Wall clock time and date at job start Tue Mar 31 2020 10:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38170 * 119.96846 * 2 1 4 4 C 1.38152 * 120.13534 * 180.02562 * 3 2 1 5 5 C 1.38881 * 120.07344 * 359.97438 * 4 3 2 6 6 N 1.40267 * 120.03161 * 179.97438 * 5 4 3 7 7 C 1.35070 * 127.38526 * 4.70370 * 6 5 4 8 8 N 1.30738 * 107.27184 * 179.84395 * 7 6 5 9 9 N 1.28428 * 110.64696 * 0.44548 * 8 7 6 10 10 N 1.28946 * 110.20064 * 359.71936 * 9 8 7 11 11 C 1.38684 * 119.93957 * 0.02562 * 5 4 3 12 12 C 1.38767 * 119.86560 * 359.97438 * 11 5 4 13 13 N 1.39949 * 120.03675 * 180.02562 * 12 11 5 14 14 C 1.34769 * 120.00217 * 24.81934 * 13 12 11 15 15 O 1.21595 * 120.00156 * 5.62328 * 14 13 12 16 16 N 1.34774 * 120.00291 * 185.62030 * 14 13 12 17 17 C 1.46504 * 120.00203 * 180.02562 * 16 14 13 18 18 H 1.09000 * 109.46930 * 325.00598 * 17 16 14 19 19 C 1.52998 * 109.46726 * 85.00303 * 17 16 14 20 20 C 1.50694 * 109.47274 * 205.00246 * 17 16 14 21 21 H 1.08003 * 120.00396 * 0.02562 * 20 17 16 22 22 C 1.37877 * 120.00257 * 180.02562 * 20 17 16 23 23 N 1.31518 * 119.99776 * 359.97438 * 22 20 17 24 24 Si 1.86799 * 120.00403 * 179.97438 * 22 20 17 25 25 H 1.48505 * 109.46839 * 60.00246 * 24 22 20 26 26 H 1.48497 * 109.47393 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.46971 * 300.00405 * 24 22 20 28 28 H 1.09000 * 109.46998 * 90.00343 * 1 2 3 29 29 H 1.09003 * 109.46865 * 210.00125 * 1 2 3 30 30 H 1.08993 * 109.47059 * 330.00088 * 1 2 3 31 31 H 1.08007 * 119.93532 * 359.97438 * 3 2 1 32 32 H 1.07996 * 119.96427 * 179.71874 * 4 3 2 33 33 H 1.07995 * 126.36591 * 359.96663 * 7 6 5 34 34 H 1.07997 * 120.06289 * 179.97438 * 11 5 4 35 35 H 0.97007 * 119.99900 * 204.83008 * 13 12 11 36 36 H 0.97004 * 119.99855 * 0.02562 * 16 14 13 37 37 H 1.09002 * 109.47317 * 299.99712 * 19 17 16 38 38 H 1.09000 * 109.47175 * 60.00445 * 19 17 16 39 39 H 1.09005 * 109.46814 * 179.97438 * 19 17 16 40 40 H 0.96997 * 119.99857 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1973 1.1970 0.0000 4 6 3.5788 1.2010 -0.0005 5 6 4.2782 0.0012 -0.0005 6 7 5.6809 0.0063 -0.0016 7 6 6.4972 1.0789 0.0853 8 7 7.7264 0.6350 0.0510 9 7 7.7430 -0.6443 -0.0609 10 7 6.5387 -1.1035 -0.0996 11 6 3.5886 -1.2020 -0.0005 12 6 2.2009 -1.2031 0.0000 13 7 1.5013 -2.4152 0.0005 14 6 2.0821 -3.5283 0.4905 15 8 3.1724 -3.4605 1.0247 16 7 1.4546 -4.7167 0.3884 17 6 2.0858 -5.9265 0.9215 18 1 3.1652 -5.8639 0.7840 19 6 1.7681 -6.0526 2.4128 20 6 1.5554 -7.1333 0.1912 21 1 0.8219 -7.0113 -0.5921 22 6 2.0066 -8.3932 0.5228 23 7 2.9002 -8.5418 1.4763 24 14 1.3487 -9.8892 -0.3820 25 1 1.6571 -9.7673 -1.8295 26 1 1.9876 -11.1156 0.1592 27 1 -0.1220 -9.9738 -0.1945 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5138 31 1 1.6557 2.1314 -0.0004 32 1 4.1154 2.1382 -0.0051 33 1 6.1913 2.1112 0.1696 34 1 4.1305 -2.1362 -0.0010 35 1 0.5984 -2.4543 -0.3519 36 1 0.5850 -4.7709 -0.0380 37 1 2.1517 -5.1798 2.9411 38 1 0.6886 -6.1152 2.5503 39 1 2.2373 -6.9530 2.8094 40 1 3.2173 -9.4282 1.7099 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170707193.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:02 Heat of formation + Delta-G solvation = 100.246553 kcal Electronic energy + Delta-G solvation = -25581.588471 eV Core-core repulsion = 21819.653743 eV Total energy + Delta-G solvation = -3761.934728 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.29202 -41.88372 -40.13852 -37.32016 -36.66843 -35.27599 -34.37637 -33.44730 -32.74723 -31.52591 -30.04470 -28.12081 -27.36712 -25.35761 -25.10243 -23.78189 -22.82262 -22.19809 -21.57870 -20.05417 -19.78017 -18.13175 -17.72326 -17.63848 -17.12314 -16.78676 -16.55432 -16.36786 -16.01215 -15.67370 -15.15032 -14.88977 -14.63660 -14.43989 -14.24381 -13.82686 -13.80364 -13.70271 -13.22875 -13.01932 -12.97798 -12.80240 -12.70746 -12.46710 -12.41678 -12.27990 -12.17483 -12.12107 -11.67099 -11.45845 -11.15104 -11.08751 -10.63011 -9.92339 -9.63515 -9.02608 -8.19883 -6.38094 -0.68892 0.23546 0.56340 0.77769 1.17846 1.43327 1.46259 1.53764 1.65539 2.06816 2.39857 2.69083 3.02400 3.10934 3.32702 3.41317 3.79489 3.84257 3.93087 4.00636 4.19862 4.31942 4.39281 4.61230 4.71962 4.80739 4.88299 4.90755 5.03445 5.05422 5.19072 5.23470 5.31457 5.37308 5.39586 5.51504 5.56141 5.61859 5.80830 5.91976 6.05382 6.18257 6.69416 7.14152 7.25371 7.30727 7.59014 8.86497 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.014289 B = 0.003353 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.017589 B = 8347.896135 C = 9866.962588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.102 4.102 3 C -0.062 4.062 4 C -0.121 4.121 5 C 0.116 3.884 6 N -0.321 5.321 7 C 0.243 3.757 8 N -0.359 5.359 9 N -0.068 5.068 10 N -0.117 5.117 11 C -0.153 4.153 12 C 0.174 3.826 13 N -0.669 5.669 14 C 0.688 3.312 15 O -0.621 6.621 16 N -0.710 5.710 17 C 0.289 3.711 18 H -0.005 1.005 19 C -0.133 4.133 20 C -0.548 4.548 21 H 0.077 0.923 22 C 0.014 3.986 23 N -0.918 5.918 24 Si 0.975 3.025 25 H -0.272 1.272 26 H -0.288 1.288 27 H -0.260 1.260 28 H 0.094 0.906 29 H 0.060 0.940 30 H 0.101 0.899 31 H 0.192 0.808 32 H 0.184 0.816 33 H 0.305 0.695 34 H 0.116 0.884 35 H 0.425 0.575 36 H 0.405 0.595 37 H 0.008 0.992 38 H 0.044 0.956 39 H 0.066 0.934 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.572 26.330 -4.983 28.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.106 4.106 3 C -0.081 4.081 4 C -0.143 4.143 5 C 0.023 3.977 6 N -0.111 5.111 7 C -0.051 4.051 8 N -0.209 5.209 9 N -0.063 5.063 10 N -0.103 5.103 11 C -0.176 4.176 12 C 0.077 3.923 13 N -0.317 5.317 14 C 0.388 3.612 15 O -0.502 6.502 16 N -0.363 5.363 17 C 0.185 3.815 18 H 0.013 0.987 19 C -0.192 4.192 20 C -0.586 4.586 21 H 0.095 0.905 22 C -0.186 4.186 23 N -0.556 5.556 24 Si 0.799 3.201 25 H -0.197 1.197 26 H -0.213 1.213 27 H -0.185 1.185 28 H 0.112 0.888 29 H 0.079 0.921 30 H 0.120 0.880 31 H 0.209 0.791 32 H 0.202 0.798 33 H 0.320 0.680 34 H 0.134 0.866 35 H 0.265 0.735 36 H 0.241 0.759 37 H 0.028 0.972 38 H 0.063 0.937 39 H 0.085 0.915 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.460 25.073 -4.489 26.542 hybrid contribution -0.985 -1.330 -0.357 1.693 sum -8.445 23.743 -4.846 25.662 Atomic orbital electron populations 1.20894 0.87788 1.04492 1.04167 1.20201 0.98412 0.90310 1.01675 1.21239 0.92140 0.98425 0.96276 1.21310 0.95325 0.95168 1.02455 1.17697 0.76189 0.96224 1.07541 1.49165 1.07801 1.05956 1.48182 1.28582 0.84434 0.98141 0.93989 1.74339 1.20972 1.02908 1.22641 1.78088 1.13137 1.04157 1.10938 1.82875 0.95263 1.09899 1.22262 1.21053 0.94626 0.98148 1.03788 1.17382 0.89619 0.85638 0.99660 1.42503 1.19277 1.05599 1.64344 1.16344 0.84007 0.81451 0.79359 1.90887 1.22712 1.85673 1.50894 1.45447 1.23258 1.05630 1.61923 1.18251 0.91806 0.80380 0.91045 0.98724 1.21911 0.99624 0.99657 0.98005 1.21493 1.25973 0.91034 1.20131 0.90519 1.25830 0.94843 1.02208 0.95749 1.70060 1.30668 1.24147 1.30730 0.85355 0.78947 0.77340 0.78435 1.19681 1.21315 1.18471 0.88758 0.92109 0.88050 0.79071 0.79831 0.67990 0.86603 0.73503 0.75918 0.97242 0.93693 0.91499 0.92518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 9.44 71.24 0.67 -0.26 16 2 C -0.10 -1.52 5.90 -19.72 -0.12 -1.64 16 3 C -0.06 -0.55 9.69 22.23 0.22 -0.33 16 4 C -0.12 -1.39 9.49 22.40 0.21 -1.17 16 5 C 0.12 2.80 6.69 38.05 0.25 3.05 16 6 N -0.32 -8.71 3.85 -191.11 -0.74 -9.44 16 7 C 0.24 4.51 12.15 180.18 2.19 6.70 16 8 N -0.36 -10.05 12.15 -60.13 -0.73 -10.78 16 9 N -0.07 -2.47 13.39 37.02 0.50 -1.98 16 10 N -0.12 -4.45 13.34 37.02 0.49 -3.96 16 11 C -0.15 -5.00 8.36 22.50 0.19 -4.81 16 12 C 0.17 4.55 6.41 38.13 0.24 4.79 16 13 N -0.67 -18.64 4.98 -317.24 -1.58 -20.22 16 14 C 0.69 27.93 8.33 179.06 1.49 29.42 16 15 O -0.62 -31.82 13.17 -4.01 -0.05 -31.87 16 16 N -0.71 -29.14 5.07 -461.42 -2.34 -31.48 16 17 C 0.29 15.16 2.56 44.24 0.11 15.27 16 18 H -0.01 -0.33 7.58 -2.39 -0.02 -0.34 16 19 C -0.13 -6.83 9.26 71.98 0.67 -6.16 16 20 C -0.55 -28.97 8.73 25.60 0.22 -28.74 16 21 H 0.08 3.72 7.74 -2.91 -0.02 3.69 16 22 C 0.01 0.75 5.30 84.65 0.45 1.20 16 23 N -0.92 -53.49 11.32 21.45 0.24 -53.25 16 24 Si 0.97 42.06 29.54 68.60 2.03 44.08 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 26 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 27 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 28 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.06 0.62 6.98 -2.39 -0.02 0.60 16 30 H 0.10 0.34 8.08 -2.39 -0.02 0.32 16 31 H 0.19 -0.13 8.06 -2.91 -0.02 -0.16 16 32 H 0.18 0.16 6.90 -2.91 -0.02 0.14 16 33 H 0.31 0.58 7.21 -2.91 -0.02 0.56 16 34 H 0.12 5.16 5.51 -2.91 -0.02 5.14 16 35 H 0.43 8.11 7.41 -92.70 -0.69 7.42 16 36 H 0.41 13.33 8.56 -92.71 -0.79 12.54 16 37 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.07 3.77 6.07 -2.38 -0.01 3.76 16 40 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -87.57 343.28 4.26 -83.31 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -0.36 Total: 18.27 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: 6.81 Total: 17.31 kcal Atomic # 7 Polarization: -126.96 SS G_CDS: -4.16 Total: -131.11 kcal Atomic # 8 Polarization: -31.82 SS G_CDS: -0.05 Total: -31.87 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.08 kcal Total: -87.57 4.26 -83.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170707193.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.557 kcal (2) G-P(sol) polarization free energy of solvation -87.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds