Wall clock time and date at job start Tue Mar 31 2020 10:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38360 * 119.85709 * 2 1 4 4 C 1.37962 * 120.14003 * 180.02562 * 3 2 1 5 5 C 1.39549 * 119.85793 * 359.97041 * 4 3 2 6 6 C 1.47877 * 120.14089 * 179.97438 * 5 4 3 7 7 N 1.30223 * 125.46909 * 180.27440 * 6 5 4 8 8 C 1.31302 * 117.03877 * 180.22340 * 7 6 5 9 9 C 1.50698 * 122.07684 * 179.75479 * 8 7 6 10 10 N 1.46905 * 109.47194 * 274.71759 * 9 8 7 11 11 C 1.46902 * 110.99800 * 180.02562 * 10 9 8 12 12 C 1.53006 * 109.46626 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.46623 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.46953 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99816 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00344 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99769 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00300 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46691 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46740 * 119.99592 * 18 16 14 21 21 H 1.48497 * 109.47025 * 239.99950 * 18 16 14 22 22 C 1.33723 * 115.84651 * 359.48993 * 8 7 6 23 23 S 1.76169 * 125.47290 * 359.97438 * 6 5 4 24 24 C 1.39550 * 119.71578 * 0.25763 * 5 4 3 25 25 C 1.37958 * 119.85355 * 359.49376 * 24 5 4 26 26 H 1.09004 * 109.47160 * 89.99664 * 1 2 3 27 27 H 1.08997 * 109.47196 * 209.99943 * 1 2 3 28 28 H 1.09003 * 109.46990 * 330.00233 * 1 2 3 29 29 H 1.07994 * 119.92593 * 359.97438 * 3 2 1 30 30 H 1.08005 * 120.06944 * 179.97438 * 4 3 2 31 31 H 1.09002 * 109.47213 * 154.71698 * 9 8 7 32 32 H 1.09001 * 109.47086 * 34.71453 * 9 8 7 33 33 H 1.00898 * 110.99743 * 303.94953 * 10 9 8 34 34 H 1.08993 * 109.47737 * 60.00169 * 11 10 9 35 35 H 1.09000 * 109.47263 * 299.99731 * 11 10 9 36 36 H 1.09000 * 109.47050 * 299.99824 * 12 11 10 37 37 H 1.09001 * 109.46801 * 59.99937 * 12 11 10 38 38 H 1.09000 * 109.47486 * 299.99829 * 13 12 11 39 39 H 1.09001 * 109.47362 * 60.00551 * 13 12 11 40 40 H 0.97000 * 120.00540 * 180.02562 * 17 16 14 41 41 H 1.08005 * 125.88771 * 180.27142 * 22 8 7 42 42 H 1.07997 * 120.06714 * 179.72402 * 24 5 4 43 43 H 1.08003 * 119.93075 * 180.24995 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2000 0.0000 4 6 3.5754 1.2068 -0.0005 5 6 4.2761 0.0000 -0.0004 6 6 5.7549 0.0000 -0.0016 7 7 6.5105 -1.0606 -0.0067 8 6 7.8093 -0.8681 -0.0023 9 6 8.7881 -2.0140 -0.0020 10 7 9.0154 -2.4635 1.3780 11 6 9.9672 -3.5818 1.4174 12 6 10.1774 -4.0217 2.8677 13 6 11.1681 -5.1868 2.9086 14 6 11.3757 -5.6197 4.3372 15 1 10.8529 -5.1146 5.1358 16 6 12.2330 -6.6606 4.6245 17 7 12.8692 -7.2761 3.6519 18 14 12.4908 -7.1967 6.3952 19 1 11.6649 -6.3506 7.2937 20 1 12.0876 -8.6180 6.5457 21 1 13.9241 -7.0481 6.7537 22 6 8.2096 0.4078 -0.0037 23 16 6.7772 1.4347 -0.0038 24 6 3.5753 -1.2068 -0.0053 25 6 2.1958 -1.1999 0.0005 26 1 -0.3634 0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6523 2.1332 -0.0004 30 1 4.1119 2.1441 -0.0010 31 1 9.7320 -1.6857 -0.4373 32 1 8.3836 -2.8375 -0.5904 33 1 9.3296 -1.7011 1.9595 34 1 10.9191 -3.2640 0.9921 35 1 9.5713 -4.4164 0.8387 36 1 10.5730 -3.1872 3.4467 37 1 9.2252 -4.3396 3.2925 38 1 10.7720 -6.0211 2.3297 39 1 12.1203 -4.8692 2.4837 40 1 13.4721 -8.0086 3.8539 41 1 9.2340 0.7499 -0.0049 42 1 4.1119 -2.1441 -0.0097 43 1 1.6522 -2.1331 0.0008 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172118702.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:24 Heat of formation + Delta-G solvation = 29.664101 kcal Electronic energy + Delta-G solvation = -21702.348559 eV Core-core repulsion = 18451.353609 eV Total energy + Delta-G solvation = -3250.994950 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.02226 -40.01344 -37.69637 -35.56621 -34.45345 -33.20561 -31.99006 -31.24314 -28.72293 -28.29565 -26.62329 -24.70895 -23.88263 -23.68278 -22.15462 -21.80225 -20.22090 -19.12587 -18.48172 -17.56135 -16.77354 -16.59618 -16.25067 -16.13096 -16.10410 -15.82175 -15.09974 -15.04251 -14.53285 -14.47504 -14.40521 -14.29361 -13.99051 -13.77450 -13.50452 -13.18436 -12.97899 -12.96408 -12.70875 -12.52028 -12.40129 -12.27331 -12.14070 -11.94406 -11.55978 -11.41185 -11.13523 -10.74022 -10.69419 -10.56671 -10.18672 -9.95369 -9.43218 -9.04058 -8.21127 -6.32041 -0.77899 0.26317 0.42106 0.50481 0.62388 1.38918 1.39598 1.53208 1.76117 2.40307 2.81141 2.88749 3.11764 3.34186 3.73916 3.89880 4.01079 4.03967 4.11553 4.22700 4.25232 4.34302 4.41187 4.46220 4.49203 4.70157 4.71175 4.78186 4.85377 4.89581 4.95775 5.00227 5.08004 5.11973 5.22292 5.27287 5.40929 5.47293 5.50737 5.63398 5.73793 5.84782 5.96298 5.97613 6.25845 6.39281 6.75055 6.84674 7.37002 8.90939 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.016973 B = 0.002011 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.245839 B =13919.316326 C =14990.810009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.071 4.071 3 C -0.120 4.120 4 C -0.096 4.096 5 C -0.056 4.056 6 C 0.098 3.902 7 N -0.478 5.478 8 C 0.060 3.940 9 C 0.133 3.867 10 N -0.689 5.689 11 C 0.075 3.925 12 C -0.092 4.092 13 C 0.025 3.975 14 C -0.543 4.543 15 H 0.058 0.942 16 C -0.002 4.002 17 N -0.933 5.933 18 Si 0.967 3.033 19 H -0.263 1.263 20 H -0.277 1.277 21 H -0.276 1.276 22 C -0.242 4.242 23 S 0.126 5.874 24 C -0.084 4.084 25 C -0.129 4.129 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.157 0.843 30 H 0.138 0.862 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.344 0.656 34 H 0.033 0.967 35 H 0.061 0.939 36 H 0.051 0.949 37 H 0.047 0.953 38 H -0.009 1.009 39 H -0.005 1.005 40 H 0.264 0.736 41 H 0.203 0.797 42 H 0.119 0.881 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.175 23.300 -11.504 34.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.073 4.073 3 C -0.138 4.138 4 C -0.116 4.116 5 C -0.060 4.060 6 C -0.177 4.177 7 N -0.192 5.192 8 C -0.073 4.073 9 C 0.002 3.998 10 N -0.321 5.321 11 C -0.054 4.054 12 C -0.130 4.130 13 C -0.013 4.013 14 C -0.581 4.581 15 H 0.076 0.924 16 C -0.200 4.200 17 N -0.573 5.573 18 Si 0.791 3.209 19 H -0.187 1.187 20 H -0.203 1.203 21 H -0.201 1.201 22 C -0.382 4.382 23 S 0.383 5.617 24 C -0.106 4.106 25 C -0.147 4.147 26 H 0.102 0.898 27 H 0.093 0.907 28 H 0.101 0.899 29 H 0.175 0.825 30 H 0.156 0.844 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.162 0.838 34 H 0.052 0.948 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.010 0.990 39 H 0.013 0.987 40 H 0.073 0.927 41 H 0.220 0.780 42 H 0.137 0.863 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -23.936 23.375 -11.548 35.393 hybrid contribution 2.211 -1.104 0.544 2.530 sum -21.726 22.271 -11.003 33.001 Atomic orbital electron populations 1.20909 0.88776 1.04078 1.03503 1.20487 0.97919 0.92681 0.96169 1.21267 0.93019 0.99089 1.00422 1.21329 0.95275 0.96164 0.98827 1.18013 0.86473 0.95396 1.06141 1.26156 0.97890 0.90372 1.03240 1.66288 1.04972 1.31926 1.16064 1.20059 0.89829 0.94541 1.02830 1.20435 0.94947 0.93805 0.90611 1.60387 1.50187 1.11686 1.09858 1.21837 0.92987 0.93298 0.97269 1.21371 0.98699 0.97852 0.95097 1.18976 0.93614 0.93103 0.95574 1.21724 1.25586 1.16686 0.94126 0.92403 1.26003 0.95442 0.96458 1.02093 1.70100 1.29595 1.23774 1.33836 0.85376 0.78120 0.78147 0.79267 1.18747 1.20314 1.20132 1.27176 1.04735 0.95164 1.11147 1.84491 0.97234 1.11100 1.68844 1.21322 0.94838 0.97225 0.97212 1.21273 0.93082 0.99279 1.01050 0.89797 0.90736 0.89941 0.82535 0.84397 0.91558 0.90463 0.83801 0.94850 0.92001 0.92987 0.93413 0.99013 0.98670 0.92739 0.78029 0.86312 0.83955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 10.01 71.23 0.71 -0.09 16 2 C -0.07 -0.92 5.89 -19.81 -0.12 -1.04 16 3 C -0.12 -1.48 9.68 22.23 0.22 -1.27 16 4 C -0.10 -1.52 9.61 22.52 0.22 -1.30 16 5 C -0.06 -1.22 5.87 -20.09 -0.12 -1.34 16 6 C 0.10 2.39 7.35 87.49 0.64 3.03 16 7 N -0.48 -13.82 10.11 -177.80 -1.80 -15.62 16 8 C 0.06 1.56 6.20 41.61 0.26 1.82 16 9 C 0.13 3.54 6.10 85.56 0.52 4.06 16 10 N -0.69 -21.44 6.49 -517.91 -3.36 -24.80 16 11 C 0.07 2.68 5.69 86.31 0.49 3.17 16 12 C -0.09 -4.00 5.41 30.60 0.17 -3.83 16 13 C 0.02 1.36 4.97 29.85 0.15 1.51 16 14 C -0.54 -32.02 9.11 25.60 0.23 -31.79 16 15 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 16 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 17 N -0.93 -57.85 13.29 21.45 0.28 -57.57 16 18 Si 0.97 45.36 29.54 68.60 2.03 47.38 16 19 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 22 C -0.24 -4.89 11.06 66.79 0.74 -4.15 16 23 S 0.13 2.30 22.40 -56.49 -1.27 1.03 16 24 C -0.08 -1.84 9.68 22.52 0.22 -1.62 16 25 C -0.13 -2.12 9.68 22.23 0.22 -1.90 16 26 H 0.08 0.44 8.14 -2.38 -0.02 0.42 16 27 H 0.07 0.47 8.08 -2.39 -0.02 0.45 16 28 H 0.08 0.37 8.08 -2.39 -0.02 0.35 16 29 H 0.16 0.98 8.06 -2.91 -0.02 0.95 16 30 H 0.14 1.68 7.30 -2.91 -0.02 1.66 16 31 H 0.07 1.47 8.09 -2.39 -0.02 1.45 16 32 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.34 9.87 8.72 -89.70 -0.78 9.09 16 34 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 38 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 39 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 40 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 41 H 0.20 2.89 8.06 -2.91 -0.02 2.87 16 42 H 0.12 2.94 7.82 -2.91 -0.02 2.91 16 43 H 0.14 1.81 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -71.27 378.37 1.11 -70.17 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 0.22 Total: 13.83 kcal Atomic # 6 Polarization: -39.42 SS G_CDS: 5.00 Total: -34.42 kcal Atomic # 7 Polarization: -93.12 SS G_CDS: -4.88 Total: -97.99 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -1.27 Total: 1.03 kcal Total: -71.27 1.11 -70.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172118702.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.831 kcal (2) G-P(sol) polarization free energy of solvation -71.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds