Wall clock time and date at job start Tue Mar 31 2020 11:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53001 * 109.46956 * 2 1 4 4 C 1.53001 * 109.47174 * 239.99778 * 2 1 3 5 5 C 1.50703 * 109.47022 * 60.00032 * 4 2 1 6 6 H 1.07995 * 119.99882 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99843 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99804 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00085 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46853 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46944 * 119.99991 * 9 7 5 12 12 H 1.48499 * 109.47670 * 240.00212 * 9 7 5 13 13 C 1.53002 * 109.47036 * 119.99798 * 2 1 3 14 14 N 1.46501 * 109.46874 * 300.00025 * 13 2 1 15 15 C 1.39503 * 119.99807 * 179.97438 * 14 13 2 16 16 C 1.39066 * 119.93162 * 180.02562 * 15 14 13 17 17 C 1.37788 * 120.06339 * 180.02562 * 16 15 14 18 18 C 1.39626 * 119.93164 * 359.97438 * 17 16 15 19 19 C 1.47795 * 120.06451 * 180.02562 * 18 17 16 20 20 N 1.30263 * 125.47122 * 359.97155 * 19 18 17 21 21 C 1.31390 * 117.00404 * 179.77703 * 20 19 18 22 22 C 1.33640 * 115.85992 * 0.46209 * 21 20 19 23 23 S 1.76176 * 125.47648 * 180.02562 * 19 18 17 24 24 C 1.39626 * 119.86828 * 0.28034 * 18 17 16 25 25 C 1.37780 * 119.93072 * 359.46779 * 24 18 17 26 26 H 1.08993 * 109.47108 * 299.99721 * 1 2 3 27 27 H 1.08996 * 109.46865 * 60.00228 * 1 2 3 28 28 H 1.09005 * 109.46381 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46895 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.46720 * 299.99934 * 3 2 1 31 31 H 1.09001 * 109.47290 * 59.99625 * 3 2 1 32 32 H 1.09000 * 109.46591 * 179.97438 * 4 2 1 33 33 H 1.08997 * 109.47147 * 299.99887 * 4 2 1 34 34 H 0.97004 * 119.99802 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.47058 * 180.02562 * 13 2 1 36 36 H 1.08997 * 109.47261 * 60.00127 * 13 2 1 37 37 H 0.97001 * 120.00604 * 0.02562 * 14 13 2 38 38 H 1.07990 * 119.96895 * 359.97438 * 16 15 14 39 39 H 1.07997 * 120.02940 * 180.02562 * 17 16 15 40 40 H 1.08005 * 122.06493 * 180.28966 * 21 20 19 41 41 H 1.08002 * 125.88499 * 179.84829 * 22 21 20 42 42 H 1.08004 * 120.03179 * 179.72334 * 24 18 17 43 43 H 1.07998 * 119.96245 * 180.25642 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5378 -0.0109 -2.4797 6 1 0.9165 0.8669 -2.3806 7 6 1.8713 -0.4817 -3.7319 8 7 2.6274 -1.5510 -3.8525 9 14 1.2481 0.3984 -5.2572 10 1 0.4226 1.5649 -4.8530 11 1 2.4029 0.8659 -6.0654 12 1 0.4238 -0.5355 -6.0656 13 6 2.0401 -0.7212 1.2493 14 7 1.5517 -0.0305 2.4454 15 6 1.8882 -0.5074 3.7125 16 6 1.4234 0.1490 4.8469 17 6 1.7546 -0.3193 6.0997 18 6 2.5573 -1.4544 6.2294 19 6 2.9138 -1.9597 7.5718 20 7 2.5401 -1.4312 8.7022 21 6 2.9513 -2.0216 9.8017 22 6 3.7207 -3.1009 9.6309 23 16 3.9136 -3.3726 7.9002 24 6 3.0267 -2.1082 5.0885 25 6 2.6879 -1.6381 3.8385 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0278 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 3.1301 -0.7208 -1.2494 33 1 1.6768 -1.7489 -1.2492 34 1 2.8624 -1.8820 -4.7335 35 1 3.1301 -0.7208 1.2495 36 1 1.6768 -1.7489 1.2493 37 1 0.9937 0.7579 2.3564 38 1 0.8030 1.0271 4.7459 39 1 1.3930 0.1906 6.9804 40 1 2.6863 -1.6555 10.7826 41 1 4.1472 -3.7052 10.4179 42 1 3.6515 -2.9838 5.1858 43 1 3.0474 -2.1458 2.9556 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156174818.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:25 Heat of formation + Delta-G solvation = 53.179506 kcal Electronic energy + Delta-G solvation = -22646.144762 eV Core-core repulsion = 19396.169517 eV Total energy + Delta-G solvation = -3249.975245 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.90451 -39.16406 -37.51585 -34.56893 -32.43650 -31.08642 -31.01830 -28.65411 -27.07028 -26.56141 -26.25146 -24.74820 -23.22111 -22.46281 -21.58327 -19.59668 -18.44135 -18.24439 -17.16826 -16.41556 -16.15079 -15.48607 -14.97419 -14.66919 -14.61469 -14.43591 -14.14806 -13.81945 -13.54660 -13.19374 -13.11989 -13.00521 -12.84028 -12.25774 -12.12763 -12.04277 -11.59191 -11.31799 -11.07909 -11.03439 -10.87501 -10.71878 -10.44068 -10.40361 -10.28632 -9.89627 -9.83023 -9.55445 -9.27354 -9.01555 -8.98409 -8.93079 -8.41786 -7.17937 -6.05932 -4.06997 0.22594 1.16117 1.44366 1.56853 1.66025 2.80835 3.26492 3.34926 3.37156 3.58071 3.91010 3.95827 4.40849 4.82432 4.89292 4.97979 5.01580 5.28058 5.29955 5.34731 5.35357 5.50694 5.51471 5.67566 5.69315 5.89389 6.01072 6.07080 6.10121 6.17109 6.30915 6.31304 6.35388 6.49722 6.57861 6.58519 6.76979 6.97804 7.01257 7.04475 7.40785 7.55951 7.58453 7.68092 7.81939 7.92638 8.34780 8.97803 9.56622 11.05520 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.036096 B = 0.002126 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.514594 B =13164.920250 C =13744.062179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.071 4.071 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.126 3.874 14 N -0.727 5.727 15 C 0.250 3.750 16 C -0.210 4.210 17 C -0.014 4.014 18 C -0.118 4.118 19 C 0.155 3.845 20 N -0.487 5.487 21 C 0.046 3.954 22 C -0.268 4.268 23 S 0.065 5.935 24 C -0.038 4.038 25 C -0.201 4.201 26 H 0.029 0.971 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.029 0.971 32 H 0.018 0.982 33 H 0.018 0.982 34 H 0.260 0.740 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.401 0.599 38 H 0.125 0.875 39 H 0.130 0.870 40 H 0.171 0.829 41 H 0.174 0.826 42 H 0.121 0.879 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.671 -0.964 23.177 23.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.071 4.071 3 C -0.184 4.184 4 C -0.002 4.002 5 C -0.549 4.549 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.003 3.997 14 N -0.352 5.352 15 C 0.141 3.859 16 C -0.233 4.233 17 C -0.036 4.036 18 C -0.125 4.125 19 C -0.119 4.119 20 N -0.201 5.201 21 C -0.105 4.105 22 C -0.407 4.407 23 S 0.321 5.679 24 C -0.059 4.059 25 C -0.224 4.224 26 H 0.048 0.952 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.048 0.952 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.237 0.763 38 H 0.143 0.857 39 H 0.148 0.852 40 H 0.188 0.812 41 H 0.192 0.808 42 H 0.139 0.861 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.061 -1.509 22.299 22.375 hybrid contribution -0.580 0.820 -0.007 1.004 sum 0.481 -0.689 22.292 22.308 Atomic orbital electron populations 1.21758 0.95231 1.01152 1.00306 1.20873 0.95514 0.95878 0.94862 1.21757 1.00490 0.95895 1.00307 1.19101 0.96289 0.95192 0.89582 1.21211 1.31119 1.12097 0.90494 0.92214 1.25014 0.95302 0.95087 0.99141 1.69966 1.36990 1.23049 1.23390 0.86587 0.78631 0.79691 0.83386 1.19793 1.21111 1.21107 1.21714 0.98412 0.95963 0.83611 1.45204 1.55262 1.32231 1.02542 1.18134 0.90634 0.91455 0.85710 1.20538 1.08040 1.03741 0.91015 1.20879 0.92877 0.92877 0.96983 1.17453 1.07408 1.00449 0.87205 1.25987 0.96673 0.93688 0.95560 1.66612 1.24967 1.31327 0.97214 1.21630 0.97504 0.93619 0.97787 1.26855 1.09859 1.05293 0.98679 1.84996 1.50482 1.30714 1.01738 1.20845 0.96337 0.97572 0.91166 1.20575 1.05035 0.99081 0.97696 0.95166 0.91465 0.93385 0.93382 0.91471 0.95159 0.96378 0.96377 0.93071 0.92183 0.92183 0.76252 0.85736 0.85162 0.81170 0.80813 0.86149 0.85100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 8.05 37.16 0.30 -1.86 16 2 C -0.07 -1.26 0.54 -154.50 -0.08 -1.34 16 3 C -0.13 -2.15 8.05 37.16 0.30 -1.86 16 4 C 0.04 0.84 4.04 -27.88 -0.11 0.72 16 5 C -0.51 -13.20 7.65 -34.44 -0.26 -13.46 16 6 H 0.06 1.50 5.68 -52.49 -0.30 1.20 16 7 C 0.06 1.51 5.46 -17.82 -0.10 1.42 16 8 N -0.89 -25.74 13.29 55.43 0.74 -25.01 16 9 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 10 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.13 1.93 3.79 -4.04 -0.02 1.92 16 14 N -0.73 -9.52 5.13 -58.60 -0.30 -9.82 16 15 C 0.25 3.20 6.65 -83.75 -0.56 2.64 16 16 C -0.21 -2.45 9.87 -39.44 -0.39 -2.84 16 17 C -0.01 -0.16 9.67 -39.23 -0.38 -0.54 16 18 C -0.12 -1.46 5.87 -104.95 -0.62 -2.08 16 19 C 0.15 1.88 7.34 -14.31 -0.11 1.77 16 20 N -0.49 -6.00 10.14 -11.37 -0.12 -6.12 16 21 C 0.05 0.45 11.24 -19.35 -0.22 0.23 16 22 C -0.27 -2.32 11.35 29.12 0.33 -1.99 16 23 S 0.07 0.64 22.39 -107.50 -2.41 -1.76 16 24 C -0.04 -0.45 9.60 -39.23 -0.38 -0.82 16 25 C -0.20 -2.53 9.29 -39.44 -0.37 -2.90 16 26 H 0.03 0.42 6.86 -51.93 -0.36 0.07 16 27 H 0.07 1.24 6.62 -51.93 -0.34 0.90 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 1.24 6.62 -51.93 -0.34 0.90 16 31 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 35 H 0.06 0.94 7.94 -51.93 -0.41 0.52 16 36 H 0.06 0.94 7.94 -51.93 -0.41 0.52 16 37 H 0.40 4.89 6.17 -40.82 -0.25 4.63 16 38 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.13 1.45 7.81 -52.49 -0.41 1.04 16 40 H 0.17 1.18 8.06 -52.48 -0.42 0.75 16 41 H 0.17 1.00 8.06 -52.49 -0.42 0.58 16 42 H 0.12 1.22 7.29 -52.48 -0.38 0.84 16 43 H 0.13 1.61 6.71 -52.49 -0.35 1.26 16 LS Contribution 361.81 15.07 5.45 5.45 Total: -1.00 -28.79 361.81 -10.32 -39.10 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -6.01 Total: 3.31 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: -2.65 Total: -20.99 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 0.32 Total: -40.94 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 0.64 SS G_CDS: -2.41 Total: -1.76 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.79 -10.32 -39.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156174818.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.284 kcal (2) G-P(sol) polarization free energy of solvation -28.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds