Wall clock time and date at job start Tue Mar 31 2020 10:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31306 * 122.07249 * 2 1 4 4 C 1.30227 * 117.03784 * 180.28228 * 3 2 1 5 5 C 1.47875 * 125.47015 * 179.76903 * 4 3 2 6 6 C 1.39548 * 120.13907 * 179.69905 * 5 4 3 7 7 C 1.37974 * 119.84874 * 179.79696 * 6 5 4 8 8 C 1.38344 * 120.14506 * 0.46251 * 7 6 5 9 9 C 1.50700 * 119.85675 * 179.77132 * 8 7 6 10 10 C 1.38353 * 120.28985 * 359.78889 * 8 7 6 11 11 C 1.37973 * 120.14209 * 359.97438 * 10 8 7 12 12 S 1.76171 * 109.05736 * 359.75275 * 4 3 2 13 13 C 1.33725 * 122.07882 * 179.81058 * 2 1 3 14 14 C 1.50699 * 125.88922 * 0.02562 * 13 2 1 15 15 H 1.09000 * 109.47179 * 344.71546 * 14 13 2 16 16 C 1.53002 * 109.46748 * 104.71409 * 14 13 2 17 17 N 1.46495 * 109.46901 * 224.71285 * 14 13 2 18 18 C 1.46507 * 120.00308 * 300.00106 * 17 14 13 19 19 C 1.36942 * 119.99982 * 120.00583 * 17 14 13 20 20 H 1.07995 * 119.99928 * 22.05263 * 19 17 14 21 21 C 1.38814 * 119.99956 * 202.05990 * 19 17 14 22 22 N 1.31618 * 120.00030 * 13.07781 * 21 19 17 23 23 Si 1.86799 * 119.99900 * 193.07870 * 21 19 17 24 24 H 1.48500 * 109.47342 * 59.99511 * 23 21 19 25 25 H 1.48503 * 109.47194 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47155 * 299.99895 * 23 21 19 27 27 H 1.08996 * 109.47480 * 270.18313 * 1 2 3 28 28 H 1.08995 * 109.47338 * 30.18685 * 1 2 3 29 29 H 1.09000 * 109.46856 * 150.18417 * 1 2 3 30 30 H 1.07990 * 120.07467 * 0.02562 * 6 5 4 31 31 H 1.08003 * 119.92368 * 180.21346 * 7 6 5 32 32 H 1.09002 * 109.47283 * 270.02466 * 9 8 7 33 33 H 1.09001 * 109.47130 * 30.02091 * 9 8 7 34 34 H 1.08997 * 109.47702 * 150.02368 * 9 8 7 35 35 H 1.07997 * 119.92755 * 179.97438 * 10 8 7 36 36 H 1.07987 * 120.07067 * 179.97438 * 11 10 8 37 37 H 1.08992 * 109.47503 * 299.99879 * 16 14 13 38 38 H 1.09000 * 109.47168 * 60.00131 * 16 14 13 39 39 H 1.09002 * 109.46655 * 179.97438 * 16 14 13 40 40 H 1.08998 * 109.46796 * 95.20719 * 18 17 14 41 41 H 1.08997 * 109.46991 * 335.20838 * 18 17 14 42 42 H 1.08996 * 109.46917 * 215.20961 * 18 17 14 43 43 H 0.97003 * 120.00250 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2042 1.1127 0.0000 4 6 3.5014 0.9984 -0.0057 5 6 4.4619 2.1228 -0.0116 6 6 5.8346 1.8717 -0.0112 7 6 6.7254 2.9253 -0.0209 8 6 6.2604 4.2282 -0.0216 9 6 7.2392 5.3741 -0.0271 10 6 4.9007 4.4839 -0.0168 11 6 3.9993 3.4394 -0.0119 12 16 3.9283 -0.7108 -0.0048 13 6 2.2172 -1.1331 0.0037 14 6 1.6519 -2.5300 0.0078 15 1 0.5966 -2.4941 0.2782 16 6 1.8008 -3.1444 -1.3855 17 7 2.3782 -3.3478 0.9823 18 6 3.8219 -3.5507 0.8374 19 6 1.7077 -3.9229 2.0288 20 1 0.6423 -4.0866 1.9628 21 6 2.3974 -4.2951 3.1745 22 7 3.6285 -3.8716 3.3683 23 14 1.5785 -5.3969 4.4412 24 1 1.2095 -6.6889 3.8089 25 1 2.5193 -5.6461 5.5628 26 1 0.3556 -4.7322 4.9588 27 1 -0.3634 0.0033 1.0276 28 1 -0.3634 0.8882 -0.5167 29 1 -0.3633 -0.8916 -0.5110 30 1 6.1988 0.8551 -0.0069 31 1 7.7880 2.7323 -0.0241 32 1 7.4792 5.6519 0.9993 33 1 8.1499 5.0716 -0.5440 34 1 6.7966 6.2277 -0.5404 35 1 4.5442 5.5033 -0.0169 36 1 2.9383 3.6402 -0.0077 37 1 1.2604 -2.5360 -2.1106 38 1 2.8561 -3.1803 -1.6559 39 1 1.3923 -4.1550 -1.3824 40 1 4.3543 -2.8210 1.4474 41 1 4.1033 -3.4247 -0.2080 42 1 4.0820 -4.5571 1.1650 43 1 4.1107 -4.1320 4.1687 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134201098.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:34 Heat of formation + Delta-G solvation = 65.355767 kcal Electronic energy + Delta-G solvation = -23588.887800 eV Core-core repulsion = 20339.440558 eV Total energy + Delta-G solvation = -3249.447243 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.89471 -40.00528 -38.12210 -34.92751 -33.97546 -32.20836 -31.92248 -30.76874 -28.64079 -28.13173 -27.86282 -25.32516 -24.62950 -23.76584 -22.11837 -21.85562 -19.51392 -19.06119 -18.48911 -17.42603 -16.94669 -16.22328 -16.03391 -15.96456 -15.59646 -15.43880 -14.93551 -14.60843 -14.44727 -14.36041 -14.25904 -14.02761 -13.62623 -13.59666 -13.32351 -13.08966 -12.95538 -12.76298 -12.72344 -12.63472 -12.49891 -12.37845 -12.25740 -12.05552 -11.94802 -11.80368 -11.70825 -10.72931 -10.54306 -10.29349 -9.97094 -9.92860 -8.93760 -8.82390 -7.86172 -5.34821 -0.63875 0.42924 0.44888 0.60578 0.92981 1.45653 1.47633 1.54000 1.91677 2.48001 2.84754 3.04172 3.28306 3.59043 3.87256 3.94653 3.98168 4.05702 4.11216 4.32457 4.44880 4.46028 4.47414 4.54674 4.66866 4.76453 4.78028 4.84838 4.87428 4.91130 4.93962 5.02158 5.11093 5.12938 5.19604 5.26543 5.33802 5.39758 5.47294 5.55282 5.60564 5.63487 5.67047 6.00175 6.26887 6.80480 7.08659 7.77927 8.22765 9.15974 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.017176 B = 0.003618 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.809409 B = 7738.205882 C = 8385.969351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.028 3.972 3 N -0.476 5.476 4 C 0.066 3.934 5 C -0.047 4.047 6 C -0.108 4.108 7 C -0.120 4.120 8 C -0.075 4.075 9 C -0.113 4.113 10 C -0.122 4.122 11 C -0.085 4.085 12 S 0.104 5.896 13 C -0.205 4.205 14 C 0.233 3.767 15 H 0.088 0.912 16 C -0.147 4.147 17 N -0.601 5.601 18 C 0.171 3.829 19 C -0.267 4.267 20 H 0.078 0.922 21 C -0.049 4.049 22 N -0.933 5.933 23 Si 0.970 3.030 24 H -0.276 1.276 25 H -0.296 1.296 26 H -0.276 1.276 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.120 0.880 31 H 0.152 0.848 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.153 0.847 36 H 0.127 0.873 37 H 0.074 0.926 38 H 0.045 0.955 39 H 0.064 0.936 40 H 0.018 0.982 41 H 0.025 0.975 42 H 0.022 0.978 43 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.817 15.288 -10.137 18.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.105 4.105 3 N -0.190 5.190 4 C -0.208 4.208 5 C -0.051 4.051 6 C -0.129 4.129 7 C -0.138 4.138 8 C -0.076 4.076 9 C -0.169 4.169 10 C -0.140 4.140 11 C -0.107 4.107 12 S 0.362 5.638 13 C -0.329 4.329 14 C 0.124 3.876 15 H 0.106 0.894 16 C -0.206 4.206 17 N -0.322 5.322 18 C 0.026 3.974 19 C -0.397 4.397 20 H 0.095 0.905 21 C -0.245 4.245 22 N -0.579 5.579 23 Si 0.798 3.202 24 H -0.201 1.201 25 H -0.223 1.223 26 H -0.202 1.202 27 H 0.086 0.914 28 H 0.102 0.898 29 H 0.106 0.894 30 H 0.138 0.862 31 H 0.170 0.830 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.171 0.829 36 H 0.145 0.855 37 H 0.093 0.907 38 H 0.064 0.936 39 H 0.083 0.917 40 H 0.036 0.964 41 H 0.044 0.956 42 H 0.041 0.959 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.627 15.098 -10.001 18.692 hybrid contribution -1.117 -0.998 1.206 1.923 sum 3.510 14.100 -8.795 16.985 Atomic orbital electron populations 1.20366 0.85616 1.03962 1.02841 1.20373 0.99450 0.85817 1.04871 1.66340 1.04752 1.31360 1.16584 1.26241 0.92897 0.96307 1.05322 1.18031 0.91216 0.90616 1.05202 1.21304 0.91507 1.00339 0.99736 1.21223 1.00480 0.91495 1.00564 1.20477 0.94916 0.95609 0.96612 1.20887 0.97521 0.95057 1.03443 1.21304 0.92489 0.99571 1.00627 1.21326 1.00797 0.90889 0.97663 1.84958 1.08369 1.01589 1.68842 1.27072 0.94687 1.02434 1.08664 1.19206 0.95529 0.82071 0.90817 0.89373 1.22168 1.01564 1.01207 0.95660 1.44308 1.04999 1.54958 1.27931 1.20587 0.83651 0.98643 0.94561 1.19581 0.93642 1.32870 0.93650 0.90467 1.25810 0.97516 1.02126 0.98998 1.70235 1.12640 1.47288 1.27750 0.85302 0.77400 0.79187 0.78296 1.20145 1.22267 1.20225 0.91419 0.89820 0.89434 0.86169 0.83003 0.90011 0.90167 0.90041 0.82918 0.85548 0.90689 0.93627 0.91736 0.96385 0.95644 0.95896 0.94253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.06 9.76 71.24 0.70 -1.37 16 2 C 0.03 1.05 6.69 41.61 0.28 1.33 16 3 N -0.48 -18.45 10.12 -177.79 -1.80 -20.25 16 4 C 0.07 2.48 7.35 87.48 0.64 3.13 16 5 C -0.05 -1.50 5.87 -20.09 -0.12 -1.61 16 6 C -0.11 -3.00 9.61 22.52 0.22 -2.78 16 7 C -0.12 -2.53 9.68 22.23 0.22 -2.31 16 8 C -0.07 -1.39 5.89 -19.81 -0.12 -1.51 16 9 C -0.11 -1.23 10.00 71.24 0.71 -0.52 16 10 C -0.12 -2.50 9.68 22.23 0.22 -2.29 16 11 C -0.09 -2.33 9.68 22.52 0.22 -2.11 16 12 S 0.10 4.08 19.01 -56.49 -1.07 3.01 16 13 C -0.20 -8.31 5.46 24.66 0.13 -8.17 16 14 C 0.23 9.51 2.85 44.25 0.13 9.64 16 15 H 0.09 3.49 6.43 -2.39 -0.02 3.48 16 16 C -0.15 -4.94 9.16 71.98 0.66 -4.28 16 17 N -0.60 -29.89 2.80 -706.98 -1.98 -31.88 16 18 C 0.17 8.52 6.96 127.77 0.89 9.41 16 19 C -0.27 -14.51 9.60 84.03 0.81 -13.70 16 20 H 0.08 4.00 7.81 -2.91 -0.02 3.97 16 21 C -0.05 -2.72 5.10 84.86 0.43 -2.29 16 22 N -0.93 -55.28 10.66 21.65 0.23 -55.05 16 23 Si 0.97 44.97 29.57 68.60 2.03 47.00 16 24 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 25 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 26 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 27 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.09 2.31 6.96 -2.39 -0.02 2.29 16 30 H 0.12 3.34 7.30 -2.92 -0.02 3.32 16 31 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 32 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.08 0.70 8.08 -2.39 -0.02 0.69 16 34 H 0.08 0.69 8.08 -2.39 -0.02 0.67 16 35 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 36 H 0.13 3.52 7.82 -2.92 -0.02 3.50 16 37 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.04 1.57 6.66 -2.39 -0.02 1.55 16 39 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.02 0.99 6.34 -2.39 -0.02 0.97 16 41 H 0.03 1.11 5.92 -2.39 -0.01 1.10 16 42 H 0.02 1.22 7.28 -2.39 -0.02 1.21 16 43 H 0.25 14.39 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -67.56 360.67 4.42 -63.14 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 1.01 Total: 13.47 kcal Atomic # 6 Polarization: -25.45 SS G_CDS: 6.01 Total: -19.45 kcal Atomic # 7 Polarization: -103.62 SS G_CDS: -3.55 Total: -107.17 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Atomic # 16 Polarization: 4.08 SS G_CDS: -1.07 Total: 3.01 kcal Total: -67.56 4.42 -63.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134201098.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.492 kcal (2) G-P(sol) polarization free energy of solvation -67.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds