Wall clock time and date at job start Tue Mar 31 2020 10:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38045 * 120.00272 * 2 1 4 4 C 1.38861 * 119.99694 * 180.02562 * 3 2 1 5 5 N 1.40010 * 120.00351 * 179.97438 * 4 3 2 6 6 C 1.34773 * 119.99813 * 145.72527 * 5 4 3 7 7 O 1.21584 * 120.00299 * 355.04051 * 6 5 4 8 8 N 1.34779 * 119.99724 * 175.03797 * 6 5 4 9 9 C 1.46501 * 119.99678 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.47278 * 35.00731 * 9 8 6 11 11 C 1.52997 * 109.47248 * 274.99956 * 9 8 6 12 12 C 1.50707 * 109.46968 * 155.00210 * 9 8 6 13 13 H 1.08004 * 119.99728 * 0.02562 * 12 9 8 14 14 C 1.37870 * 120.00097 * 179.97438 * 12 9 8 15 15 N 1.31518 * 120.00282 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 120.00162 * 180.02562 * 14 12 9 17 17 H 1.48507 * 109.47063 * 59.99908 * 16 14 12 18 18 H 1.48497 * 109.47348 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47240 * 300.00438 * 16 14 12 20 20 C 1.38898 * 119.99169 * 0.02562 * 4 3 2 21 21 C 1.38014 * 119.99364 * 0.04023 * 20 4 3 22 22 C 1.38823 * 119.99365 * 180.02562 * 2 1 3 23 23 N 1.40331 * 119.99750 * 359.97438 * 22 2 1 24 24 C 1.35043 * 127.38529 * 187.25224 * 23 22 2 25 25 N 1.30757 * 107.27604 * 179.97438 * 24 23 22 26 26 N 1.28429 * 110.63858 * 359.97438 * 25 24 23 27 27 N 1.28944 * 110.20017 * 359.71116 * 26 25 24 28 28 H 1.08997 * 109.47207 * 96.52842 * 1 2 3 29 29 H 1.09003 * 109.46956 * 216.53277 * 1 2 3 30 30 H 1.09005 * 109.46770 * 336.52563 * 1 2 3 31 31 H 1.08001 * 119.99729 * 359.72444 * 3 2 1 32 32 H 0.97004 * 119.99842 * 325.72006 * 5 4 3 33 33 H 0.97003 * 120.00153 * 0.02562 * 8 6 5 34 34 H 1.09006 * 109.46927 * 60.00659 * 11 9 8 35 35 H 1.09006 * 109.46753 * 180.02562 * 11 9 8 36 36 H 1.08989 * 109.47664 * 300.00349 * 11 9 8 37 37 H 0.96992 * 120.00245 * 180.02562 * 15 14 12 38 38 H 1.08003 * 120.00783 * 180.02562 * 20 4 3 39 39 H 1.07996 * 119.99310 * 179.97438 * 21 20 4 40 40 H 1.07996 * 126.36338 * 0.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1955 0.0000 4 6 3.5859 1.1953 -0.0005 5 7 4.2862 2.4077 -0.0011 6 6 5.4586 2.5090 0.6558 7 8 5.8642 1.5770 1.3229 8 7 6.1816 3.6435 0.5730 9 6 7.4558 3.7537 1.2875 10 1 7.9557 2.7851 1.2904 11 6 7.1959 4.1980 2.7283 12 6 8.3315 4.7688 0.5990 13 1 7.9743 5.2809 -0.2823 14 6 9.5881 5.0446 1.0948 15 7 10.0228 4.4214 2.1683 16 14 10.6732 6.3033 0.2419 17 1 9.9917 7.6227 0.2378 18 1 11.9649 6.4150 0.9660 19 1 10.9259 5.8725 -1.1566 20 6 4.2801 -0.0077 -0.0016 21 6 3.5896 -1.2027 -0.0030 22 6 2.2010 -1.2023 -0.0005 23 7 1.4992 -2.4175 -0.0005 24 6 2.0109 -3.6599 0.1344 25 7 1.0105 -4.5001 0.0784 26 7 -0.0988 -3.8731 -0.0822 27 7 0.1116 -2.6020 -0.1335 28 1 -0.3633 -0.1168 -1.0210 29 1 -0.3633 -0.8258 0.6118 30 1 -0.3633 0.9427 0.4094 31 1 1.6573 2.1308 -0.0045 32 1 3.9274 3.1748 -0.4743 33 1 5.8578 4.3872 0.0410 34 1 6.5626 3.4638 3.2262 35 1 8.1441 4.2805 3.2596 36 1 6.6960 5.1665 2.7253 37 1 10.9067 4.6156 2.5173 38 1 5.3601 -0.0081 -0.0016 39 1 4.1294 -2.1381 -0.0042 40 1 3.0527 -3.9126 0.2653 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154725704.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:05 Heat of formation + Delta-G solvation = 127.648247 kcal Electronic energy + Delta-G solvation = -25130.018039 eV Core-core repulsion = 21369.271538 eV Total energy + Delta-G solvation = -3760.746501 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.40899 -40.62785 -39.12274 -36.09717 -34.86865 -33.93226 -33.27493 -32.48044 -32.13083 -29.83171 -28.40788 -27.46944 -25.37287 -24.83939 -23.71260 -22.65136 -22.06156 -20.91548 -19.94345 -18.70441 -18.38201 -17.43879 -16.87947 -16.51074 -16.07728 -15.63462 -15.17069 -14.70565 -14.47147 -14.36061 -14.08069 -13.81115 -13.55411 -13.45600 -13.22505 -12.75506 -12.55053 -12.49164 -12.17810 -12.04985 -11.76345 -11.41050 -11.19649 -11.07434 -11.05760 -10.87769 -10.67267 -10.44676 -10.33353 -10.08913 -9.68295 -9.18179 -9.11726 -8.67726 -8.27583 -7.94007 -6.22657 -4.32678 0.14098 1.00547 1.38576 1.55398 2.03825 2.87789 3.18464 3.24719 3.25334 3.25722 3.72382 3.81161 4.03047 4.22763 4.37781 4.51504 4.61724 4.73180 4.92468 5.06230 5.09890 5.10918 5.22856 5.31597 5.47425 5.54199 5.59706 5.94963 6.04363 6.09699 6.17916 6.33703 6.65204 6.80313 6.84426 6.94288 7.05860 7.27734 7.50100 7.67825 7.83597 8.03320 8.17072 8.55491 8.68843 9.01417 9.35274 10.83274 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.034547 B = 0.002338 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.288267 B =11975.059405 C =12344.505803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.039 4.039 3 C -0.143 4.143 4 C 0.208 3.792 5 N -0.695 5.695 6 C 0.692 3.308 7 O -0.579 6.579 8 N -0.715 5.715 9 C 0.280 3.720 10 H 0.051 0.949 11 C -0.149 4.149 12 C -0.537 4.537 13 H 0.061 0.939 14 C 0.067 3.933 15 N -0.882 5.882 16 Si 0.904 3.096 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.276 1.276 20 C -0.106 4.106 21 C -0.089 4.089 22 C 0.082 3.918 23 N -0.308 5.308 24 C 0.219 3.781 25 N -0.332 5.332 26 N -0.048 5.048 27 N -0.081 5.081 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.139 0.861 32 H 0.406 0.594 33 H 0.388 0.612 34 H 0.015 0.985 35 H 0.092 0.908 36 H 0.026 0.974 37 H 0.266 0.734 38 H 0.155 0.845 39 H 0.137 0.863 40 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.737 -7.038 -5.753 17.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.042 4.042 3 C -0.164 4.164 4 C 0.110 3.890 5 N -0.343 5.343 6 C 0.392 3.608 7 O -0.456 6.456 8 N -0.365 5.365 9 C 0.179 3.821 10 H 0.068 0.932 11 C -0.208 4.208 12 C -0.575 4.575 13 H 0.079 0.921 14 C -0.136 4.136 15 N -0.519 5.519 16 Si 0.731 3.269 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.201 1.201 20 C -0.127 4.127 21 C -0.110 4.110 22 C -0.011 4.011 23 N -0.098 5.098 24 C -0.078 4.078 25 N -0.182 5.182 26 N -0.043 5.043 27 N -0.066 5.066 28 H 0.097 0.903 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.157 0.843 32 H 0.242 0.758 33 H 0.220 0.780 34 H 0.034 0.966 35 H 0.110 0.890 36 H 0.046 0.954 37 H 0.076 0.924 38 H 0.172 0.828 39 H 0.154 0.846 40 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -15.439 -8.225 -5.101 18.222 hybrid contribution 1.340 1.932 -0.754 2.470 sum -14.098 -6.293 -5.855 16.512 Atomic orbital electron populations 1.21065 0.89346 1.03542 1.03535 1.19413 0.96887 0.90123 0.97767 1.20679 0.91958 0.97858 1.05943 1.17671 0.90269 0.85993 0.95094 1.43001 1.23038 1.12376 1.55844 1.16171 0.79679 0.84817 0.80144 1.90905 1.70674 1.39026 1.45010 1.45928 1.24042 1.13999 1.52574 1.18728 0.76960 0.98154 0.88275 0.93154 1.22118 1.02086 0.97405 0.99189 1.21141 1.00132 1.23669 1.12591 0.92077 1.24877 0.97584 0.96259 0.94911 1.69882 1.18999 1.41410 1.21638 0.86479 0.79566 0.81348 0.79528 1.20135 1.21066 1.20150 1.21149 1.01978 0.89528 1.00094 1.20703 0.90098 0.99636 1.00581 1.17391 0.90381 0.81535 1.11805 1.49015 1.06638 1.06890 1.47214 1.27414 1.02677 0.80307 0.97407 1.74471 0.94534 1.27901 1.21338 1.78058 1.18115 0.97915 1.10198 1.82690 0.89988 1.12019 1.21919 0.90342 0.89506 0.91256 0.84340 0.75798 0.77984 0.96562 0.88982 0.95444 0.92376 0.82764 0.84561 0.74621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 8.75 36.01 0.31 -0.73 16 2 C -0.04 -0.39 5.89 -104.47 -0.62 -1.01 16 3 C -0.14 -1.40 9.58 -39.42 -0.38 -1.78 16 4 C 0.21 2.50 6.26 -83.65 -0.52 1.98 16 5 N -0.70 -8.75 5.35 -14.20 -0.08 -8.83 16 6 C 0.69 12.24 8.26 -86.92 -0.72 11.52 16 7 O -0.58 -12.38 13.74 5.29 0.07 -12.31 16 8 N -0.71 -13.31 5.07 -59.81 -0.30 -13.61 16 9 C 0.28 6.64 2.56 -69.08 -0.18 6.46 16 10 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 11 C -0.15 -3.51 9.26 37.16 0.34 -3.17 16 12 C -0.54 -13.37 8.73 -34.44 -0.30 -13.67 16 13 H 0.06 1.44 7.74 -52.48 -0.41 1.04 16 14 C 0.07 1.73 5.30 -17.82 -0.09 1.63 16 15 N -0.88 -23.78 11.32 55.43 0.63 -23.15 16 16 Si 0.90 19.71 29.54 -169.99 -5.02 14.69 16 17 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 18 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 20 C -0.11 -1.32 8.65 -39.42 -0.34 -1.66 16 21 C -0.09 -0.87 9.48 -39.43 -0.37 -1.25 16 22 C 0.08 0.86 6.68 -83.52 -0.56 0.30 16 23 N -0.31 -3.29 3.82 -11.72 -0.04 -3.34 16 24 C 0.22 1.98 12.14 -90.16 -1.09 0.89 16 25 N -0.33 -3.98 12.16 29.64 0.36 -3.62 16 26 N -0.05 -0.64 13.39 60.35 0.81 0.17 16 27 N -0.08 -1.00 10.18 60.35 0.61 -0.38 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.09 0.89 5.79 -51.93 -0.30 0.59 16 30 H 0.07 0.50 8.04 -51.93 -0.42 0.08 16 31 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.41 3.69 8.84 -40.82 -0.36 3.33 16 33 H 0.39 6.04 8.56 -40.82 -0.35 5.69 16 34 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 36 H 0.03 0.60 8.14 -51.94 -0.42 0.17 16 37 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 38 H 0.15 2.22 6.47 -52.48 -0.34 1.88 16 39 H 0.14 0.92 6.92 -52.49 -0.36 0.55 16 40 H 0.24 0.96 7.24 -52.49 -0.38 0.58 16 LS Contribution 341.48 15.07 5.15 5.15 Total: -1.00 -31.61 341.48 -6.78 -38.40 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -4.45 Total: 7.32 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -4.52 Total: -0.48 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: 1.99 Total: -52.77 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.07 Total: -12.31 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.61 -6.78 -38.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154725704.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.043 kcal (2) G-P(sol) polarization free energy of solvation -31.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds