Wall clock time and date at job start Tue Mar 31 2020 11:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53001 * 109.46956 * 2 1 4 4 C 1.53001 * 109.47174 * 239.99778 * 2 1 3 5 5 C 1.50703 * 109.47022 * 60.00032 * 4 2 1 6 6 H 1.07995 * 119.99882 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99843 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99804 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00085 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46853 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46944 * 119.99991 * 9 7 5 12 12 H 1.48499 * 109.47670 * 240.00212 * 9 7 5 13 13 C 1.53002 * 109.47036 * 119.99798 * 2 1 3 14 14 N 1.46501 * 109.46874 * 300.00025 * 13 2 1 15 15 C 1.39503 * 119.99807 * 179.97438 * 14 13 2 16 16 C 1.39066 * 119.93162 * 180.02562 * 15 14 13 17 17 C 1.37788 * 120.06339 * 180.02562 * 16 15 14 18 18 C 1.39626 * 119.93164 * 359.97438 * 17 16 15 19 19 C 1.47795 * 120.06451 * 180.02562 * 18 17 16 20 20 N 1.30263 * 125.47122 * 359.97155 * 19 18 17 21 21 C 1.31390 * 117.00404 * 179.77703 * 20 19 18 22 22 C 1.33640 * 115.85992 * 0.46209 * 21 20 19 23 23 S 1.76176 * 125.47648 * 180.02562 * 19 18 17 24 24 C 1.39626 * 119.86828 * 0.28034 * 18 17 16 25 25 C 1.37780 * 119.93072 * 359.46779 * 24 18 17 26 26 H 1.08993 * 109.47108 * 299.99721 * 1 2 3 27 27 H 1.08996 * 109.46865 * 60.00228 * 1 2 3 28 28 H 1.09005 * 109.46381 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46895 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.46720 * 299.99934 * 3 2 1 31 31 H 1.09001 * 109.47290 * 59.99625 * 3 2 1 32 32 H 1.09000 * 109.46591 * 179.97438 * 4 2 1 33 33 H 1.08997 * 109.47147 * 299.99887 * 4 2 1 34 34 H 0.97004 * 119.99802 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.47058 * 180.02562 * 13 2 1 36 36 H 1.08997 * 109.47261 * 60.00127 * 13 2 1 37 37 H 0.97001 * 120.00604 * 0.02562 * 14 13 2 38 38 H 1.07990 * 119.96895 * 359.97438 * 16 15 14 39 39 H 1.07997 * 120.02940 * 180.02562 * 17 16 15 40 40 H 1.08005 * 122.06493 * 180.28966 * 21 20 19 41 41 H 1.08002 * 125.88499 * 179.84829 * 22 21 20 42 42 H 1.08004 * 120.03179 * 179.72334 * 24 18 17 43 43 H 1.07998 * 119.96245 * 180.25642 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5378 -0.0109 -2.4797 6 1 0.9165 0.8669 -2.3806 7 6 1.8713 -0.4817 -3.7319 8 7 2.6274 -1.5510 -3.8525 9 14 1.2481 0.3984 -5.2572 10 1 0.4226 1.5649 -4.8530 11 1 2.4029 0.8659 -6.0654 12 1 0.4238 -0.5355 -6.0656 13 6 2.0401 -0.7212 1.2493 14 7 1.5517 -0.0305 2.4454 15 6 1.8882 -0.5074 3.7125 16 6 1.4234 0.1490 4.8469 17 6 1.7546 -0.3193 6.0997 18 6 2.5573 -1.4544 6.2294 19 6 2.9138 -1.9597 7.5718 20 7 2.5401 -1.4312 8.7022 21 6 2.9513 -2.0216 9.8017 22 6 3.7207 -3.1009 9.6309 23 16 3.9136 -3.3726 7.9002 24 6 3.0267 -2.1082 5.0885 25 6 2.6879 -1.6381 3.8385 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0278 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 3.1301 -0.7208 -1.2494 33 1 1.6768 -1.7489 -1.2492 34 1 2.8624 -1.8820 -4.7335 35 1 3.1301 -0.7208 1.2495 36 1 1.6768 -1.7489 1.2493 37 1 0.9937 0.7579 2.3564 38 1 0.8030 1.0271 4.7459 39 1 1.3930 0.1906 6.9804 40 1 2.6863 -1.6555 10.7826 41 1 4.1472 -3.7052 10.4179 42 1 3.6515 -2.9838 5.1858 43 1 3.0474 -2.1458 2.9556 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156174818.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:24 Heat of formation + Delta-G solvation = 38.793182 kcal Electronic energy + Delta-G solvation = -22646.768600 eV Core-core repulsion = 19396.169517 eV Total energy + Delta-G solvation = -3250.599083 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.80239 -40.08631 -38.81600 -35.83215 -34.28677 -32.05229 -31.92759 -29.71020 -28.78541 -27.95333 -27.44873 -25.75608 -24.76007 -23.52802 -22.59114 -20.47287 -19.64265 -19.19879 -18.35321 -18.26201 -17.01366 -16.62925 -16.40595 -15.80286 -15.78502 -15.42104 -15.24753 -14.93417 -14.53616 -14.40866 -14.36909 -14.23896 -13.96037 -13.90615 -13.52172 -12.96288 -12.90670 -12.67910 -12.62886 -12.34290 -12.33085 -12.23849 -11.97682 -11.84452 -11.63479 -11.23271 -10.96823 -10.82425 -10.65159 -10.51124 -10.36750 -9.92742 -9.77695 -8.14872 -8.14270 -6.20730 -0.59296 0.38260 0.52146 0.77833 0.82185 1.40572 1.42602 1.53362 2.00162 2.41455 2.53307 2.98274 3.16928 3.20554 3.91753 4.01476 4.04235 4.12550 4.18010 4.26873 4.40572 4.45502 4.56518 4.61933 4.65418 4.76639 4.77254 4.82828 4.98757 5.07920 5.13320 5.14420 5.17894 5.38215 5.42680 5.47436 5.51419 5.53969 5.57076 5.59785 5.82446 5.82973 5.91365 6.28968 6.39380 6.80053 6.84759 6.94687 7.46685 8.97991 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.036096 B = 0.002126 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.514594 B =13164.920250 C =13744.062179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.064 4.064 3 C -0.122 4.122 4 C 0.040 3.960 5 C -0.513 4.513 6 H 0.068 0.932 7 C -0.004 4.004 8 N -0.935 5.935 9 Si 0.954 3.046 10 H -0.260 1.260 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.142 3.858 14 N -0.724 5.724 15 C 0.237 3.763 16 C -0.202 4.202 17 C -0.022 4.022 18 C -0.122 4.122 19 C 0.124 3.876 20 N -0.505 5.505 21 C 0.026 3.974 22 C -0.251 4.251 23 S 0.075 5.925 24 C -0.042 4.042 25 C -0.211 4.211 26 H 0.064 0.936 27 H 0.049 0.951 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.049 0.951 31 H 0.064 0.936 32 H -0.010 1.010 33 H -0.010 1.010 34 H 0.259 0.741 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.408 0.592 38 H 0.145 0.855 39 H 0.136 0.864 40 H 0.197 0.803 41 H 0.206 0.794 42 H 0.132 0.868 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.036 -0.068 25.280 25.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.065 4.065 3 C -0.179 4.179 4 C 0.003 3.997 5 C -0.551 4.551 6 H 0.086 0.914 7 C -0.201 4.201 8 N -0.577 5.577 9 Si 0.780 3.220 10 H -0.184 1.184 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.018 3.982 14 N -0.351 5.351 15 C 0.128 3.872 16 C -0.225 4.225 17 C -0.044 4.044 18 C -0.128 4.128 19 C -0.150 4.150 20 N -0.219 5.219 21 C -0.125 4.125 22 C -0.390 4.390 23 S 0.330 5.670 24 C -0.063 4.063 25 C -0.234 4.234 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.009 0.991 33 H 0.009 0.991 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.245 0.755 38 H 0.163 0.837 39 H 0.154 0.846 40 H 0.213 0.787 41 H 0.223 0.777 42 H 0.150 0.850 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.412 -0.593 24.431 24.441 hybrid contribution -0.320 0.453 -0.462 0.722 sum 0.092 -0.140 23.968 23.969 Atomic orbital electron populations 1.21684 0.94158 1.00903 1.01146 1.20672 0.96267 0.96102 0.93417 1.21683 0.99962 0.95099 1.01146 1.18973 0.94450 0.94258 0.92042 1.21626 1.30188 1.11961 0.91311 0.91419 1.25889 0.95784 0.95916 1.02529 1.70102 1.38765 1.24836 1.23971 0.85553 0.78055 0.78814 0.79559 1.18410 1.21062 1.21056 1.21315 0.97894 0.95458 0.83546 1.44891 1.55922 1.32492 1.01824 1.18215 0.91334 0.91887 0.85716 1.20712 1.07509 1.03944 0.90362 1.21011 0.93080 0.93015 0.97334 1.17659 1.06999 1.00447 0.87697 1.26012 0.98331 0.95135 0.95492 1.66610 1.25293 1.32119 0.97904 1.22073 0.98061 0.94168 0.98180 1.27305 1.08397 1.04736 0.98568 1.84954 1.49561 1.29501 1.02975 1.20956 0.96527 0.98015 0.90795 1.20674 1.05366 0.99391 0.97967 0.91694 0.93146 0.94214 0.94214 0.93153 0.91687 0.99150 0.99147 0.93191 0.92866 0.92866 0.75485 0.83745 0.84603 0.78668 0.77660 0.84974 0.85443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.99 8.05 71.99 0.58 -3.41 16 2 C -0.06 -2.28 0.54 -52.18 -0.03 -2.31 16 3 C -0.12 -3.99 8.05 71.98 0.58 -3.41 16 4 C 0.04 1.95 4.04 29.85 0.12 2.07 16 5 C -0.51 -26.90 7.65 25.60 0.20 -26.71 16 6 H 0.07 3.39 5.68 -2.91 -0.02 3.37 16 7 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 8 N -0.94 -55.46 13.29 21.45 0.28 -55.18 16 9 Si 0.95 43.15 29.54 68.60 2.03 45.18 16 10 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 13 C 0.14 4.33 3.79 86.38 0.33 4.66 16 14 N -0.72 -17.86 5.13 -339.30 -1.74 -19.60 16 15 C 0.24 5.77 6.65 38.32 0.25 6.03 16 16 C -0.20 -4.38 9.87 22.36 0.22 -4.16 16 17 C -0.02 -0.50 9.67 22.50 0.22 -0.29 16 18 C -0.12 -2.91 5.87 -20.08 -0.12 -3.03 16 19 C 0.12 2.88 7.34 87.46 0.64 3.52 16 20 N -0.50 -11.75 10.14 -189.89 -1.93 -13.68 16 21 C 0.03 0.44 11.24 83.72 0.94 1.38 16 22 C -0.25 -3.67 11.35 66.78 0.76 -2.91 16 23 S 0.07 1.37 22.39 -56.49 -1.26 0.10 16 24 C -0.04 -0.97 9.60 22.50 0.22 -0.75 16 25 C -0.21 -5.25 9.29 22.36 0.21 -5.04 16 26 H 0.06 1.67 6.86 -2.39 -0.02 1.66 16 27 H 0.05 1.81 6.62 -2.39 -0.02 1.80 16 28 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 29 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.05 1.81 6.62 -2.38 -0.02 1.80 16 31 H 0.06 1.68 6.86 -2.39 -0.02 1.66 16 32 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 33 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 34 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 35 H 0.05 1.69 7.94 -2.39 -0.02 1.67 16 36 H 0.05 1.69 7.94 -2.39 -0.02 1.67 16 37 H 0.41 8.84 6.17 -92.71 -0.57 8.27 16 38 H 0.14 2.48 8.06 -2.92 -0.02 2.45 16 39 H 0.14 2.88 7.81 -2.91 -0.02 2.86 16 40 H 0.20 2.18 8.06 -2.91 -0.02 2.16 16 41 H 0.21 1.56 8.06 -2.91 -0.02 1.54 16 42 H 0.13 2.62 7.29 -2.91 -0.02 2.60 16 43 H 0.13 3.18 6.71 -2.91 -0.02 3.17 16 Total: -1.00 -63.18 361.81 3.41 -59.78 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: 0.45 Total: 17.54 kcal Atomic # 6 Polarization: -39.71 SS G_CDS: 5.58 Total: -34.13 kcal Atomic # 7 Polarization: -85.08 SS G_CDS: -3.38 Total: -88.46 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -1.26 Total: 0.10 kcal Total: -63.18 3.41 -59.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156174818.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.568 kcal (2) G-P(sol) polarization free energy of solvation -63.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds