 0.037 3.963 10 H 0.092 0.908 11 C 0.016 3.984 12 C -0.533 4.533 13 H 0.081 0.919 14 C -0.199 4.199 15 N -0.583 5.583 16 Si 0.779 3.221 17 H -0.199 1.199 18 H -0.216 1.216 19 H -0.191 1.191 20 C -0.117 4.117 21 C -0.150 4.150 22 C -0.138 4.138 23 C -0.148 4.148 24 C -0.138 4.138 25 C -0.153 4.153 26 S 0.392 5.608 27 H 0.122 0.878 28 H 0.119 0.881 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.060 0.940 35 H 0.154 0.846 36 H 0.006 0.994 37 H 0.008 0.992 38 H 0.066 0.934 39 H 0.141 0.859 40 H 0.163 0.837 41 H 0.167 0.833 42 H 0.160 0.840 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -13.523 -8.868 -13.047 20.778 hybrid contribution 0.902 0.944 0.480 1.392 sum -12.621 -7.924 -12.566 19.493 Atomic orbital electron populations 1.20625 0.82505 1.05233 1.05201 1.27635 1.03188 0.90754 1.02033 1.66194 1.04782 1.32915 1.18013 1.20341 0.90263 0.94817 1.00969 1.20374 0.96145 0.94125 1.03121 1.25628 0.99989 0.95963 1.13666 1.20170 0.88174 0.99332 0.90678 1.60607 1.02386 1.54795 1.11828 1.20497 0.89168 0.87351 0.99316 0.90829 1.18852 0.93000 0.95377 0.91150 1.21413 1.36507 0.92721 1.02685 0.91938 1.25819 0.95986 1.02386 0.95731 1.70101 1.43230 1.36872 1.08064 0.85683 0.78358 0.80917 0.77152 1.19851 1.21611 1.19142 1.20948 0.96220 0.97331 0.97175 1.21255 0.98358 0.95773 0.99593 1.21442 0.99326 0.93249 0.99771 1.21464 0.94994 1.01070 0.97268 1.21385 0.99634 0.93712 0.99088 1.21038 0.99371 0.95065 0.99857 1.83615 0.96697 1.11740 1.68775 0.87830 0.88077 0.89212 0.89522 0.91328 0.90750 0.89304 0.93999 0.84592 0.99422 0.99201 0.93387 0.85913 0.83709 0.83306 0.84037 0.87043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.13 10.46 71.24 0.75 -0.38 16 2 C 0.04 1.02 7.39 88.52 0.65 1.68 16 3 N -0.50 -15.46 10.53 -179.40 -1.89 -17.35 16 4 C 0.07 2.17 6.74 41.52 0.28 2.45 16 5 C -0.08 -2.39 9.82 71.24 0.70 -1.69 16 6 C -0.23 -6.96 6.10 24.64 0.15 -6.81 16 7 C 0.15 4.57 5.41 85.56 0.46 5.03 16 8 N -0.66 -24.65 5.94 -499.44 -2.97 -27.61 16 9 C 0.15 5.86 2.17 44.17 0.10 5.95 16 10 H 0.07 2.93 7.66 -2.39 -0.02 2.91 16 11 C 0.05 2.80 4.63 29.85 0.14 2.94 16 12 C -0.49 -27.76 8.84 25.60 0.23 -27.54 16 13 H 0.06 3.40 7.74 -2.91 -0.02 3.37 16 14 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 15 N -0.94 -58.23 13.29 21.45 0.28 -57.95 16 16 Si 0.95 45.58 29.54 68.60 2.03 47.60 16 17 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 18 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 20 C -0.11 -3.99 4.71 -19.87 -0.09 -4.09 16 21 C -0.13 -4.03 9.67 22.27 0.22 -3.81 16 22 C -0.12 -2.99 10.05 22.27 0.22 -2.77 16 23 C -0.13 -3.01 10.05 22.27 0.22 -2.79 16 24 C -0.12 -3.11 10.05 22.27 0.22 -2.89 16 25 C -0.13 -4.30 9.12 22.27 0.20 -4.10 16 26 S 0.14 3.26 23.18 -56.49 -1.31 1.95 16 27 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.07 2.54 7.35 -2.39 -0.02 2.53 16 33 H 0.09 2.75 7.34 -2.39 -0.02 2.74 16 34 H 0.04 1.22 8.00 -2.39 -0.02 1.20 16 35 H 0.33 12.12 6.34 -89.70 -0.57 11.55 16 36 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 37 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 38 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 39 H 0.12 3.57 8.04 -2.91 -0.02 3.54 16 40 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 41 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 42 H 0.14 2.86 8.06 -2.91 -0.02 2.84 16 43 H 0.11 3.61 6.51 -2.91 -0.02 3.60 16 Total: -1.00 -69.73 372.90 1.50 -68.24 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: 0.44 Total: 23.67 kcal Atomic # 6 Polarization: -43.46 SS G_CDS: 4.91 Total: -38.55 kcal Atomic # 7 Polarization: -98.35 SS G_CDS: -4.57 Total: -102.92 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Atomic # 16 Polarization: 3.26 SS G_CDS: -1.31 Total: 1.95 kcal Total: -69.73 1.50 -68.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130466312.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.425 kcal (2) G-P(sol) polarization free energy of solvation -69.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds