Wall clock time and date at job start Tue Mar 31 2020 10:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38360 * 119.85709 * 2 1 4 4 C 1.37962 * 120.14003 * 180.02562 * 3 2 1 5 5 C 1.39549 * 119.85793 * 359.97041 * 4 3 2 6 6 C 1.47877 * 120.14089 * 179.97438 * 5 4 3 7 7 N 1.30223 * 125.46909 * 180.27440 * 6 5 4 8 8 C 1.31302 * 117.03877 * 180.22340 * 7 6 5 9 9 C 1.50698 * 122.07684 * 179.75479 * 8 7 6 10 10 N 1.46905 * 109.47194 * 274.71759 * 9 8 7 11 11 C 1.46902 * 110.99800 * 180.02562 * 10 9 8 12 12 C 1.53006 * 109.46626 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.46623 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.46953 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99816 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00344 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99769 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00300 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46691 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46740 * 119.99592 * 18 16 14 21 21 H 1.48497 * 109.47025 * 239.99950 * 18 16 14 22 22 C 1.33723 * 115.84651 * 359.48993 * 8 7 6 23 23 S 1.76169 * 125.47290 * 359.97438 * 6 5 4 24 24 C 1.39550 * 119.71578 * 0.25763 * 5 4 3 25 25 C 1.37958 * 119.85355 * 359.49376 * 24 5 4 26 26 H 1.09004 * 109.47160 * 89.99664 * 1 2 3 27 27 H 1.08997 * 109.47196 * 209.99943 * 1 2 3 28 28 H 1.09003 * 109.46990 * 330.00233 * 1 2 3 29 29 H 1.07994 * 119.92593 * 359.97438 * 3 2 1 30 30 H 1.08005 * 120.06944 * 179.97438 * 4 3 2 31 31 H 1.09002 * 109.47213 * 154.71698 * 9 8 7 32 32 H 1.09001 * 109.47086 * 34.71453 * 9 8 7 33 33 H 1.00898 * 110.99743 * 303.94953 * 10 9 8 34 34 H 1.08993 * 109.47737 * 60.00169 * 11 10 9 35 35 H 1.09000 * 109.47263 * 299.99731 * 11 10 9 36 36 H 1.09000 * 109.47050 * 299.99824 * 12 11 10 37 37 H 1.09001 * 109.46801 * 59.99937 * 12 11 10 38 38 H 1.09000 * 109.47486 * 299.99829 * 13 12 11 39 39 H 1.09001 * 109.47362 * 60.00551 * 13 12 11 40 40 H 0.97000 * 120.00540 * 180.02562 * 17 16 14 41 41 H 1.08005 * 125.88771 * 180.27142 * 22 8 7 42 42 H 1.07997 * 120.06714 * 179.72402 * 24 5 4 43 43 H 1.08003 * 119.93075 * 180.24995 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2000 0.0000 4 6 3.5754 1.2068 -0.0005 5 6 4.2761 0.0000 -0.0004 6 6 5.7549 0.0000 -0.0016 7 7 6.5105 -1.0606 -0.0067 8 6 7.8093 -0.8681 -0.0023 9 6 8.7881 -2.0140 -0.0020 10 7 9.0154 -2.4635 1.3780 11 6 9.9672 -3.5818 1.4174 12 6 10.1774 -4.0217 2.8677 13 6 11.1681 -5.1868 2.9086 14 6 11.3757 -5.6197 4.3372 15 1 10.8529 -5.1146 5.1358 16 6 12.2330 -6.6606 4.6245 17 7 12.8692 -7.2761 3.6519 18 14 12.4908 -7.1967 6.3952 19 1 11.6649 -6.3506 7.2937 20 1 12.0876 -8.6180 6.5457 21 1 13.9241 -7.0481 6.7537 22 6 8.2096 0.4078 -0.0037 23 16 6.7772 1.4347 -0.0038 24 6 3.5753 -1.2068 -0.0053 25 6 2.1958 -1.1999 0.0005 26 1 -0.3634 0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6523 2.1332 -0.0004 30 1 4.1119 2.1441 -0.0010 31 1 9.7320 -1.6857 -0.4373 32 1 8.3836 -2.8375 -0.5904 33 1 9.3296 -1.7011 1.9595 34 1 10.9191 -3.2640 0.9921 35 1 9.5713 -4.4164 0.8387 36 1 10.5730 -3.1872 3.4467 37 1 9.2252 -4.3396 3.2925 38 1 10.7720 -6.0211 2.3297 39 1 12.1203 -4.8692 2.4837 40 1 13.4721 -8.0086 3.8539 41 1 9.2340 0.7499 -0.0049 42 1 4.1119 -2.1441 -0.0097 43 1 1.6522 -2.1331 0.0008 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172118702.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:25 Heat of formation + Delta-G solvation = 48.426117 kcal Electronic energy + Delta-G solvation = -21701.534977 eV Core-core repulsion = 18451.353609 eV Total energy + Delta-G solvation = -3250.181367 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.19499 -39.30979 -36.31147 -34.01107 -33.31300 -31.59235 -31.33063 -30.13445 -27.69963 -27.14104 -25.17107 -23.69995 -23.12741 -22.18260 -21.27908 -20.18403 -19.35009 -18.25397 -16.77232 -16.28436 -15.62274 -15.54838 -15.43125 -15.12433 -14.77496 -14.46428 -14.17721 -13.92064 -13.81021 -13.70307 -13.31520 -13.12572 -12.84491 -12.57640 -12.39481 -12.21030 -11.78610 -11.61293 -11.39138 -11.38894 -11.20458 -10.83729 -10.55642 -10.46669 -9.96516 -9.85005 -9.67073 -9.44668 -9.31330 -9.27508 -9.01715 -8.35037 -8.31861 -8.14900 -5.96927 -3.98706 0.00215 1.06181 1.07784 1.23964 1.47204 2.64895 3.33360 3.40571 3.45491 3.48787 3.67639 4.41711 4.46376 4.49738 4.57373 4.65239 4.69732 4.93502 4.97011 5.04715 5.14126 5.19855 5.30866 5.38927 5.40845 5.44766 5.58633 5.65130 5.72933 5.82796 5.87873 5.95180 6.08307 6.15765 6.22727 6.33607 6.57813 6.73832 6.77207 7.16325 7.30562 7.56613 7.63538 7.72074 7.86860 8.03783 8.47263 9.08696 9.65139 11.14562 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.016973 B = 0.002011 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.245839 B =13919.316326 C =14990.810009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.073 4.073 3 C -0.121 4.121 4 C -0.094 4.094 5 C -0.031 4.031 6 C 0.116 3.884 7 N -0.441 5.441 8 C 0.085 3.915 9 C 0.129 3.871 10 N -0.683 5.683 11 C 0.060 3.940 12 C -0.107 4.107 13 C 0.021 3.979 14 C -0.517 4.517 15 H 0.056 0.944 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.285 1.285 22 C -0.245 4.245 23 S 0.075 5.925 24 C -0.064 4.064 25 C -0.122 4.122 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.128 0.872 30 H 0.124 0.876 31 H 0.046 0.954 32 H 0.089 0.911 33 H 0.337 0.663 34 H 0.026 0.974 35 H 0.069 0.931 36 H 0.044 0.956 37 H 0.056 0.944 38 H 0.017 0.983 39 H 0.014 0.986 40 H 0.259 0.741 41 H 0.178 0.822 42 H 0.139 0.861 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.884 21.066 -12.130 32.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.074 4.074 3 C -0.139 4.139 4 C -0.114 4.114 5 C -0.035 4.035 6 C -0.159 4.159 7 N -0.154 5.154 8 C -0.049 4.049 9 C -0.003 4.003 10 N -0.314 5.314 11 C -0.068 4.068 12 C -0.145 4.145 13 C -0.016 4.016 14 C -0.556 4.556 15 H 0.074 0.926 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.385 4.385 23 S 0.332 5.668 24 C -0.086 4.086 25 C -0.140 4.140 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.146 0.854 30 H 0.142 0.858 31 H 0.064 0.936 32 H 0.108 0.892 33 H 0.155 0.845 34 H 0.044 0.956 35 H 0.088 0.912 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.035 0.965 39 H 0.032 0.968 40 H 0.069 0.931 41 H 0.196 0.804 42 H 0.156 0.844 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -22.631 21.118 -12.166 33.259 hybrid contribution 1.896 -0.476 0.791 2.109 sum -20.735 20.642 -11.375 31.392 Atomic orbital electron populations 1.20845 0.90900 1.03098 1.02556 1.20117 0.96365 0.93140 0.97745 1.20885 0.93415 0.97871 1.01742 1.21122 0.94524 0.96507 0.99275 1.17817 0.86784 0.94446 1.04452 1.25835 0.97055 0.89577 1.03472 1.66317 1.04241 1.30282 1.14573 1.20113 0.90042 0.93948 1.00750 1.20487 0.93841 0.93711 0.92261 1.60513 1.51069 1.11819 1.07992 1.22156 0.92052 0.92515 1.00067 1.21624 1.00788 0.99631 0.92422 1.19077 0.93387 0.92109 0.97041 1.21302 1.25202 1.16104 0.92965 0.92617 1.25037 0.95917 0.96513 0.97144 1.69976 1.29042 1.23254 1.31345 0.86537 0.77830 0.78471 0.85185 1.19731 1.21015 1.21073 1.26839 1.03076 0.95576 1.12966 1.84761 0.98892 1.13106 1.70090 1.21342 0.93824 0.97783 0.95612 1.21063 0.93806 0.97908 1.01220 0.90879 0.91218 0.91350 0.85427 0.85798 0.93628 0.89238 0.84538 0.95601 0.91209 0.93680 0.92484 0.96498 0.96779 0.93117 0.80428 0.84356 0.85275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.56 10.01 36.00 0.36 -0.20 16 2 C -0.07 -0.53 5.89 -104.54 -0.62 -1.15 16 3 C -0.12 -0.88 9.68 -39.64 -0.38 -1.26 16 4 C -0.09 -0.80 9.61 -39.19 -0.38 -1.18 16 5 C -0.03 -0.33 5.87 -104.97 -0.62 -0.95 16 6 C 0.12 1.40 7.35 -14.29 -0.11 1.30 16 7 N -0.44 -6.19 10.11 -7.55 -0.08 -6.27 16 8 C 0.08 1.10 6.20 -84.40 -0.52 0.58 16 9 C 0.13 1.72 6.10 -4.97 -0.03 1.69 16 10 N -0.68 -10.65 6.49 -115.05 -0.75 -11.39 16 11 C 0.06 1.07 5.69 -3.82 -0.02 1.05 16 12 C -0.11 -2.28 5.41 -26.73 -0.14 -2.42 16 13 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 14 C -0.52 -15.03 9.11 -34.44 -0.31 -15.35 16 15 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 16 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.40 13.29 55.43 0.74 -26.66 16 18 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 19 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 C -0.24 -2.65 11.06 29.15 0.32 -2.32 16 23 S 0.07 0.74 22.40 -107.50 -2.41 -1.67 16 24 C -0.06 -0.66 9.68 -39.20 -0.38 -1.04 16 25 C -0.12 -1.01 9.68 -39.64 -0.38 -1.40 16 26 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 28 H 0.07 0.26 8.08 -51.93 -0.42 -0.16 16 29 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 30 H 0.12 0.87 7.30 -52.48 -0.38 0.49 16 31 H 0.05 0.53 8.09 -51.93 -0.42 0.11 16 32 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.34 4.96 8.72 -39.29 -0.34 4.62 16 34 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.18 1.50 8.06 -52.48 -0.42 1.08 16 42 H 0.14 1.52 7.82 -52.49 -0.41 1.11 16 43 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 LS Contribution 378.37 15.07 5.70 5.70 Total: -1.00 -32.50 378.37 -11.85 -44.35 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -6.59 Total: -0.38 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: -3.45 Total: -20.73 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: -0.09 Total: -44.32 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 16 Polarization: 0.74 SS G_CDS: -2.41 Total: -1.67 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.50 -11.85 -44.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172118702.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.772 kcal (2) G-P(sol) polarization free energy of solvation -32.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds