Wall clock time and date at job start Tue Mar 31 2020 10:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38170 * 119.96846 * 2 1 4 4 C 1.38152 * 120.13534 * 180.02562 * 3 2 1 5 5 C 1.38881 * 120.07344 * 359.97438 * 4 3 2 6 6 N 1.40267 * 120.03161 * 179.97438 * 5 4 3 7 7 C 1.35070 * 127.38526 * 4.70370 * 6 5 4 8 8 N 1.30738 * 107.27184 * 179.84395 * 7 6 5 9 9 N 1.28428 * 110.64696 * 0.44548 * 8 7 6 10 10 N 1.28946 * 110.20064 * 359.71936 * 9 8 7 11 11 C 1.38684 * 119.93957 * 0.02562 * 5 4 3 12 12 C 1.38767 * 119.86560 * 359.97438 * 11 5 4 13 13 N 1.39949 * 120.03675 * 180.02562 * 12 11 5 14 14 C 1.34769 * 120.00217 * 24.81934 * 13 12 11 15 15 O 1.21595 * 120.00156 * 5.62328 * 14 13 12 16 16 N 1.34774 * 120.00291 * 185.62030 * 14 13 12 17 17 C 1.46504 * 120.00203 * 180.02562 * 16 14 13 18 18 H 1.09000 * 109.46930 * 325.00598 * 17 16 14 19 19 C 1.52998 * 109.46726 * 85.00303 * 17 16 14 20 20 C 1.50694 * 109.47274 * 205.00246 * 17 16 14 21 21 H 1.08003 * 120.00396 * 0.02562 * 20 17 16 22 22 C 1.37877 * 120.00257 * 180.02562 * 20 17 16 23 23 N 1.31518 * 119.99776 * 359.97438 * 22 20 17 24 24 Si 1.86799 * 120.00403 * 179.97438 * 22 20 17 25 25 H 1.48505 * 109.46839 * 60.00246 * 24 22 20 26 26 H 1.48497 * 109.47393 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.46971 * 300.00405 * 24 22 20 28 28 H 1.09000 * 109.46998 * 90.00343 * 1 2 3 29 29 H 1.09003 * 109.46865 * 210.00125 * 1 2 3 30 30 H 1.08993 * 109.47059 * 330.00088 * 1 2 3 31 31 H 1.08007 * 119.93532 * 359.97438 * 3 2 1 32 32 H 1.07996 * 119.96427 * 179.71874 * 4 3 2 33 33 H 1.07995 * 126.36591 * 359.96663 * 7 6 5 34 34 H 1.07997 * 120.06289 * 179.97438 * 11 5 4 35 35 H 0.97007 * 119.99900 * 204.83008 * 13 12 11 36 36 H 0.97004 * 119.99855 * 0.02562 * 16 14 13 37 37 H 1.09002 * 109.47317 * 299.99712 * 19 17 16 38 38 H 1.09000 * 109.47175 * 60.00445 * 19 17 16 39 39 H 1.09005 * 109.46814 * 179.97438 * 19 17 16 40 40 H 0.96997 * 119.99857 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1973 1.1970 0.0000 4 6 3.5788 1.2010 -0.0005 5 6 4.2782 0.0012 -0.0005 6 7 5.6809 0.0063 -0.0016 7 6 6.4972 1.0789 0.0853 8 7 7.7264 0.6350 0.0510 9 7 7.7430 -0.6443 -0.0609 10 7 6.5387 -1.1035 -0.0996 11 6 3.5886 -1.2020 -0.0005 12 6 2.2009 -1.2031 0.0000 13 7 1.5013 -2.4152 0.0005 14 6 2.0821 -3.5283 0.4905 15 8 3.1724 -3.4605 1.0247 16 7 1.4546 -4.7167 0.3884 17 6 2.0858 -5.9265 0.9215 18 1 3.1652 -5.8639 0.7840 19 6 1.7681 -6.0526 2.4128 20 6 1.5554 -7.1333 0.1912 21 1 0.8219 -7.0113 -0.5921 22 6 2.0066 -8.3932 0.5228 23 7 2.9002 -8.5418 1.4763 24 14 1.3487 -9.8892 -0.3820 25 1 1.6571 -9.7673 -1.8295 26 1 1.9876 -11.1156 0.1592 27 1 -0.1220 -9.9738 -0.1945 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5138 31 1 1.6557 2.1314 -0.0004 32 1 4.1154 2.1382 -0.0051 33 1 6.1913 2.1112 0.1696 34 1 4.1305 -2.1362 -0.0010 35 1 0.5984 -2.4543 -0.3519 36 1 0.5850 -4.7709 -0.0380 37 1 2.1517 -5.1798 2.9411 38 1 0.6886 -6.1152 2.5503 39 1 2.2373 -6.9530 2.8094 40 1 3.2173 -9.4282 1.7099 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170707193.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:03 Heat of formation + Delta-G solvation = 125.216216 kcal Electronic energy + Delta-G solvation = -25580.505705 eV Core-core repulsion = 21819.653743 eV Total energy + Delta-G solvation = -3760.851962 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.24992 -40.72018 -38.93893 -36.11556 -35.05654 -34.06581 -32.57107 -32.34927 -31.92269 -30.21752 -28.54725 -27.29177 -25.31040 -24.36149 -24.15207 -22.48828 -21.69392 -21.03461 -19.96961 -18.97790 -18.33182 -16.82879 -16.66716 -16.16156 -15.83570 -15.64793 -15.50998 -14.94358 -14.78081 -14.22819 -14.02866 -13.84822 -13.45986 -13.23883 -13.02498 -12.73748 -12.52951 -12.48157 -12.00985 -11.86471 -11.75389 -11.46399 -11.14500 -11.09162 -11.02356 -10.84286 -10.58046 -10.44454 -10.31375 -10.28101 -9.55263 -9.12377 -8.75915 -8.62258 -8.28150 -7.91828 -6.16901 -4.27041 0.22242 1.09189 1.49239 1.67978 2.18083 2.89570 3.22692 3.28784 3.29055 3.29806 3.77851 3.89836 4.10351 4.28053 4.53000 4.60550 4.67198 4.70751 4.86131 5.03388 5.04411 5.15760 5.27406 5.30268 5.43981 5.59486 5.66752 5.89241 6.01180 6.07528 6.21958 6.46193 6.70482 6.85059 6.89615 6.98736 7.10678 7.33725 7.55206 7.72903 7.88788 8.08799 8.32290 8.59872 8.73775 9.05852 9.40595 10.89066 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.014289 B = 0.003353 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.017589 B = 8347.896135 C = 9866.962588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.121 4.121 3 C -0.074 4.074 4 C -0.150 4.150 5 C 0.140 3.860 6 N -0.320 5.320 7 C 0.219 3.781 8 N -0.335 5.335 9 N -0.042 5.042 10 N -0.058 5.058 11 C -0.115 4.115 12 C 0.210 3.790 13 N -0.688 5.688 14 C 0.689 3.311 15 O -0.573 6.573 16 N -0.713 5.713 17 C 0.280 3.720 18 H 0.052 0.948 19 C -0.148 4.148 20 C -0.537 4.537 21 H 0.061 0.939 22 C 0.068 3.932 23 N -0.881 5.881 24 Si 0.903 3.097 25 H -0.276 1.276 26 H -0.285 1.285 27 H -0.276 1.276 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.139 0.861 32 H 0.132 0.868 33 H 0.237 0.763 34 H 0.173 0.827 35 H 0.407 0.593 36 H 0.387 0.613 37 H 0.015 0.985 38 H 0.026 0.974 39 H 0.092 0.908 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.145 22.151 -3.905 23.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.125 4.125 3 C -0.094 4.094 4 C -0.172 4.172 5 C 0.048 3.952 6 N -0.110 5.110 7 C -0.078 4.078 8 N -0.184 5.184 9 N -0.037 5.037 10 N -0.044 5.044 11 C -0.138 4.138 12 C 0.110 3.890 13 N -0.335 5.335 14 C 0.389 3.611 15 O -0.450 6.450 16 N -0.364 5.364 17 C 0.178 3.822 18 H 0.069 0.931 19 C -0.207 4.207 20 C -0.576 4.576 21 H 0.079 0.921 22 C -0.136 4.136 23 N -0.518 5.518 24 Si 0.731 3.269 25 H -0.201 1.201 26 H -0.211 1.211 27 H -0.202 1.202 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.157 0.843 32 H 0.150 0.850 33 H 0.253 0.747 34 H 0.190 0.810 35 H 0.243 0.757 36 H 0.220 0.780 37 H 0.034 0.966 38 H 0.045 0.955 39 H 0.110 0.890 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.963 20.830 -3.372 21.470 hybrid contribution -2.023 -0.287 -0.688 2.157 sum -5.986 20.542 -4.060 21.779 Atomic orbital electron populations 1.20748 0.90335 1.03471 1.02600 1.19749 0.96655 0.91447 1.04658 1.20560 0.92420 0.97382 0.98994 1.20664 0.94751 0.95311 1.06512 1.17351 0.76744 0.95477 1.05668 1.49083 1.07285 1.06138 1.48487 1.27350 0.86179 0.96735 0.97582 1.74447 1.18639 1.03824 1.21494 1.78118 1.12799 1.02608 1.10149 1.82901 0.94485 1.07222 1.19749 1.21347 0.93296 0.98773 1.00336 1.17112 0.90206 0.84838 0.96818 1.42962 1.18750 1.06705 1.65092 1.16227 0.84697 0.80544 0.79643 1.90891 1.20473 1.84745 1.48871 1.45929 1.22601 1.06485 1.61383 1.18742 0.94588 0.78334 0.90511 0.93065 1.22111 0.98989 1.01284 0.98325 1.21132 1.25888 0.90706 1.19865 0.92092 1.24877 0.94728 0.98960 0.95035 1.69889 1.29262 1.23594 1.29074 0.86480 0.78973 0.81563 0.79909 1.20135 1.21057 1.20173 0.90778 0.91347 0.90780 0.84333 0.85047 0.74663 0.81035 0.75710 0.78049 0.96591 0.95474 0.88974 0.92378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 9.44 36.01 0.34 -0.40 16 2 C -0.12 -1.13 5.90 -104.40 -0.62 -1.74 16 3 C -0.07 -0.56 9.69 -39.64 -0.38 -0.94 16 4 C -0.15 -1.25 9.49 -39.38 -0.37 -1.62 16 5 C 0.14 1.76 6.69 -83.59 -0.56 1.20 16 6 N -0.32 -4.34 3.85 -11.76 -0.05 -4.38 16 7 C 0.22 2.28 12.15 -90.15 -1.10 1.19 16 8 N -0.34 -4.72 12.15 29.64 0.36 -4.36 16 9 N -0.04 -0.71 13.39 60.35 0.81 0.10 16 10 N -0.06 -1.02 13.34 60.35 0.81 -0.21 16 11 C -0.11 -1.77 8.36 -39.22 -0.33 -2.10 16 12 C 0.21 2.76 6.41 -83.72 -0.54 2.22 16 13 N -0.69 -9.42 4.98 -14.24 -0.07 -9.49 16 14 C 0.69 13.11 8.33 -86.93 -0.72 12.39 16 15 O -0.57 -13.30 13.17 5.28 0.07 -13.24 16 16 N -0.71 -14.01 5.07 -59.82 -0.30 -14.31 16 17 C 0.28 6.93 2.56 -69.08 -0.18 6.76 16 18 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 19 C -0.15 -3.62 9.26 37.16 0.34 -3.28 16 20 C -0.54 -13.88 8.73 -34.44 -0.30 -14.18 16 21 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 22 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 23 N -0.88 -24.59 11.32 55.43 0.63 -23.96 16 24 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 25 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 26 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.47 6.98 -51.93 -0.36 0.11 16 30 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 31 H 0.14 0.59 8.06 -52.48 -0.42 0.16 16 32 H 0.13 0.60 6.90 -52.49 -0.36 0.24 16 33 H 0.24 0.96 7.21 -52.49 -0.38 0.58 16 34 H 0.17 3.35 5.51 -52.49 -0.29 3.07 16 35 H 0.41 4.06 7.41 -40.82 -0.30 3.76 16 36 H 0.39 6.33 8.56 -40.82 -0.35 5.98 16 37 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 40 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 343.28 15.07 5.17 5.17 Total: -1.00 -34.16 343.28 -6.51 -40.67 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -4.40 Total: 7.51 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: -4.50 Total: 1.19 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: 2.18 Total: -56.62 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.07 Total: -13.24 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.16 -6.51 -40.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170707193.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.882 kcal (2) G-P(sol) polarization free energy of solvation -34.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds