Wall clock time and date at job start Tue Mar 31 2020 10:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38187 * 119.96160 * 2 1 4 4 C 1.38131 * 120.13561 * 179.97438 * 3 2 1 5 5 C 1.38926 * 120.05798 * 0.27009 * 4 3 2 6 6 N 1.39947 * 120.03677 * 179.72312 * 5 4 3 7 7 C 1.34767 * 120.00211 * 35.16566 * 6 5 4 8 8 O 1.21585 * 120.00231 * 355.64128 * 7 6 5 9 9 N 1.34781 * 120.00135 * 175.63792 * 7 6 5 10 10 C 1.46506 * 119.99820 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.46877 * 325.00031 * 10 9 7 12 12 C 1.52995 * 109.47143 * 85.00415 * 10 9 7 13 13 C 1.50699 * 109.46785 * 205.00324 * 10 9 7 14 14 H 1.07999 * 120.00285 * 359.97438 * 13 10 9 15 15 C 1.37873 * 119.99800 * 179.97438 * 13 10 9 16 16 N 1.31512 * 120.00328 * 0.02562 * 15 13 10 17 17 Si 1.86804 * 120.00120 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.47086 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47003 * 120.00078 * 17 15 13 20 20 H 1.48501 * 109.47672 * 240.00167 * 17 15 13 21 21 C 1.38740 * 119.92556 * 359.43080 * 5 4 3 22 22 C 1.38722 * 119.86088 * 0.56639 * 21 5 4 23 23 N 1.40267 * 120.02585 * 179.74291 * 22 21 5 24 24 C 1.35070 * 127.38568 * 49.41048 * 23 22 21 25 25 N 1.30741 * 107.27403 * 179.97438 * 24 23 22 26 26 N 1.28428 * 110.64288 * 359.97438 * 25 24 23 27 27 N 1.28941 * 110.20581 * 359.70852 * 26 25 24 28 28 H 1.09006 * 109.47164 * 85.12009 * 1 2 3 29 29 H 1.09005 * 109.47048 * 205.11868 * 1 2 3 30 30 H 1.08996 * 109.47562 * 325.11631 * 1 2 3 31 31 H 1.08002 * 119.93177 * 359.97431 * 3 2 1 32 32 H 1.07998 * 119.97048 * 179.97438 * 4 3 2 33 33 H 0.97009 * 120.00102 * 215.16772 * 6 5 4 34 34 H 0.96997 * 120.00034 * 0.02562 * 9 7 6 35 35 H 1.08994 * 109.47129 * 59.99286 * 12 10 9 36 36 H 1.08994 * 109.46988 * 180.02562 * 12 10 9 37 37 H 1.09005 * 109.46632 * 299.99686 * 12 10 9 38 38 H 0.96996 * 120.00540 * 180.02562 * 16 15 13 39 39 H 1.08001 * 120.06831 * 180.29790 * 21 5 4 40 40 H 1.08000 * 126.36144 * 359.97078 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1972 0.0000 4 6 3.5785 1.2014 0.0005 5 6 4.2780 0.0011 -0.0046 6 7 5.6774 0.0059 -0.0099 7 6 6.3506 0.9609 0.6617 8 8 5.7444 1.8634 1.2060 9 7 7.6959 0.9156 0.7300 10 6 8.4276 1.9535 1.4606 11 1 7.9174 2.9094 1.3421 12 6 8.4864 1.5872 2.9449 13 6 9.8278 2.0603 0.9137 14 1 10.1415 1.4189 0.1034 15 6 10.7085 2.9768 1.4479 16 7 10.3268 3.7574 2.4350 17 14 12.4444 3.1087 0.7706 18 1 12.6227 2.1265 -0.3288 19 1 12.6693 4.4809 0.2492 20 1 13.4210 2.8241 1.8525 21 6 3.5876 -1.2024 0.0017 22 6 2.2004 -1.2029 0.0012 23 7 1.4990 -2.4175 0.0021 24 6 1.6933 -3.4762 0.8181 25 7 0.8258 -4.3932 0.4777 26 7 0.0960 -3.9862 -0.4976 27 7 0.4378 -2.7914 -0.8413 28 1 -0.3634 0.0874 -1.0240 29 1 -0.3633 -0.9305 0.4363 30 1 -0.3634 0.8430 0.5877 31 1 1.6554 2.1315 -0.0004 32 1 4.1152 2.1386 0.0001 33 1 6.1630 -0.6782 -0.4970 34 1 8.1796 0.1958 0.2955 35 1 8.9965 0.6313 3.0633 36 1 9.0303 2.3596 3.4885 37 1 7.4735 1.5099 3.3403 38 1 10.9462 4.4025 2.8106 39 1 4.1291 -2.1368 0.0026 40 1 2.4286 -3.5512 1.6056 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154731962.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:08 Heat of formation + Delta-G solvation = 124.375308 kcal Electronic energy + Delta-G solvation = -25198.366105 eV Core-core repulsion = 21437.477678 eV Total energy + Delta-G solvation = -3760.888427 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.43533 -40.62942 -39.11157 -35.99803 -34.87614 -34.48005 -32.76096 -32.48709 -31.60167 -30.45728 -28.93823 -26.70013 -25.36804 -24.99847 -23.48481 -22.72413 -22.26968 -21.06987 -20.08257 -18.80099 -18.42894 -17.01319 -16.68160 -16.24999 -15.97881 -15.69037 -15.51041 -14.99238 -14.65855 -14.35969 -14.20022 -13.87925 -13.59970 -13.39752 -12.89021 -12.77754 -12.53278 -12.38507 -12.23802 -11.86822 -11.82396 -11.40377 -11.23320 -11.18067 -11.08284 -10.86988 -10.71365 -10.43473 -10.34410 -10.17832 -9.62951 -9.17506 -9.15145 -8.68795 -8.34950 -7.97367 -6.23157 -4.32885 0.29618 0.94845 1.10449 1.54135 1.99865 2.89667 3.16669 3.19122 3.25354 3.27394 3.68179 3.85932 4.22579 4.27941 4.40885 4.53435 4.66864 4.74323 4.83580 4.99208 5.09557 5.10023 5.19281 5.29984 5.36128 5.37444 5.68990 5.82999 6.04905 6.07214 6.17509 6.39105 6.64822 6.80522 6.84260 6.93641 7.05852 7.27953 7.50450 7.67493 7.83746 8.03119 8.13472 8.55743 8.68979 9.01679 9.35247 10.82880 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.029308 B = 0.002450 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.125399 B =11426.194012 C =11886.412359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.080 4.080 3 C -0.087 4.087 4 C -0.094 4.094 5 C 0.196 3.804 6 N -0.695 5.695 7 C 0.693 3.307 8 O -0.580 6.580 9 N -0.715 5.715 10 C 0.280 3.720 11 H 0.051 0.949 12 C -0.149 4.149 13 C -0.536 4.536 14 H 0.062 0.938 15 C 0.067 3.933 16 N -0.882 5.882 17 Si 0.903 3.097 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.282 1.282 21 C -0.140 4.140 22 C 0.125 3.875 23 N -0.321 5.321 24 C 0.231 3.769 25 N -0.336 5.336 26 N -0.044 5.044 27 N -0.073 5.073 28 H 0.080 0.920 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.140 0.860 32 H 0.157 0.843 33 H 0.406 0.594 34 H 0.388 0.612 35 H 0.026 0.974 36 H 0.092 0.908 37 H 0.015 0.985 38 H 0.265 0.735 39 H 0.135 0.865 40 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.925 -9.320 -4.179 17.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.083 4.083 3 C -0.106 4.106 4 C -0.114 4.114 5 C 0.098 3.902 6 N -0.343 5.343 7 C 0.393 3.607 8 O -0.457 6.457 9 N -0.366 5.366 10 C 0.178 3.822 11 H 0.069 0.931 12 C -0.207 4.207 13 C -0.574 4.574 14 H 0.080 0.920 15 C -0.137 4.137 16 N -0.519 5.519 17 Si 0.730 3.270 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.164 4.164 22 C 0.033 3.967 23 N -0.112 5.112 24 C -0.067 4.067 25 N -0.185 5.185 26 N -0.040 5.040 27 N -0.058 5.058 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.158 0.842 32 H 0.174 0.826 33 H 0.241 0.759 34 H 0.220 0.780 35 H 0.046 0.954 36 H 0.110 0.890 37 H 0.034 0.966 38 H 0.075 0.925 39 H 0.153 0.847 40 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -15.340 -8.863 -4.264 18.222 hybrid contribution 2.357 -0.176 -0.235 2.376 sum -12.982 -9.040 -4.499 16.447 Atomic orbital electron populations 1.20764 0.90134 1.02649 1.03184 1.19740 0.96721 0.91062 1.00768 1.20913 0.93624 0.97050 0.99037 1.21721 0.93830 0.99127 0.96767 1.17148 0.82761 0.92526 0.97783 1.42861 1.03762 1.32969 1.54737 1.16144 0.83146 0.81906 0.79469 1.90881 1.67547 1.35765 1.51517 1.45918 1.02961 1.31174 1.56503 1.18734 0.90198 0.85466 0.87755 0.93148 1.22110 0.98078 1.01151 0.99393 1.21219 0.96102 1.21114 1.18992 0.91985 1.24878 0.98939 0.95089 0.94748 1.69900 1.35816 1.21779 1.24425 0.86373 0.83677 0.78064 0.78855 1.19749 1.20813 1.20809 1.20584 0.91260 0.98277 1.06293 1.16833 0.89405 0.81255 1.09186 1.48927 1.25203 1.13042 1.23994 1.27557 0.99437 0.83265 0.96425 1.74488 1.06821 1.26075 1.11140 1.78068 1.16875 1.02935 1.06087 1.82739 1.00870 1.09091 1.13063 0.90167 0.92306 0.90830 0.84245 0.82598 0.75911 0.78004 0.95446 0.88995 0.96566 0.92491 0.84727 0.74593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 9.24 36.01 0.33 -0.64 16 2 C -0.08 -0.80 5.90 -104.42 -0.62 -1.42 16 3 C -0.09 -0.89 9.70 -39.64 -0.38 -1.28 16 4 C -0.09 -1.18 8.69 -39.37 -0.34 -1.52 16 5 C 0.20 2.34 6.29 -83.71 -0.53 1.81 16 6 N -0.70 -8.70 5.34 -14.24 -0.08 -8.78 16 7 C 0.69 12.19 8.37 -86.92 -0.73 11.47 16 8 O -0.58 -12.28 13.45 5.29 0.07 -12.21 16 9 N -0.71 -13.27 5.07 -59.81 -0.30 -13.58 16 10 C 0.28 6.61 2.56 -69.08 -0.18 6.44 16 11 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 12 C -0.15 -3.47 9.26 37.15 0.34 -3.13 16 13 C -0.54 -13.35 8.73 -34.44 -0.30 -13.65 16 14 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 15 C 0.07 1.72 5.30 -17.82 -0.09 1.62 16 16 N -0.88 -23.76 11.32 55.43 0.63 -23.13 16 17 Si 0.90 19.74 29.54 -169.99 -5.02 14.72 16 18 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 21 C -0.14 -1.36 9.62 -39.22 -0.38 -1.73 16 22 C 0.12 1.27 6.28 -83.59 -0.53 0.74 16 23 N -0.32 -3.31 3.06 -11.76 -0.04 -3.35 16 24 C 0.23 2.02 12.57 -90.15 -1.13 0.89 16 25 N -0.34 -3.91 12.15 29.64 0.36 -3.55 16 26 N -0.04 -0.58 13.39 60.35 0.81 0.23 16 27 N -0.07 -0.90 12.25 60.35 0.74 -0.16 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.58 6.58 -51.93 -0.34 0.24 16 30 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 31 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 32 H 0.16 2.32 6.23 -52.49 -0.33 1.99 16 33 H 0.41 3.72 8.84 -40.82 -0.36 3.36 16 34 H 0.39 6.04 8.56 -40.82 -0.35 5.69 16 35 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 39 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.24 0.98 8.06 -52.49 -0.42 0.55 16 LS Contribution 346.03 15.07 5.21 5.21 Total: -1.00 -31.16 346.03 -6.73 -37.89 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -4.59 Total: 7.10 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -4.53 Total: -0.40 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: 2.12 Total: -52.32 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.07 Total: -12.21 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.16 -6.73 -37.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154731962.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.266 kcal (2) G-P(sol) polarization free energy of solvation -31.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds