Wall clock time and date at job start Tue Mar 31 2020 10:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31303 * 122.07632 * 2 1 4 4 C 1.30221 * 117.03951 * 179.97438 * 3 2 1 5 5 C 1.47873 * 125.46901 * 179.97438 * 4 3 2 6 6 C 1.39553 * 120.13945 * 179.74689 * 5 4 3 7 7 C 1.37975 * 119.85264 * 179.74792 * 6 5 4 8 8 C 1.38355 * 120.13948 * 0.55490 * 7 6 5 9 9 C 1.50701 * 119.85097 * 179.72159 * 8 7 6 10 10 C 1.38352 * 120.28736 * 359.69557 * 8 7 6 11 11 C 1.37957 * 120.14515 * 0.02788 * 10 8 7 12 12 S 1.76171 * 109.05748 * 359.97438 * 4 3 2 13 13 C 1.33725 * 122.07567 * 179.71190 * 2 1 3 14 14 C 1.50700 * 125.89027 * 0.02688 * 13 2 1 15 15 H 1.08998 * 109.47668 * 12.58707 * 14 13 2 16 16 C 1.53001 * 109.46936 * 252.58938 * 14 13 2 17 17 N 1.46501 * 109.47471 * 132.58642 * 14 13 2 18 18 C 1.46496 * 120.00204 * 245.22456 * 17 14 13 19 19 C 1.36940 * 119.99490 * 65.22407 * 17 14 13 20 20 H 1.07993 * 120.00314 * 24.99586 * 19 17 14 21 21 C 1.38820 * 119.99662 * 204.99139 * 19 17 14 22 22 N 1.31615 * 120.00024 * 9.69178 * 21 19 17 23 23 Si 1.86803 * 119.99883 * 189.69608 * 21 19 17 24 24 H 1.48493 * 109.47415 * 59.99517 * 23 21 19 25 25 H 1.48493 * 109.47146 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46839 * 299.99815 * 23 21 19 27 27 H 1.08997 * 109.47292 * 90.02788 * 1 2 3 28 28 H 1.09000 * 109.46869 * 210.02607 * 1 2 3 29 29 H 1.09000 * 109.47039 * 330.01981 * 1 2 3 30 30 H 1.07999 * 120.06929 * 359.97438 * 6 5 4 31 31 H 1.07994 * 119.92694 * 180.27697 * 7 6 5 32 32 H 1.08991 * 109.47058 * 269.97697 * 9 8 7 33 33 H 1.09004 * 109.47265 * 29.98203 * 9 8 7 34 34 H 1.09001 * 109.46440 * 149.97559 * 9 8 7 35 35 H 1.07996 * 119.92135 * 179.97438 * 10 8 7 36 36 H 1.08001 * 120.07442 * 179.97438 * 11 10 8 37 37 H 1.08992 * 109.47421 * 59.99952 * 16 14 13 38 38 H 1.09004 * 109.47485 * 180.02562 * 16 14 13 39 39 H 1.09007 * 109.46968 * 299.99790 * 16 14 13 40 40 H 1.09003 * 109.46840 * 85.74205 * 18 17 14 41 41 H 1.08997 * 109.46868 * 205.74109 * 18 17 14 42 42 H 1.09001 * 109.46983 * 325.74783 * 18 17 14 43 43 H 0.96996 * 120.00209 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2043 1.1126 0.0000 4 6 3.5015 0.9983 0.0005 5 6 4.4620 2.1226 0.0001 6 6 5.8347 1.8715 0.0060 7 6 6.7256 2.9250 0.0003 8 6 6.2606 4.2281 0.0003 9 6 7.2395 5.3739 0.0004 10 6 4.9009 4.4837 -0.0004 11 6 3.9996 3.4393 -0.0004 12 16 3.9283 -0.7110 0.0018 13 6 2.2172 -1.1331 0.0057 14 6 1.6518 -2.5300 0.0121 15 1 0.5859 -2.4917 -0.2124 16 6 1.8600 -3.1581 1.3917 17 7 2.3354 -3.3383 -1.0006 18 6 1.5920 -3.8469 -2.1560 19 6 3.6692 -3.6182 -0.8673 20 1 4.1261 -3.6166 0.1112 21 6 4.4340 -3.9041 -1.9900 22 7 3.9313 -3.7215 -3.1926 23 14 6.1765 -4.5479 -1.7938 24 1 6.1495 -5.8285 -1.0426 25 1 6.7747 -4.7734 -3.1341 26 1 6.9905 -3.5541 -1.0488 27 1 -0.3634 -0.0005 -1.0276 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3633 0.8902 0.5135 30 1 6.1988 0.8547 0.0114 31 1 7.7882 2.7320 0.0004 32 1 7.4751 5.6503 1.0280 33 1 8.1524 5.0719 -0.5131 34 1 6.7990 6.2280 -0.5139 35 1 4.5444 5.5031 0.0000 36 1 2.9384 3.6401 -0.0005 37 1 1.3515 -2.5568 2.1452 38 1 1.4515 -4.1687 1.3963 39 1 2.9260 -3.1965 1.6163 40 1 1.5751 -3.0892 -2.9393 41 1 2.0771 -4.7476 -2.5321 42 1 0.5709 -4.0823 -1.8560 43 1 4.4655 -3.9216 -3.9771 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134201205.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:38 Heat of formation + Delta-G solvation = 78.724083 kcal Electronic energy + Delta-G solvation = -23789.510032 eV Core-core repulsion = 20540.642483 eV Total energy + Delta-G solvation = -3248.867549 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.42393 -38.66914 -36.35643 -33.48694 -32.40686 -30.88997 -30.62296 -29.33435 -27.49872 -26.38294 -25.98726 -23.60342 -23.12698 -22.56129 -20.80993 -20.44671 -18.18054 -17.26705 -16.53300 -15.86211 -15.23236 -15.11395 -14.75340 -14.33263 -14.08579 -13.81041 -13.65590 -13.35038 -13.32140 -12.80133 -12.74063 -12.43015 -12.38292 -12.26355 -12.01538 -11.65701 -11.56440 -11.31519 -11.26932 -11.19672 -10.92303 -10.91348 -10.74401 -10.43755 -10.35104 -10.00274 -9.87446 -9.03012 -8.95563 -8.83617 -8.63064 -8.24061 -7.36504 -6.93724 -5.99874 -3.37685 0.82082 1.53843 1.97086 2.21163 2.72945 3.27242 3.32194 3.32673 3.46084 4.07775 4.31074 4.52620 4.88675 4.92786 5.12857 5.23424 5.27780 5.32472 5.45459 5.50339 5.58110 5.64888 5.74853 5.80215 5.80413 5.96649 6.04807 6.09656 6.13127 6.14614 6.22762 6.36345 6.48155 6.54097 6.60159 6.65510 6.67693 6.73566 6.88026 7.01549 7.09286 7.24045 7.54708 7.61399 8.18232 8.49300 8.99407 9.61455 10.12898 11.04019 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.013068 B = 0.004712 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.175771 B = 5941.394305 C = 7477.059534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.018 3.982 3 N -0.461 5.461 4 C 0.017 3.983 5 C 0.000 4.000 6 C -0.103 4.103 7 C -0.117 4.117 8 C -0.092 4.092 9 C -0.112 4.112 10 C -0.123 4.123 11 C -0.083 4.083 12 S 0.168 5.832 13 C -0.180 4.180 14 C 0.234 3.766 15 H 0.074 0.926 16 C -0.152 4.152 17 N -0.587 5.587 18 C 0.161 3.839 19 C -0.245 4.245 20 H 0.073 0.927 21 C 0.016 3.984 22 N -0.885 5.885 23 Si 0.900 3.100 24 H -0.279 1.279 25 H -0.287 1.287 26 H -0.276 1.276 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.122 0.878 36 H 0.131 0.869 37 H 0.044 0.956 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.019 0.981 41 H 0.063 0.937 42 H -0.002 1.002 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.800 11.023 6.756 12.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.116 4.116 3 N -0.176 5.176 4 C -0.254 4.254 5 C -0.003 4.003 6 C -0.124 4.124 7 C -0.135 4.135 8 C -0.093 4.093 9 C -0.168 4.168 10 C -0.141 4.141 11 C -0.105 4.105 12 S 0.430 5.570 13 C -0.305 4.305 14 C 0.124 3.876 15 H 0.092 0.908 16 C -0.212 4.212 17 N -0.307 5.307 18 C 0.016 3.984 19 C -0.378 4.378 20 H 0.091 0.909 21 C -0.186 4.186 22 N -0.526 5.526 23 Si 0.729 3.271 24 H -0.205 1.205 25 H -0.212 1.212 26 H -0.202 1.202 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.143 0.857 31 H 0.141 0.859 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.140 0.860 36 H 0.149 0.851 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.037 0.963 41 H 0.082 0.918 42 H 0.016 0.984 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.589 10.877 6.536 12.789 hybrid contribution 0.092 -0.325 -0.321 0.466 sum 1.681 10.552 6.215 12.361 Atomic orbital electron populations 1.20217 0.88477 1.02062 1.01961 1.19733 0.97450 0.86453 1.07977 1.66199 1.04773 1.31405 1.15224 1.25971 0.92702 0.97816 1.08940 1.17896 0.90932 0.90762 1.00729 1.21205 0.91906 0.99549 0.99730 1.20854 0.99377 0.91753 1.01549 1.19953 0.94396 0.94733 1.00212 1.20771 0.97891 0.96095 1.02090 1.20933 0.92460 0.98827 1.01879 1.21235 1.00296 0.91048 0.97873 1.85311 1.07138 0.98433 1.66077 1.26916 0.95274 1.01664 1.06696 1.19045 0.94984 0.82929 0.90666 0.90807 1.22205 1.02102 1.00152 0.96726 1.44279 1.07391 1.54911 1.24132 1.20877 0.90528 0.98838 0.88149 1.19161 0.84819 1.41286 0.92580 0.90895 1.25162 0.98157 1.00003 0.95261 1.70050 1.36836 1.48607 0.97145 0.86389 0.84108 0.79374 0.77264 1.20528 1.21208 1.20190 0.91770 0.91363 0.91714 0.85739 0.85852 0.91348 0.91653 0.91701 0.86041 0.85125 0.93691 0.92455 0.92447 0.96284 0.91849 0.98355 0.93066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.07 9.78 36.01 0.35 -0.71 16 2 C 0.02 0.36 6.69 -84.40 -0.56 -0.20 16 3 N -0.46 -9.38 10.11 -7.55 -0.08 -9.46 16 4 C 0.02 0.35 7.35 -14.29 -0.11 0.24 16 5 C 0.00 0.00 5.87 -104.97 -0.62 -0.61 16 6 C -0.10 -1.62 9.61 -39.19 -0.38 -2.00 16 7 C -0.12 -1.54 9.68 -39.63 -0.38 -1.92 16 8 C -0.09 -1.11 5.89 -104.54 -0.62 -1.72 16 9 C -0.11 -0.97 10.01 36.01 0.36 -0.61 16 10 C -0.12 -1.56 9.68 -39.64 -0.38 -1.95 16 11 C -0.08 -1.28 9.68 -39.20 -0.38 -1.66 16 12 S 0.17 3.54 20.29 -107.50 -2.18 1.35 16 13 C -0.18 -3.75 5.44 -35.89 -0.20 -3.94 16 14 C 0.23 4.74 2.95 -69.08 -0.20 4.54 16 15 H 0.07 1.38 6.29 -51.93 -0.33 1.06 16 16 C -0.15 -2.73 9.06 37.16 0.34 -2.39 16 17 N -0.59 -13.90 2.85 -174.81 -0.50 -14.40 16 18 C 0.16 3.77 8.96 59.84 0.54 4.31 16 19 C -0.25 -6.18 7.04 -15.05 -0.11 -6.28 16 20 H 0.07 1.82 6.45 -52.49 -0.34 1.48 16 21 C 0.02 0.43 5.11 -17.43 -0.09 0.34 16 22 N -0.89 -24.27 10.70 55.49 0.59 -23.67 16 23 Si 0.90 20.60 29.57 -169.99 -5.03 15.57 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.07 0.96 6.89 -51.93 -0.36 0.60 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.12 1.95 7.30 -52.49 -0.38 1.56 16 31 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 34 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 35 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 36 H 0.13 1.99 7.82 -52.49 -0.41 1.58 16 37 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 1.10 6.77 -51.92 -0.35 0.74 16 40 H 0.02 0.48 7.83 -51.93 -0.41 0.08 16 41 H 0.06 1.59 6.74 -51.93 -0.35 1.24 16 42 H 0.00 -0.04 7.97 -51.93 -0.41 -0.46 16 43 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 362.98 15.07 5.47 5.47 Total: -1.00 -28.88 362.98 -10.42 -39.30 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -6.27 Total: 0.42 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: -2.43 Total: -14.58 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: 0.02 Total: -47.53 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.03 Total: 15.57 kcal Atomic # 16 Polarization: 3.54 SS G_CDS: -2.18 Total: 1.35 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.88 -10.42 -39.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134201205.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.028 kcal (2) G-P(sol) polarization free energy of solvation -28.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds