Wall clock time and date at job start Tue Mar 31 2020 10:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31303 * 122.07632 * 2 1 4 4 C 1.30221 * 117.03951 * 179.97438 * 3 2 1 5 5 C 1.47873 * 125.46901 * 179.97438 * 4 3 2 6 6 C 1.39553 * 120.13945 * 179.74689 * 5 4 3 7 7 C 1.37975 * 119.85264 * 179.74792 * 6 5 4 8 8 C 1.38355 * 120.13948 * 0.55490 * 7 6 5 9 9 C 1.50701 * 119.85097 * 179.72159 * 8 7 6 10 10 C 1.38352 * 120.28736 * 359.69557 * 8 7 6 11 11 C 1.37957 * 120.14515 * 0.02788 * 10 8 7 12 12 S 1.76171 * 109.05748 * 359.97438 * 4 3 2 13 13 C 1.33725 * 122.07567 * 179.71190 * 2 1 3 14 14 C 1.50700 * 125.89027 * 0.02688 * 13 2 1 15 15 H 1.08998 * 109.47668 * 12.58707 * 14 13 2 16 16 C 1.53001 * 109.46936 * 252.58938 * 14 13 2 17 17 N 1.46501 * 109.47471 * 132.58642 * 14 13 2 18 18 C 1.46496 * 120.00204 * 245.22456 * 17 14 13 19 19 C 1.36940 * 119.99490 * 65.22407 * 17 14 13 20 20 H 1.07993 * 120.00314 * 24.99586 * 19 17 14 21 21 C 1.38820 * 119.99662 * 204.99139 * 19 17 14 22 22 N 1.31615 * 120.00024 * 9.69178 * 21 19 17 23 23 Si 1.86803 * 119.99883 * 189.69608 * 21 19 17 24 24 H 1.48493 * 109.47415 * 59.99517 * 23 21 19 25 25 H 1.48493 * 109.47146 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46839 * 299.99815 * 23 21 19 27 27 H 1.08997 * 109.47292 * 90.02788 * 1 2 3 28 28 H 1.09000 * 109.46869 * 210.02607 * 1 2 3 29 29 H 1.09000 * 109.47039 * 330.01981 * 1 2 3 30 30 H 1.07999 * 120.06929 * 359.97438 * 6 5 4 31 31 H 1.07994 * 119.92694 * 180.27697 * 7 6 5 32 32 H 1.08991 * 109.47058 * 269.97697 * 9 8 7 33 33 H 1.09004 * 109.47265 * 29.98203 * 9 8 7 34 34 H 1.09001 * 109.46440 * 149.97559 * 9 8 7 35 35 H 1.07996 * 119.92135 * 179.97438 * 10 8 7 36 36 H 1.08001 * 120.07442 * 179.97438 * 11 10 8 37 37 H 1.08992 * 109.47421 * 59.99952 * 16 14 13 38 38 H 1.09004 * 109.47485 * 180.02562 * 16 14 13 39 39 H 1.09007 * 109.46968 * 299.99790 * 16 14 13 40 40 H 1.09003 * 109.46840 * 85.74205 * 18 17 14 41 41 H 1.08997 * 109.46868 * 205.74109 * 18 17 14 42 42 H 1.09001 * 109.46983 * 325.74783 * 18 17 14 43 43 H 0.96996 * 120.00209 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2043 1.1126 0.0000 4 6 3.5015 0.9983 0.0005 5 6 4.4620 2.1226 0.0001 6 6 5.8347 1.8715 0.0060 7 6 6.7256 2.9250 0.0003 8 6 6.2606 4.2281 0.0003 9 6 7.2395 5.3739 0.0004 10 6 4.9009 4.4837 -0.0004 11 6 3.9996 3.4393 -0.0004 12 16 3.9283 -0.7110 0.0018 13 6 2.2172 -1.1331 0.0057 14 6 1.6518 -2.5300 0.0121 15 1 0.5859 -2.4917 -0.2124 16 6 1.8600 -3.1581 1.3917 17 7 2.3354 -3.3383 -1.0006 18 6 1.5920 -3.8469 -2.1560 19 6 3.6692 -3.6182 -0.8673 20 1 4.1261 -3.6166 0.1112 21 6 4.4340 -3.9041 -1.9900 22 7 3.9313 -3.7215 -3.1926 23 14 6.1765 -4.5479 -1.7938 24 1 6.1495 -5.8285 -1.0426 25 1 6.7747 -4.7734 -3.1341 26 1 6.9905 -3.5541 -1.0488 27 1 -0.3634 -0.0005 -1.0276 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3633 0.8902 0.5135 30 1 6.1988 0.8547 0.0114 31 1 7.7882 2.7320 0.0004 32 1 7.4751 5.6503 1.0280 33 1 8.1524 5.0719 -0.5131 34 1 6.7990 6.2280 -0.5139 35 1 4.5444 5.5031 0.0000 36 1 2.9384 3.6401 -0.0005 37 1 1.3515 -2.5568 2.1452 38 1 1.4515 -4.1687 1.3963 39 1 2.9260 -3.1965 1.6163 40 1 1.5751 -3.0892 -2.9393 41 1 2.0771 -4.7476 -2.5321 42 1 0.5709 -4.0823 -1.8560 43 1 4.4655 -3.9216 -3.9771 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134201205.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:37 Heat of formation + Delta-G solvation = 64.869930 kcal Electronic energy + Delta-G solvation = -23790.110794 eV Core-core repulsion = 20540.642483 eV Total energy + Delta-G solvation = -3249.468310 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.80279 -39.96653 -38.06663 -34.86065 -33.92506 -32.19872 -31.92390 -30.92208 -28.57561 -27.96970 -27.73131 -25.15132 -24.57238 -23.73589 -22.23821 -21.89071 -19.72130 -18.82253 -18.22649 -17.30705 -16.97559 -16.21519 -15.97660 -15.88440 -15.47146 -15.38059 -15.07511 -14.60127 -14.45335 -14.33510 -14.14775 -13.93986 -13.59286 -13.38024 -13.20237 -13.04960 -13.00899 -12.94502 -12.69765 -12.62778 -12.51003 -12.34480 -12.17667 -12.06991 -11.96211 -11.74332 -11.55562 -10.79080 -10.39373 -10.23549 -9.95030 -9.85517 -8.81329 -8.79205 -7.91444 -5.34904 -0.55918 0.43004 0.58604 0.67016 1.13976 1.44087 1.44808 1.49911 1.99390 2.45807 2.86502 3.13096 3.30933 3.58304 3.89266 3.96920 4.05718 4.08314 4.15667 4.39021 4.45958 4.47618 4.49626 4.60852 4.78071 4.80973 4.84148 4.85722 4.89780 4.90981 4.97714 5.04151 5.12175 5.13625 5.26738 5.30350 5.36716 5.40880 5.50536 5.59135 5.62330 5.64534 5.68184 6.01163 6.28761 6.90617 7.09339 7.79018 8.25026 9.12481 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.013068 B = 0.004712 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.175771 B = 5941.394305 C = 7477.059534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.018 3.982 3 N -0.478 5.478 4 C 0.042 3.958 5 C -0.042 4.042 6 C -0.113 4.113 7 C -0.120 4.120 8 C -0.077 4.077 9 C -0.112 4.112 10 C -0.121 4.121 11 C -0.087 4.087 12 S 0.121 5.879 13 C -0.200 4.200 14 C 0.232 3.768 15 H 0.092 0.908 16 C -0.142 4.142 17 N -0.603 5.603 18 C 0.175 3.825 19 C -0.242 4.242 20 H 0.071 0.929 21 C -0.032 4.032 22 N -0.924 5.924 23 Si 0.946 3.054 24 H -0.274 1.274 25 H -0.293 1.293 26 H -0.273 1.273 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.115 0.885 31 H 0.150 0.850 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.154 0.846 36 H 0.127 0.873 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.038 0.962 40 H -0.011 1.011 41 H 0.038 0.962 42 H 0.031 0.969 43 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.019 13.859 8.307 16.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.115 4.115 3 N -0.193 5.193 4 C -0.231 4.231 5 C -0.046 4.046 6 C -0.134 4.134 7 C -0.138 4.138 8 C -0.078 4.078 9 C -0.168 4.168 10 C -0.139 4.139 11 C -0.108 4.108 12 S 0.383 5.617 13 C -0.324 4.324 14 C 0.123 3.877 15 H 0.110 0.890 16 C -0.201 4.201 17 N -0.325 5.325 18 C 0.030 3.970 19 C -0.374 4.374 20 H 0.088 0.912 21 C -0.229 4.229 22 N -0.569 5.569 23 Si 0.774 3.226 24 H -0.199 1.199 25 H -0.219 1.219 26 H -0.199 1.199 27 H 0.087 0.913 28 H 0.106 0.894 29 H 0.098 0.902 30 H 0.133 0.867 31 H 0.167 0.833 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.172 0.828 36 H 0.145 0.855 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.058 0.942 40 H 0.007 0.993 41 H 0.057 0.943 42 H 0.049 0.951 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.788 13.693 8.129 16.024 hybrid contribution 0.040 -0.813 -0.621 1.024 sum 1.828 12.880 7.508 15.020 Atomic orbital electron populations 1.20346 0.85550 1.03860 1.02782 1.20405 0.99405 0.85892 1.05826 1.66325 1.04825 1.31558 1.16599 1.26413 0.93111 0.97389 1.06156 1.18055 0.91183 0.90852 1.04497 1.21291 0.91800 1.00123 1.00184 1.21201 1.00320 0.91610 1.00689 1.20454 0.94979 0.95454 0.96953 1.20876 0.97385 0.94983 1.03545 1.21301 0.92436 0.99577 1.00554 1.21320 1.00762 0.90854 0.97908 1.85364 1.08771 1.00154 1.67442 1.26942 0.94685 1.02316 1.08448 1.19226 0.95452 0.82345 0.90720 0.88979 1.22078 1.01286 1.00871 0.95829 1.44390 1.07060 1.56545 1.24465 1.20618 0.91869 0.96796 0.87710 1.19217 0.85560 1.40465 0.92184 0.91169 1.25691 1.00816 1.01261 0.95168 1.70194 1.37624 1.51687 0.97402 0.85648 0.81193 0.79064 0.76673 1.19934 1.21949 1.19878 0.91300 0.89350 0.90169 0.86722 0.83277 0.89680 0.90472 0.90106 0.82813 0.85519 0.91201 0.91672 0.94236 0.99293 0.94273 0.95099 0.94088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.94 9.78 71.24 0.70 -1.25 16 2 C 0.02 0.71 6.69 41.61 0.28 0.99 16 3 N -0.48 -19.29 10.11 -177.80 -1.80 -21.09 16 4 C 0.04 1.70 7.35 87.48 0.64 2.34 16 5 C -0.04 -1.46 5.87 -20.09 -0.12 -1.58 16 6 C -0.11 -3.51 9.61 22.52 0.22 -3.29 16 7 C -0.12 -2.86 9.68 22.24 0.22 -2.65 16 8 C -0.08 -1.58 5.89 -19.81 -0.12 -1.70 16 9 C -0.11 -1.39 10.01 71.24 0.71 -0.68 16 10 C -0.12 -2.68 9.68 22.23 0.22 -2.47 16 11 C -0.09 -2.55 9.68 22.52 0.22 -2.33 16 12 S 0.12 5.24 20.29 -56.49 -1.15 4.10 16 13 C -0.20 -8.30 5.44 24.66 0.13 -8.17 16 14 C 0.23 9.24 2.95 44.25 0.13 9.37 16 15 H 0.09 3.28 6.29 -2.39 -0.02 3.27 16 16 C -0.14 -4.91 9.06 71.98 0.65 -4.26 16 17 N -0.60 -29.01 2.85 -706.99 -2.01 -31.02 16 18 C 0.17 8.41 8.96 127.77 1.14 9.55 16 19 C -0.24 -12.52 7.04 84.03 0.59 -11.92 16 20 H 0.07 3.60 6.45 -2.91 -0.02 3.58 16 21 C -0.03 -1.72 5.11 84.86 0.43 -1.29 16 22 N -0.92 -53.20 10.70 21.65 0.23 -52.97 16 23 Si 0.95 43.73 29.57 68.60 2.03 45.76 16 24 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 25 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 26 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 27 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.09 2.22 6.89 -2.39 -0.02 2.21 16 29 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.11 3.69 7.30 -2.91 -0.02 3.67 16 31 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 32 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.08 0.84 8.08 -2.38 -0.02 0.82 16 34 H 0.08 0.81 8.08 -2.39 -0.02 0.79 16 35 H 0.15 2.41 8.06 -2.91 -0.02 2.38 16 36 H 0.13 3.73 7.82 -2.91 -0.02 3.71 16 37 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 39 H 0.04 1.50 6.77 -2.38 -0.02 1.48 16 40 H -0.01 -0.61 7.83 -2.39 -0.02 -0.62 16 41 H 0.04 2.03 6.74 -2.39 -0.02 2.02 16 42 H 0.03 1.24 7.97 -2.39 -0.02 1.22 16 43 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -65.34 362.98 4.35 -60.99 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: 1.00 Total: 13.57 kcal Atomic # 6 Polarization: -25.38 SS G_CDS: 6.05 Total: -19.34 kcal Atomic # 7 Polarization: -101.50 SS G_CDS: -3.58 Total: -105.08 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: 5.24 SS G_CDS: -1.15 Total: 4.10 kcal Total: -65.34 4.35 -60.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134201205.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.858 kcal (2) G-P(sol) polarization free energy of solvation -65.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds