Wall clock time and date at job start Tue Mar 31 2020 11:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30739 * 126.35718 * 2 1 4 4 N 1.28433 * 110.64413 * 179.97438 * 3 2 1 5 5 N 1.28942 * 110.20106 * 359.73173 * 4 3 2 6 6 N 1.35062 * 126.36791 * 179.97438 * 2 1 3 7 7 C 1.40271 * 127.38555 * 359.97438 * 6 2 1 8 8 C 1.38886 * 120.02686 * 324.96896 * 7 6 2 9 9 C 1.38152 * 120.06925 * 180.02562 * 8 7 6 10 10 C 1.38173 * 120.13665 * 359.68866 * 9 8 7 11 11 C 1.38889 * 120.05805 * 0.58667 * 10 9 8 12 12 N 1.39951 * 120.03500 * 179.70258 * 11 10 9 13 13 C 1.34774 * 119.99660 * 146.42927 * 12 11 10 14 14 O 1.21588 * 120.00429 * 354.68140 * 13 12 11 15 15 N 1.34781 * 119.99815 * 174.68429 * 13 12 11 16 16 C 1.46502 * 119.99735 * 180.02562 * 15 13 12 17 17 H 1.09001 * 109.47595 * 34.99276 * 16 15 13 18 18 C 1.53001 * 109.46711 * 274.99692 * 16 15 13 19 19 C 1.50697 * 109.47072 * 155.00064 * 16 15 13 20 20 H 1.07997 * 120.00422 * 359.97438 * 19 16 15 21 21 C 1.37880 * 120.00038 * 180.02562 * 19 16 15 22 22 N 1.31514 * 120.00049 * 359.97438 * 21 19 16 23 23 Si 1.86801 * 120.00040 * 179.97438 * 21 19 16 24 24 H 1.48500 * 109.47239 * 89.99713 * 23 21 19 25 25 H 1.48504 * 109.47158 * 209.99353 * 23 21 19 26 26 H 1.48497 * 109.46989 * 329.99538 * 23 21 19 27 27 C 1.38672 * 120.02974 * 144.99434 * 7 6 2 28 28 H 1.09001 * 109.46928 * 269.99871 * 1 2 3 29 29 H 1.08993 * 109.47510 * 30.00641 * 1 2 3 30 30 H 1.09006 * 109.46606 * 150.00609 * 1 2 3 31 31 H 1.07995 * 119.96430 * 0.03072 * 8 7 6 32 32 H 1.08002 * 119.92714 * 179.97438 * 9 8 7 33 33 H 1.08007 * 119.97149 * 180.31956 * 10 9 8 34 34 H 0.97005 * 120.00131 * 326.42261 * 12 11 10 35 35 H 0.97000 * 119.99843 * 359.97438 * 15 13 12 36 36 H 1.08999 * 109.47277 * 299.99566 * 18 16 15 37 37 H 1.08996 * 109.47585 * 60.00108 * 18 16 15 38 38 H 1.09007 * 109.46934 * 180.02562 * 18 16 15 39 39 H 0.96994 * 119.99994 * 180.02562 * 22 21 19 40 40 H 1.08001 * 120.06775 * 359.95868 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2821 1.0529 0.0000 4 7 3.5184 0.7051 0.0005 5 7 3.6193 -0.5804 0.0066 6 7 2.3079 -1.0876 0.0005 7 6 1.9155 -2.4342 0.0016 8 6 0.7760 -2.8255 0.6925 9 6 0.3890 -4.1517 0.6946 10 6 1.1301 -5.0918 0.0045 11 6 2.2737 -4.7075 -0.6835 12 7 3.0275 -5.6611 -1.3772 13 6 3.6587 -5.3209 -2.5184 14 8 3.4958 -4.2151 -2.9969 15 7 4.4705 -6.2066 -3.1292 16 6 5.1570 -5.8366 -4.3694 17 1 5.4260 -4.7809 -4.3349 18 6 4.2296 -6.0878 -5.5601 19 6 6.4047 -6.6683 -4.5202 20 1 6.6609 -7.3990 -3.7674 21 6 7.2197 -6.4955 -5.6188 22 7 6.9081 -5.6053 -6.5354 23 14 8.7666 -7.5259 -5.8054 24 1 8.4458 -8.7703 -6.5497 25 1 9.7898 -6.7519 -6.5532 26 1 9.2940 -7.8748 -4.4618 27 6 2.6652 -3.3761 -0.6867 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8898 -0.5139 30 1 -0.3633 -0.8901 -0.5138 31 1 0.1918 -2.0923 1.2286 32 1 -0.4973 -4.4535 1.2330 33 1 0.8222 -6.1270 0.0037 34 1 3.0957 -6.5668 -1.0366 35 1 4.6007 -7.0887 -2.7473 36 1 3.9607 -7.1435 -5.5948 37 1 3.3272 -5.4864 -5.4511 38 1 4.7406 -5.8130 -6.4829 39 1 7.4813 -5.4841 -7.3084 40 1 3.5515 -3.0740 -1.2249 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155147794.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:06 Heat of formation + Delta-G solvation = 95.708767 kcal Electronic energy + Delta-G solvation = -25494.145601 eV Core-core repulsion = 21732.014100 eV Total energy + Delta-G solvation = -3762.131501 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.35854 -41.74721 -40.08242 -37.28548 -36.52682 -35.27438 -34.42549 -34.35346 -31.67551 -31.26903 -29.83680 -29.68632 -27.37885 -25.92376 -24.61239 -23.54767 -23.07075 -22.25189 -21.58058 -19.97189 -19.73758 -18.07346 -17.95454 -17.44656 -17.39769 -16.69221 -16.61534 -16.11838 -15.88638 -15.70379 -15.16389 -14.93289 -14.64922 -14.44288 -14.13024 -14.00684 -13.89806 -13.77502 -13.40176 -13.09391 -13.03098 -12.90020 -12.76950 -12.74409 -12.39012 -12.29643 -12.18578 -12.16389 -11.43262 -11.33233 -11.21661 -11.14136 -10.64960 -9.93527 -9.87939 -9.18902 -8.21396 -6.39309 -0.64965 0.17786 0.39668 0.71943 1.06633 1.42488 1.44182 1.54098 1.66544 2.05619 2.38711 2.63407 2.90504 3.09506 3.25337 3.39069 3.70287 3.83563 3.99152 4.10073 4.15936 4.28172 4.39378 4.55576 4.59208 4.63993 4.70062 4.87706 4.95389 5.03744 5.09554 5.18464 5.25164 5.28664 5.35536 5.49678 5.55034 5.60101 5.79423 5.88578 6.04775 6.18573 6.68605 7.15714 7.20876 7.29762 7.59297 8.85222 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.017257 B = 0.003047 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.180483 B = 9186.897390 C =10180.561620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.258 3.742 3 N -0.359 5.359 4 N -0.064 5.064 5 N -0.118 5.118 6 N -0.326 5.326 7 C 0.115 3.885 8 C -0.122 4.122 9 C -0.057 4.057 10 C -0.119 4.119 11 C 0.175 3.825 12 N -0.673 5.673 13 C 0.690 3.310 14 O -0.628 6.628 15 N -0.711 5.711 16 C 0.289 3.711 17 H -0.007 1.007 18 C -0.133 4.133 19 C -0.547 4.547 20 H 0.076 0.924 21 C 0.013 3.987 22 N -0.918 5.918 23 Si 0.975 3.025 24 H -0.268 1.268 25 H -0.289 1.289 26 H -0.264 1.264 27 C -0.137 4.137 28 H 0.141 0.859 29 H 0.119 0.881 30 H 0.111 0.889 31 H 0.173 0.827 32 H 0.197 0.803 33 H 0.174 0.826 34 H 0.428 0.572 35 H 0.406 0.594 36 H 0.045 0.955 37 H 0.010 0.990 38 H 0.066 0.934 39 H 0.266 0.734 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.786 -1.701 18.632 27.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.017 4.017 3 N -0.211 5.211 4 N -0.059 5.059 5 N -0.103 5.103 6 N -0.117 5.117 7 C 0.024 3.976 8 C -0.143 4.143 9 C -0.076 4.076 10 C -0.140 4.140 11 C 0.078 3.922 12 N -0.323 5.323 13 C 0.390 3.610 14 O -0.509 6.509 15 N -0.363 5.363 16 C 0.185 3.815 17 H 0.011 0.989 18 C -0.192 4.192 19 C -0.586 4.586 20 H 0.094 0.906 21 C -0.187 4.187 22 N -0.556 5.556 23 Si 0.799 3.201 24 H -0.193 1.193 25 H -0.215 1.215 26 H -0.188 1.188 27 C -0.160 4.160 28 H 0.159 0.841 29 H 0.138 0.862 30 H 0.129 0.871 31 H 0.190 0.810 32 H 0.214 0.786 33 H 0.192 0.808 34 H 0.268 0.732 35 H 0.242 0.758 36 H 0.064 0.936 37 H 0.029 0.971 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -19.470 0.019 17.940 26.475 hybrid contribution 1.307 -1.237 -0.695 1.930 sum -18.162 -1.219 17.245 25.075 Atomic orbital electron populations 1.21115 0.77458 1.07635 1.07958 1.26984 1.00214 0.80882 0.93614 1.74341 0.96128 1.26444 1.24220 1.77990 1.12756 1.04450 1.10660 1.82717 0.99675 1.04943 1.22954 1.48997 1.05008 1.07769 1.49936 1.17647 0.98990 0.77876 1.03094 1.21458 0.94475 0.99361 0.99049 1.21406 1.00051 0.89653 0.96484 1.21564 0.90835 1.03444 0.98207 1.17557 0.92562 0.87411 0.94675 1.42481 1.51843 1.14656 1.23332 1.16321 0.79561 0.84432 0.80658 1.90900 1.68624 1.23409 1.67967 1.45431 1.46588 1.16702 1.27592 1.18248 0.89729 0.94399 0.79140 0.98916 1.21908 0.96832 0.98743 1.01705 1.21529 1.07230 1.22012 1.07782 0.90551 1.25831 1.01392 0.96395 0.95063 1.70060 1.39334 1.34842 1.11401 0.85300 0.77955 0.78290 0.78524 1.19271 1.21461 1.18797 1.20829 1.01102 0.93786 1.00307 0.84090 0.86207 0.87078 0.80970 0.78642 0.80819 0.73219 0.75833 0.93621 0.97109 0.91536 0.92516 0.88557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 8.74 71.24 0.62 -0.09 16 2 C 0.26 6.13 7.97 138.05 1.10 7.23 16 3 N -0.36 -11.23 12.15 -50.29 -0.61 -11.84 16 4 N -0.06 -2.40 13.39 37.02 0.50 -1.91 16 5 N -0.12 -4.51 13.75 37.02 0.51 -4.00 16 6 N -0.33 -9.62 3.78 -179.17 -0.68 -10.30 16 7 C 0.12 2.89 6.35 38.05 0.24 3.14 16 8 C -0.12 -1.52 8.41 22.40 0.19 -1.33 16 9 C -0.06 -0.43 10.03 22.23 0.22 -0.21 16 10 C -0.12 -1.51 9.96 22.41 0.22 -1.29 16 11 C 0.17 4.33 6.28 38.13 0.24 4.57 16 12 N -0.67 -18.03 5.35 -317.22 -1.70 -19.73 16 13 C 0.69 27.63 8.27 179.05 1.48 29.11 16 14 O -0.63 -31.93 13.69 -3.99 -0.05 -31.99 16 15 N -0.71 -28.95 5.07 -461.40 -2.34 -31.29 16 16 C 0.29 15.09 2.56 44.24 0.11 15.20 16 17 H -0.01 -0.45 7.58 -2.39 -0.02 -0.47 16 18 C -0.13 -6.76 9.26 71.98 0.67 -6.09 16 19 C -0.55 -28.94 8.73 25.60 0.22 -28.71 16 20 H 0.08 3.72 7.74 -2.91 -0.02 3.70 16 21 C 0.01 0.72 5.30 84.66 0.45 1.17 16 22 N -0.92 -53.39 11.32 21.45 0.24 -53.15 16 23 Si 0.97 42.15 29.54 68.60 2.03 44.18 16 24 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 25 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 26 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 27 C -0.14 -4.41 8.42 22.50 0.19 -4.22 16 28 H 0.14 0.16 7.84 -2.39 -0.02 0.14 16 29 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.11 0.66 7.03 -2.38 -0.02 0.64 16 31 H 0.17 0.79 6.27 -2.91 -0.02 0.77 16 32 H 0.20 -0.46 8.06 -2.91 -0.02 -0.48 16 33 H 0.17 0.93 8.06 -2.91 -0.02 0.91 16 34 H 0.43 7.44 8.84 -92.70 -0.82 6.62 16 35 H 0.41 13.23 8.56 -92.71 -0.79 12.43 16 36 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.07 3.72 6.07 -2.38 -0.01 3.71 16 39 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 40 H 0.10 4.24 6.41 -2.91 -0.02 4.22 16 Total: -1.00 -87.90 344.82 3.36 -84.54 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -0.49 Total: 17.00 kcal Atomic # 6 Polarization: 12.51 SS G_CDS: 5.96 Total: 18.47 kcal Atomic # 7 Polarization: -128.13 SS G_CDS: -4.08 Total: -132.21 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -0.05 Total: -31.99 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -87.90 3.36 -84.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155147794.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.251 kcal (2) G-P(sol) polarization free energy of solvation -87.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds