Wall clock time and date at job start Tue Mar 31 2020 10:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38045 * 120.00272 * 2 1 4 4 C 1.38861 * 119.99694 * 180.02562 * 3 2 1 5 5 N 1.40010 * 120.00351 * 179.97438 * 4 3 2 6 6 C 1.34773 * 119.99813 * 145.72527 * 5 4 3 7 7 O 1.21584 * 120.00299 * 355.04051 * 6 5 4 8 8 N 1.34779 * 119.99724 * 175.03797 * 6 5 4 9 9 C 1.46501 * 119.99678 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.47278 * 35.00731 * 9 8 6 11 11 C 1.52997 * 109.47248 * 274.99956 * 9 8 6 12 12 C 1.50707 * 109.46968 * 155.00210 * 9 8 6 13 13 H 1.08004 * 119.99728 * 0.02562 * 12 9 8 14 14 C 1.37870 * 120.00097 * 179.97438 * 12 9 8 15 15 N 1.31518 * 120.00282 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 120.00162 * 180.02562 * 14 12 9 17 17 H 1.48507 * 109.47063 * 59.99908 * 16 14 12 18 18 H 1.48497 * 109.47348 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47240 * 300.00438 * 16 14 12 20 20 C 1.38898 * 119.99169 * 0.02562 * 4 3 2 21 21 C 1.38014 * 119.99364 * 0.04023 * 20 4 3 22 22 C 1.38823 * 119.99365 * 180.02562 * 2 1 3 23 23 N 1.40331 * 119.99750 * 359.97438 * 22 2 1 24 24 C 1.35043 * 127.38529 * 187.25224 * 23 22 2 25 25 N 1.30757 * 107.27604 * 179.97438 * 24 23 22 26 26 N 1.28429 * 110.63858 * 359.97438 * 25 24 23 27 27 N 1.28944 * 110.20017 * 359.71116 * 26 25 24 28 28 H 1.08997 * 109.47207 * 96.52842 * 1 2 3 29 29 H 1.09003 * 109.46956 * 216.53277 * 1 2 3 30 30 H 1.09005 * 109.46770 * 336.52563 * 1 2 3 31 31 H 1.08001 * 119.99729 * 359.72444 * 3 2 1 32 32 H 0.97004 * 119.99842 * 325.72006 * 5 4 3 33 33 H 0.97003 * 120.00153 * 0.02562 * 8 6 5 34 34 H 1.09006 * 109.46927 * 60.00659 * 11 9 8 35 35 H 1.09006 * 109.46753 * 180.02562 * 11 9 8 36 36 H 1.08989 * 109.47664 * 300.00349 * 11 9 8 37 37 H 0.96992 * 120.00245 * 180.02562 * 15 14 12 38 38 H 1.08003 * 120.00783 * 180.02562 * 20 4 3 39 39 H 1.07996 * 119.99310 * 179.97438 * 21 20 4 40 40 H 1.07996 * 126.36338 * 0.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1955 0.0000 4 6 3.5859 1.1953 -0.0005 5 7 4.2862 2.4077 -0.0011 6 6 5.4586 2.5090 0.6558 7 8 5.8642 1.5770 1.3229 8 7 6.1816 3.6435 0.5730 9 6 7.4558 3.7537 1.2875 10 1 7.9557 2.7851 1.2904 11 6 7.1959 4.1980 2.7283 12 6 8.3315 4.7688 0.5990 13 1 7.9743 5.2809 -0.2823 14 6 9.5881 5.0446 1.0948 15 7 10.0228 4.4214 2.1683 16 14 10.6732 6.3033 0.2419 17 1 9.9917 7.6227 0.2378 18 1 11.9649 6.4150 0.9660 19 1 10.9259 5.8725 -1.1566 20 6 4.2801 -0.0077 -0.0016 21 6 3.5896 -1.2027 -0.0030 22 6 2.2010 -1.2023 -0.0005 23 7 1.4992 -2.4175 -0.0005 24 6 2.0109 -3.6599 0.1344 25 7 1.0105 -4.5001 0.0784 26 7 -0.0988 -3.8731 -0.0822 27 7 0.1116 -2.6020 -0.1335 28 1 -0.3633 -0.1168 -1.0210 29 1 -0.3633 -0.8258 0.6118 30 1 -0.3633 0.9427 0.4094 31 1 1.6573 2.1308 -0.0045 32 1 3.9274 3.1748 -0.4743 33 1 5.8578 4.3872 0.0410 34 1 6.5626 3.4638 3.2262 35 1 8.1441 4.2805 3.2596 36 1 6.6960 5.1665 2.7253 37 1 10.9067 4.6156 2.5173 38 1 5.3601 -0.0081 -0.0016 39 1 4.1294 -2.1381 -0.0042 40 1 3.0527 -3.9126 0.2653 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154725704.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:04 Heat of formation + Delta-G solvation = 107.055347 kcal Electronic energy + Delta-G solvation = -25130.911014 eV Core-core repulsion = 21369.271538 eV Total energy + Delta-G solvation = -3761.639477 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.25809 -41.73432 -40.25136 -37.33497 -36.37452 -35.01408 -34.36820 -33.94016 -33.00726 -31.19616 -29.73506 -28.26197 -27.31912 -25.73334 -24.57576 -23.89617 -22.91411 -22.30580 -21.36406 -19.83663 -19.48520 -18.60946 -17.78742 -17.73179 -17.24133 -16.94680 -16.62999 -15.90975 -15.87369 -15.29295 -15.02543 -14.96627 -14.61900 -14.52362 -14.32264 -14.05704 -13.78908 -13.51259 -13.35438 -13.10416 -12.97666 -12.88656 -12.76563 -12.65095 -12.26539 -12.22029 -12.13983 -11.89722 -11.52496 -11.30059 -11.10531 -11.01238 -10.58560 -9.95178 -9.81143 -9.00463 -8.16405 -6.33302 -0.68811 0.19022 0.50658 0.75174 1.20132 1.47218 1.48577 1.56159 1.70370 2.10573 2.42799 2.63962 3.07248 3.14613 3.34434 3.39568 3.63516 3.74503 3.88746 4.08910 4.21879 4.30926 4.42116 4.54934 4.71305 4.77315 4.78544 4.84553 4.94800 5.10457 5.17046 5.19647 5.29157 5.34173 5.41727 5.46730 5.60165 5.66140 5.84125 5.87966 6.10886 6.22667 6.74305 7.20221 7.30945 7.35291 7.64597 8.89593 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.034547 B = 0.002338 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.288267 B =11975.059405 C =12344.505803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.045 4.045 3 C -0.127 4.127 4 C 0.186 3.814 5 N -0.675 5.675 6 C 0.694 3.306 7 O -0.619 6.619 8 N -0.712 5.712 9 C 0.289 3.711 10 H 0.004 0.996 11 C -0.136 4.136 12 C -0.546 4.546 13 H 0.075 0.925 14 C 0.016 3.984 15 N -0.916 5.916 16 Si 0.970 3.030 17 H -0.265 1.265 18 H -0.289 1.289 19 H -0.271 1.271 20 C -0.126 4.126 21 C -0.079 4.079 22 C 0.080 3.920 23 N -0.313 5.313 24 C 0.233 3.767 25 N -0.356 5.356 26 N -0.071 5.071 27 N -0.090 5.090 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.167 0.833 32 H 0.425 0.575 33 H 0.405 0.595 34 H 0.012 0.988 35 H 0.066 0.934 36 H 0.040 0.960 37 H 0.265 0.735 38 H 0.129 0.871 39 H 0.167 0.833 40 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.748 -6.189 -6.952 18.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.048 4.048 3 C -0.148 4.148 4 C 0.089 3.911 5 N -0.324 5.324 6 C 0.394 3.606 7 O -0.500 6.500 8 N -0.365 5.365 9 C 0.186 3.814 10 H 0.022 0.978 11 C -0.195 4.195 12 C -0.584 4.584 13 H 0.093 0.907 14 C -0.185 4.185 15 N -0.555 5.555 16 Si 0.795 3.205 17 H -0.189 1.189 18 H -0.214 1.214 19 H -0.196 1.196 20 C -0.147 4.147 21 C -0.100 4.100 22 C -0.013 4.013 23 N -0.102 5.102 24 C -0.063 4.063 25 N -0.206 5.206 26 N -0.065 5.065 27 N -0.076 5.076 28 H 0.100 0.900 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.184 0.816 32 H 0.264 0.736 33 H 0.240 0.760 34 H 0.031 0.969 35 H 0.085 0.915 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.147 0.853 39 H 0.185 0.815 40 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges -16.529 -7.365 -6.352 19.178 hybrid contribution 1.580 1.553 -0.388 2.250 sum -14.949 -5.811 -6.739 17.397 Atomic orbital electron populations 1.21052 0.88363 1.04073 1.03623 1.19680 0.97659 0.90155 0.97302 1.20849 0.90820 0.98969 1.04188 1.17868 0.91150 0.85376 0.96740 1.42572 1.21269 1.13547 1.55004 1.16210 0.80620 0.83750 0.79996 1.90882 1.72029 1.40238 1.46814 1.45469 1.22930 1.15224 1.52837 1.18252 0.78755 0.95511 0.88904 0.97840 1.21937 1.00709 0.97895 0.98941 1.21497 1.00453 1.23548 1.12897 0.90712 1.25753 0.99092 0.98130 0.95492 1.70035 1.19295 1.42966 1.23156 0.85422 0.77480 0.79230 0.78341 1.18942 1.21447 1.19610 1.21053 1.00996 0.90924 1.01740 1.20875 0.89967 1.00069 0.99072 1.17538 0.90596 0.81701 1.11462 1.49043 1.06289 1.07425 1.47486 1.28303 1.03888 0.79194 0.94918 1.74422 0.94939 1.28858 1.22388 1.78050 1.19040 0.98384 1.11052 1.82669 0.91003 1.11711 1.22187 0.89963 0.90856 0.89279 0.81557 0.73574 0.75992 0.96855 0.91503 0.94137 0.92552 0.85312 0.81518 0.70161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.77 8.75 71.24 0.62 -1.14 16 2 C -0.04 -0.81 5.89 -19.77 -0.12 -0.92 16 3 C -0.13 -2.17 9.58 22.37 0.21 -1.95 16 4 C 0.19 4.20 6.26 38.14 0.24 4.44 16 5 N -0.67 -16.07 5.35 -317.11 -1.70 -17.76 16 6 C 0.69 24.47 8.26 179.05 1.48 25.95 16 7 O -0.62 -27.19 13.74 -3.98 -0.05 -27.25 16 8 N -0.71 -26.27 5.07 -461.40 -2.34 -28.61 16 9 C 0.29 13.95 2.56 44.25 0.11 14.06 16 10 H 0.00 0.21 7.58 -2.39 -0.02 0.19 16 11 C -0.14 -6.50 9.26 71.98 0.67 -5.83 16 12 C -0.55 -27.04 8.73 25.60 0.22 -26.82 16 13 H 0.07 3.42 7.74 -2.91 -0.02 3.39 16 14 C 0.02 0.80 5.30 84.65 0.45 1.25 16 15 N -0.92 -50.41 11.32 21.45 0.24 -50.17 16 16 Si 0.97 40.01 29.54 68.60 2.03 42.04 16 17 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 18 H -0.29 -11.97 7.11 99.48 0.71 -11.27 16 19 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 20 C -0.13 -3.03 8.65 22.37 0.19 -2.84 16 21 C -0.08 -1.41 9.48 22.37 0.21 -1.19 16 22 C 0.08 1.50 6.68 38.07 0.25 1.76 16 23 N -0.31 -6.08 3.82 -190.98 -0.73 -6.81 16 24 C 0.23 3.67 12.14 180.19 2.19 5.86 16 25 N -0.36 -8.06 12.16 -60.14 -0.73 -8.80 16 26 N -0.07 -1.83 13.39 37.02 0.50 -1.33 16 27 N -0.09 -2.12 10.18 37.02 0.38 -1.75 16 28 H 0.08 1.22 8.14 -2.39 -0.02 1.21 16 29 H 0.07 1.39 5.79 -2.39 -0.01 1.37 16 30 H 0.09 1.01 8.04 -2.38 -0.02 0.99 16 31 H 0.17 1.85 8.06 -2.91 -0.02 1.82 16 32 H 0.43 6.72 8.84 -92.71 -0.82 5.90 16 33 H 0.40 12.00 8.56 -92.71 -0.79 11.21 16 34 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 35 H 0.07 3.54 6.07 -2.38 -0.01 3.53 16 36 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 38 H 0.13 3.83 6.47 -2.91 -0.02 3.81 16 39 H 0.17 1.77 6.92 -2.91 -0.02 1.75 16 40 H 0.28 1.24 7.24 -2.91 -0.02 1.22 16 Total: -1.00 -70.90 341.48 3.84 -67.06 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: -0.49 Total: 20.76 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: 6.74 Total: 12.62 kcal Atomic # 7 Polarization: -110.85 SS G_CDS: -4.38 Total: -115.23 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -0.05 Total: -27.25 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.03 Total: 42.04 kcal Total: -70.90 3.84 -67.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154725704.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.119 kcal (2) G-P(sol) polarization free energy of solvation -70.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds