Wall clock time and date at job start Tue Mar 31 2020 10:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38187 * 119.96160 * 2 1 4 4 C 1.38131 * 120.13561 * 179.97438 * 3 2 1 5 5 C 1.38926 * 120.05798 * 0.27009 * 4 3 2 6 6 N 1.39947 * 120.03677 * 179.72312 * 5 4 3 7 7 C 1.34767 * 120.00211 * 35.16566 * 6 5 4 8 8 O 1.21585 * 120.00231 * 355.64128 * 7 6 5 9 9 N 1.34781 * 120.00135 * 175.63792 * 7 6 5 10 10 C 1.46506 * 119.99820 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.46877 * 325.00031 * 10 9 7 12 12 C 1.52995 * 109.47143 * 85.00415 * 10 9 7 13 13 C 1.50699 * 109.46785 * 205.00324 * 10 9 7 14 14 H 1.07999 * 120.00285 * 359.97438 * 13 10 9 15 15 C 1.37873 * 119.99800 * 179.97438 * 13 10 9 16 16 N 1.31512 * 120.00328 * 0.02562 * 15 13 10 17 17 Si 1.86804 * 120.00120 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.47086 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47003 * 120.00078 * 17 15 13 20 20 H 1.48501 * 109.47672 * 240.00167 * 17 15 13 21 21 C 1.38740 * 119.92556 * 359.43080 * 5 4 3 22 22 C 1.38722 * 119.86088 * 0.56639 * 21 5 4 23 23 N 1.40267 * 120.02585 * 179.74291 * 22 21 5 24 24 C 1.35070 * 127.38568 * 49.41048 * 23 22 21 25 25 N 1.30741 * 107.27403 * 179.97438 * 24 23 22 26 26 N 1.28428 * 110.64288 * 359.97438 * 25 24 23 27 27 N 1.28941 * 110.20581 * 359.70852 * 26 25 24 28 28 H 1.09006 * 109.47164 * 85.12009 * 1 2 3 29 29 H 1.09005 * 109.47048 * 205.11868 * 1 2 3 30 30 H 1.08996 * 109.47562 * 325.11631 * 1 2 3 31 31 H 1.08002 * 119.93177 * 359.97431 * 3 2 1 32 32 H 1.07998 * 119.97048 * 179.97438 * 4 3 2 33 33 H 0.97009 * 120.00102 * 215.16772 * 6 5 4 34 34 H 0.96997 * 120.00034 * 0.02562 * 9 7 6 35 35 H 1.08994 * 109.47129 * 59.99286 * 12 10 9 36 36 H 1.08994 * 109.46988 * 180.02562 * 12 10 9 37 37 H 1.09005 * 109.46632 * 299.99686 * 12 10 9 38 38 H 0.96996 * 120.00540 * 180.02562 * 16 15 13 39 39 H 1.08001 * 120.06831 * 180.29790 * 21 5 4 40 40 H 1.08000 * 126.36144 * 359.97078 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1972 0.0000 4 6 3.5785 1.2014 0.0005 5 6 4.2780 0.0011 -0.0046 6 7 5.6774 0.0059 -0.0099 7 6 6.3506 0.9609 0.6617 8 8 5.7444 1.8634 1.2060 9 7 7.6959 0.9156 0.7300 10 6 8.4276 1.9535 1.4606 11 1 7.9174 2.9094 1.3421 12 6 8.4864 1.5872 2.9449 13 6 9.8278 2.0603 0.9137 14 1 10.1415 1.4189 0.1034 15 6 10.7085 2.9768 1.4479 16 7 10.3268 3.7574 2.4350 17 14 12.4444 3.1087 0.7706 18 1 12.6227 2.1265 -0.3288 19 1 12.6693 4.4809 0.2492 20 1 13.4210 2.8241 1.8525 21 6 3.5876 -1.2024 0.0017 22 6 2.2004 -1.2029 0.0012 23 7 1.4990 -2.4175 0.0021 24 6 1.6933 -3.4762 0.8181 25 7 0.8258 -4.3932 0.4777 26 7 0.0960 -3.9862 -0.4976 27 7 0.4378 -2.7914 -0.8413 28 1 -0.3634 0.0874 -1.0240 29 1 -0.3633 -0.9305 0.4363 30 1 -0.3634 0.8430 0.5877 31 1 1.6554 2.1315 -0.0004 32 1 4.1152 2.1386 0.0001 33 1 6.1630 -0.6782 -0.4970 34 1 8.1796 0.1958 0.2955 35 1 8.9965 0.6313 3.0633 36 1 9.0303 2.3596 3.4885 37 1 7.4735 1.5099 3.3403 38 1 10.9462 4.4025 2.8106 39 1 4.1291 -2.1368 0.0026 40 1 2.4286 -3.5512 1.6056 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154731962.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:07 Heat of formation + Delta-G solvation = 104.550053 kcal Electronic energy + Delta-G solvation = -25199.225793 eV Core-core repulsion = 21437.477678 eV Total energy + Delta-G solvation = -3761.748114 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.26015 -41.74077 -40.24285 -37.27761 -36.28402 -35.51683 -34.37984 -33.41411 -32.65897 -31.30583 -30.58867 -27.63284 -27.29842 -25.84627 -24.32292 -23.85891 -23.32270 -22.20887 -21.59259 -20.02871 -19.56295 -18.22237 -17.75562 -17.38500 -16.99948 -16.93080 -16.55037 -16.37815 -15.93627 -15.70739 -15.07850 -14.99667 -14.75140 -14.37050 -14.35624 -13.83459 -13.73760 -13.56154 -13.17195 -13.07550 -12.97394 -12.83379 -12.78012 -12.66431 -12.26542 -12.21580 -12.10843 -12.03972 -11.55072 -11.33738 -11.07232 -11.00899 -10.60363 -10.01645 -9.84231 -9.09119 -8.16922 -6.33497 -0.51803 0.09315 0.26261 0.75038 1.18986 1.45610 1.47271 1.58007 1.72689 2.08656 2.42368 2.54592 3.14408 3.22610 3.38366 3.54383 3.68956 3.77260 3.89442 3.99735 4.13837 4.28124 4.35828 4.53893 4.58235 4.68605 4.76790 4.90471 4.95763 5.06055 5.11572 5.16927 5.26042 5.32639 5.42047 5.48716 5.60987 5.66856 5.84214 5.86491 6.11459 6.22234 6.74793 7.20585 7.30123 7.35278 7.65413 8.89482 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.029308 B = 0.002450 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.125399 B =11426.194012 C =11886.412359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.078 4.078 3 C -0.083 4.083 4 C -0.112 4.112 5 C 0.175 3.825 6 N -0.674 5.674 7 C 0.695 3.305 8 O -0.619 6.619 9 N -0.712 5.712 10 C 0.289 3.711 11 H 0.003 0.997 12 C -0.135 4.135 13 C -0.544 4.544 14 H 0.074 0.926 15 C 0.016 3.984 16 N -0.916 5.916 17 Si 0.970 3.030 18 H -0.260 1.260 19 H -0.286 1.286 20 H -0.280 1.280 21 C -0.118 4.118 22 C 0.122 3.878 23 N -0.322 5.322 24 C 0.247 3.753 25 N -0.358 5.358 26 N -0.064 5.064 27 N -0.089 5.089 28 H 0.084 0.916 29 H 0.048 0.952 30 H 0.089 0.911 31 H 0.158 0.842 32 H 0.128 0.872 33 H 0.424 0.576 34 H 0.405 0.595 35 H 0.040 0.960 36 H 0.066 0.934 37 H 0.013 0.987 38 H 0.265 0.735 39 H 0.165 0.835 40 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.653 -11.157 -4.801 18.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.081 4.081 3 C -0.102 4.102 4 C -0.133 4.133 5 C 0.078 3.922 6 N -0.323 5.323 7 C 0.395 3.605 8 O -0.500 6.500 9 N -0.365 5.365 10 C 0.186 3.814 11 H 0.021 0.979 12 C -0.194 4.194 13 C -0.582 4.582 14 H 0.093 0.907 15 C -0.185 4.185 16 N -0.555 5.555 17 Si 0.795 3.205 18 H -0.184 1.184 19 H -0.212 1.212 20 H -0.206 1.206 21 C -0.141 4.141 22 C 0.030 3.970 23 N -0.113 5.113 24 C -0.049 4.049 25 N -0.208 5.208 26 N -0.060 5.060 27 N -0.074 5.074 28 H 0.103 0.897 29 H 0.067 0.933 30 H 0.108 0.892 31 H 0.176 0.824 32 H 0.145 0.855 33 H 0.263 0.737 34 H 0.240 0.760 35 H 0.059 0.941 36 H 0.084 0.916 37 H 0.033 0.967 38 H 0.074 0.926 39 H 0.183 0.817 40 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges -15.096 -10.773 -4.936 19.192 hybrid contribution 2.142 0.383 -0.037 2.176 sum -12.954 -10.390 -4.973 17.335 Atomic orbital electron populations 1.20771 0.89168 1.02789 1.03686 1.19940 0.97453 0.90971 0.99698 1.21025 0.92711 0.98108 0.98339 1.21608 0.94872 0.98480 0.98305 1.17239 0.82177 0.93204 0.99579 1.42415 1.04096 1.32014 1.53821 1.16184 0.82688 0.82214 0.79391 1.90867 1.68247 1.37645 1.53204 1.45457 1.03501 1.30796 1.56712 1.18253 0.89843 0.84910 0.88432 0.97917 1.21923 0.97620 1.00793 0.99055 1.21561 0.96514 1.21082 1.19082 0.90746 1.25744 1.02880 0.94839 0.95004 1.70045 1.37142 1.22514 1.25765 0.85330 0.78869 0.77900 0.78410 1.18363 1.21184 1.20611 1.20672 0.90975 0.98431 1.04033 1.16913 0.89647 0.81295 1.09138 1.48903 1.24949 1.13334 1.24139 1.28412 0.98789 0.81702 0.95985 1.74445 1.07717 1.27281 1.11340 1.78064 1.17683 1.03338 1.06881 1.82704 1.01782 1.09042 1.13908 0.89723 0.93346 0.89186 0.82446 0.85464 0.73699 0.76020 0.94082 0.91569 0.96743 0.92566 0.81741 0.70204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.69 9.24 71.24 0.66 -1.03 16 2 C -0.08 -1.41 5.90 -19.73 -0.12 -1.53 16 3 C -0.08 -1.60 9.70 22.23 0.22 -1.39 16 4 C -0.11 -2.78 8.69 22.41 0.19 -2.59 16 5 C 0.17 3.89 6.29 38.13 0.24 4.13 16 6 N -0.67 -15.81 5.34 -317.24 -1.69 -17.50 16 7 C 0.69 24.29 8.37 179.06 1.50 25.79 16 8 O -0.62 -26.99 13.45 -3.99 -0.05 -27.04 16 9 N -0.71 -26.10 5.07 -461.41 -2.34 -28.44 16 10 C 0.29 13.89 2.56 44.24 0.11 14.00 16 11 H 0.00 0.17 7.58 -2.39 -0.02 0.15 16 12 C -0.13 -6.40 9.26 71.98 0.67 -5.73 16 13 C -0.54 -26.96 8.73 25.60 0.22 -26.73 16 14 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 15 C 0.02 0.80 5.30 84.65 0.45 1.25 16 16 N -0.92 -50.37 11.32 21.45 0.24 -50.13 16 17 Si 0.97 40.11 29.54 68.60 2.03 42.14 16 18 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 19 H -0.29 -11.90 7.11 99.48 0.71 -11.19 16 20 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 21 C -0.12 -1.92 9.62 22.51 0.22 -1.70 16 22 C 0.12 2.16 6.28 38.05 0.24 2.40 16 23 N -0.32 -5.84 3.06 -191.11 -0.58 -6.42 16 24 C 0.25 3.56 12.57 180.18 2.27 5.83 16 25 N -0.36 -7.65 12.15 -60.13 -0.73 -8.38 16 26 N -0.06 -1.61 13.39 37.02 0.50 -1.12 16 27 N -0.09 -2.07 12.25 37.02 0.45 -1.61 16 28 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 29 H 0.05 0.88 6.58 -2.38 -0.02 0.86 16 30 H 0.09 1.11 8.12 -2.39 -0.02 1.09 16 31 H 0.16 2.36 8.06 -2.91 -0.02 2.33 16 32 H 0.13 3.97 6.23 -2.91 -0.02 3.95 16 33 H 0.42 6.65 8.84 -92.70 -0.82 5.83 16 34 H 0.40 11.92 8.56 -92.71 -0.79 11.13 16 35 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.07 3.49 6.07 -2.39 -0.01 3.48 16 37 H 0.01 0.64 8.14 -2.38 -0.02 0.62 16 38 H 0.27 13.81 8.31 -92.71 -0.77 13.04 16 39 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 40 H 0.28 1.00 8.06 -2.91 -0.02 0.97 16 Total: -1.00 -69.81 346.03 4.18 -65.63 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: -0.50 Total: 20.19 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: 6.86 Total: 12.69 kcal Atomic # 7 Polarization: -109.44 SS G_CDS: -4.16 Total: -113.60 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -0.05 Total: -27.04 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.14 kcal Total: -69.81 4.18 -65.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154731962.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.178 kcal (2) G-P(sol) polarization free energy of solvation -69.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds