Wall clock time and date at job start Tue Mar 31 2020 11:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30739 * 126.35718 * 2 1 4 4 N 1.28433 * 110.64413 * 179.97438 * 3 2 1 5 5 N 1.28942 * 110.20106 * 359.73173 * 4 3 2 6 6 N 1.35062 * 126.36791 * 179.97438 * 2 1 3 7 7 C 1.40271 * 127.38555 * 359.97438 * 6 2 1 8 8 C 1.38886 * 120.02686 * 324.96896 * 7 6 2 9 9 C 1.38152 * 120.06925 * 180.02562 * 8 7 6 10 10 C 1.38173 * 120.13665 * 359.68866 * 9 8 7 11 11 C 1.38889 * 120.05805 * 0.58667 * 10 9 8 12 12 N 1.39951 * 120.03500 * 179.70258 * 11 10 9 13 13 C 1.34774 * 119.99660 * 146.42927 * 12 11 10 14 14 O 1.21588 * 120.00429 * 354.68140 * 13 12 11 15 15 N 1.34781 * 119.99815 * 174.68429 * 13 12 11 16 16 C 1.46502 * 119.99735 * 180.02562 * 15 13 12 17 17 H 1.09001 * 109.47595 * 34.99276 * 16 15 13 18 18 C 1.53001 * 109.46711 * 274.99692 * 16 15 13 19 19 C 1.50697 * 109.47072 * 155.00064 * 16 15 13 20 20 H 1.07997 * 120.00422 * 359.97438 * 19 16 15 21 21 C 1.37880 * 120.00038 * 180.02562 * 19 16 15 22 22 N 1.31514 * 120.00049 * 359.97438 * 21 19 16 23 23 Si 1.86801 * 120.00040 * 179.97438 * 21 19 16 24 24 H 1.48500 * 109.47239 * 89.99713 * 23 21 19 25 25 H 1.48504 * 109.47158 * 209.99353 * 23 21 19 26 26 H 1.48497 * 109.46989 * 329.99538 * 23 21 19 27 27 C 1.38672 * 120.02974 * 144.99434 * 7 6 2 28 28 H 1.09001 * 109.46928 * 269.99871 * 1 2 3 29 29 H 1.08993 * 109.47510 * 30.00641 * 1 2 3 30 30 H 1.09006 * 109.46606 * 150.00609 * 1 2 3 31 31 H 1.07995 * 119.96430 * 0.03072 * 8 7 6 32 32 H 1.08002 * 119.92714 * 179.97438 * 9 8 7 33 33 H 1.08007 * 119.97149 * 180.31956 * 10 9 8 34 34 H 0.97005 * 120.00131 * 326.42261 * 12 11 10 35 35 H 0.97000 * 119.99843 * 359.97438 * 15 13 12 36 36 H 1.08999 * 109.47277 * 299.99566 * 18 16 15 37 37 H 1.08996 * 109.47585 * 60.00108 * 18 16 15 38 38 H 1.09007 * 109.46934 * 180.02562 * 18 16 15 39 39 H 0.96994 * 119.99994 * 180.02562 * 22 21 19 40 40 H 1.08001 * 120.06775 * 359.95868 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2821 1.0529 0.0000 4 7 3.5184 0.7051 0.0005 5 7 3.6193 -0.5804 0.0066 6 7 2.3079 -1.0876 0.0005 7 6 1.9155 -2.4342 0.0016 8 6 0.7760 -2.8255 0.6925 9 6 0.3890 -4.1517 0.6946 10 6 1.1301 -5.0918 0.0045 11 6 2.2737 -4.7075 -0.6835 12 7 3.0275 -5.6611 -1.3772 13 6 3.6587 -5.3209 -2.5184 14 8 3.4958 -4.2151 -2.9969 15 7 4.4705 -6.2066 -3.1292 16 6 5.1570 -5.8366 -4.3694 17 1 5.4260 -4.7809 -4.3349 18 6 4.2296 -6.0878 -5.5601 19 6 6.4047 -6.6683 -4.5202 20 1 6.6609 -7.3990 -3.7674 21 6 7.2197 -6.4955 -5.6188 22 7 6.9081 -5.6053 -6.5354 23 14 8.7666 -7.5259 -5.8054 24 1 8.4458 -8.7703 -6.5497 25 1 9.7898 -6.7519 -6.5532 26 1 9.2940 -7.8748 -4.4618 27 6 2.6652 -3.3761 -0.6867 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8898 -0.5139 30 1 -0.3633 -0.8901 -0.5138 31 1 0.1918 -2.0923 1.2286 32 1 -0.4973 -4.4535 1.2330 33 1 0.8222 -6.1270 0.0037 34 1 3.0957 -6.5668 -1.0366 35 1 4.6007 -7.0887 -2.7473 36 1 3.9607 -7.1435 -5.5948 37 1 3.3272 -5.4864 -5.4511 38 1 4.7406 -5.8130 -6.4829 39 1 7.4813 -5.4841 -7.3084 40 1 3.5515 -3.0740 -1.2249 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155147794.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:07 Heat of formation + Delta-G solvation = 122.036235 kcal Electronic energy + Delta-G solvation = -25493.003956 eV Core-core repulsion = 21732.014100 eV Total energy + Delta-G solvation = -3760.989857 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.27055 -40.53905 -38.90229 -35.96482 -34.94689 -34.06776 -33.46688 -32.51077 -30.65586 -29.94754 -28.95356 -28.35339 -25.32060 -24.88827 -23.53091 -22.40180 -21.88872 -20.99317 -19.97021 -18.77766 -18.33557 -16.88930 -16.65264 -16.41929 -15.88415 -15.49240 -15.20516 -14.95177 -14.64584 -14.17940 -13.98461 -13.93325 -13.61805 -13.32472 -13.11917 -12.96824 -12.49672 -12.47279 -12.11059 -12.08338 -11.85890 -11.37092 -11.15710 -11.09004 -11.02326 -10.84806 -10.41887 -10.31024 -10.29098 -10.26363 -9.64288 -9.12160 -9.00002 -8.64277 -8.37666 -7.96936 -6.17996 -4.27902 0.30202 1.03535 1.33536 1.66147 2.15844 2.89335 3.21031 3.25310 3.28706 3.30797 3.69910 3.76181 4.15584 4.27212 4.49608 4.63514 4.69035 4.82005 4.86241 4.90964 5.02800 5.14886 5.15923 5.22399 5.26370 5.41693 5.58840 5.89810 5.97346 6.00583 6.13092 6.45725 6.69310 6.81577 6.87935 6.97793 7.09724 7.32648 7.54844 7.72146 7.88327 8.07705 8.34168 8.60210 8.73646 9.06278 9.39917 10.88094 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.017257 B = 0.003047 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.180483 B = 9186.897390 C =10180.561620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.248 3.752 3 N -0.334 5.334 4 N -0.039 5.039 5 N -0.069 5.069 6 N -0.324 5.324 7 C 0.141 3.859 8 C -0.146 4.146 9 C -0.078 4.078 10 C -0.143 4.143 11 C 0.206 3.794 12 N -0.694 5.694 13 C 0.690 3.310 14 O -0.578 6.578 15 N -0.714 5.714 16 C 0.280 3.720 17 H 0.050 0.950 18 C -0.148 4.148 19 C -0.536 4.536 20 H 0.062 0.938 21 C 0.067 3.933 22 N -0.882 5.882 23 Si 0.904 3.096 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.273 1.273 27 C -0.101 4.101 28 H 0.100 0.900 29 H 0.106 0.894 30 H 0.094 0.906 31 H 0.133 0.867 32 H 0.140 0.860 33 H 0.136 0.864 34 H 0.407 0.593 35 H 0.388 0.612 36 H 0.026 0.974 37 H 0.015 0.985 38 H 0.092 0.908 39 H 0.266 0.734 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.168 0.886 15.866 23.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.028 4.028 3 N -0.186 5.186 4 N -0.033 5.033 5 N -0.053 5.053 6 N -0.115 5.115 7 C 0.049 3.951 8 C -0.168 4.168 9 C -0.097 4.097 10 C -0.165 4.165 11 C 0.107 3.893 12 N -0.342 5.342 13 C 0.391 3.609 14 O -0.456 6.456 15 N -0.365 5.365 16 C 0.178 3.822 17 H 0.068 0.932 18 C -0.207 4.207 19 C -0.575 4.575 20 H 0.080 0.920 21 C -0.137 4.137 22 N -0.519 5.519 23 Si 0.731 3.269 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.198 1.198 27 C -0.124 4.124 28 H 0.119 0.881 29 H 0.124 0.876 30 H 0.113 0.887 31 H 0.151 0.849 32 H 0.158 0.842 33 H 0.153 0.847 34 H 0.243 0.757 35 H 0.220 0.780 36 H 0.046 0.954 37 H 0.034 0.966 38 H 0.110 0.890 39 H 0.076 0.924 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -15.810 2.664 15.096 22.022 hybrid contribution 0.374 -2.085 0.063 2.119 sum -15.436 0.580 15.159 21.642 Atomic orbital electron populations 1.20652 0.82226 1.06181 1.05056 1.25826 0.98223 0.82379 0.96380 1.74438 0.96425 1.24795 1.22896 1.78044 1.11258 1.04166 1.09869 1.82797 0.96909 1.04731 1.20896 1.48873 1.05811 1.06579 1.50211 1.17266 0.97338 0.79037 1.01459 1.20914 0.96861 0.97547 1.01478 1.20717 0.99497 0.91194 0.98321 1.21088 0.93439 1.01052 1.00940 1.17256 0.90589 0.88605 0.92803 1.42932 1.52672 1.13405 1.25222 1.16201 0.79688 0.85525 0.79528 1.90921 1.67134 1.21320 1.66193 1.45908 1.46384 1.15622 1.28544 1.18734 0.88963 0.97601 0.76886 0.93196 1.22111 0.97602 0.97950 1.03039 1.21175 1.06886 1.21951 1.07473 0.92010 1.24885 0.98099 0.95299 0.95374 1.69896 1.38035 1.33167 1.10796 0.86415 0.82306 0.79908 0.78279 1.20519 1.20986 1.19827 1.21111 1.01517 0.91485 0.98242 0.88140 0.87569 0.88698 0.84877 0.84222 0.84651 0.75679 0.77998 0.95434 0.96629 0.88993 0.92443 0.82720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 8.74 36.01 0.31 -0.19 16 2 C 0.25 3.03 7.97 -155.20 -1.24 1.79 16 3 N -0.33 -5.06 12.15 32.75 0.40 -4.66 16 4 N -0.04 -0.68 13.39 60.35 0.81 0.13 16 5 N -0.07 -1.21 13.75 60.35 0.83 -0.38 16 6 N -0.32 -4.64 3.78 -7.98 -0.03 -4.67 16 7 C 0.14 1.81 6.35 -83.59 -0.53 1.28 16 8 C -0.15 -1.25 8.41 -39.37 -0.33 -1.58 16 9 C -0.08 -0.55 10.03 -39.64 -0.40 -0.95 16 10 C -0.14 -1.25 9.96 -39.36 -0.39 -1.65 16 11 C 0.21 2.64 6.28 -83.71 -0.53 2.12 16 12 N -0.69 -9.40 5.35 -14.24 -0.08 -9.48 16 13 C 0.69 13.19 8.27 -86.92 -0.72 12.47 16 14 O -0.58 -13.54 13.69 5.29 0.07 -13.47 16 15 N -0.71 -14.10 5.07 -59.81 -0.30 -14.40 16 16 C 0.28 6.96 2.56 -69.08 -0.18 6.79 16 17 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 18 C -0.15 -3.62 9.26 37.16 0.34 -3.28 16 19 C -0.54 -13.92 8.73 -34.44 -0.30 -14.22 16 20 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 21 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 22 N -0.88 -24.66 11.32 55.43 0.63 -24.03 16 23 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 24 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 26 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 27 C -0.10 -1.53 8.42 -39.22 -0.33 -1.86 16 28 H 0.10 0.35 7.84 -51.93 -0.41 -0.06 16 29 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.50 7.03 -51.93 -0.37 0.13 16 31 H 0.13 0.75 6.27 -52.49 -0.33 0.42 16 32 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 33 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 34 H 0.41 3.92 8.84 -40.82 -0.36 3.56 16 35 H 0.39 6.38 8.56 -40.82 -0.35 6.03 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.09 2.46 6.07 -51.92 -0.32 2.14 16 39 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.16 2.98 6.41 -52.49 -0.34 2.65 16 LS Contribution 344.82 15.07 5.20 5.20 Total: -1.00 -34.63 344.82 -6.39 -41.02 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -4.51 Total: 6.94 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: -4.38 Total: 2.41 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: 2.25 Total: -57.49 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: 0.07 Total: -13.47 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.63 -6.39 -41.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155147794.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.056 kcal (2) G-P(sol) polarization free energy of solvation -34.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds