Wall clock time and date at job start Tue Mar 31 2020 11:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47638 * 2 1 4 4 C 1.50696 * 109.47063 * 120.00826 * 2 1 3 5 5 C 1.38352 * 119.86012 * 119.99685 * 4 2 1 6 6 C 1.37970 * 120.14388 * 179.97438 * 5 4 2 7 7 C 1.39553 * 119.85466 * 359.97419 * 6 5 4 8 8 C 1.47865 * 120.13940 * 180.02562 * 7 6 5 9 9 N 1.30217 * 125.47317 * 359.97438 * 8 7 6 10 10 C 1.31315 * 117.04230 * 180.02562 * 9 8 7 11 11 C 1.33719 * 115.84538 * 359.97438 * 10 9 8 12 12 C 1.50706 * 125.89290 * 180.02562 * 11 10 9 13 13 N 1.46502 * 109.46724 * 89.97954 * 12 11 10 14 14 C 1.46499 * 120.00170 * 270.00015 * 13 12 11 15 15 C 1.36938 * 119.99949 * 90.00556 * 13 12 11 16 16 H 1.08003 * 119.99808 * 22.36687 * 15 13 12 17 17 C 1.38811 * 120.00216 * 202.37039 * 15 13 12 18 18 N 1.31615 * 119.99749 * 11.33492 * 17 15 13 19 19 Si 1.86799 * 120.00160 * 191.33496 * 17 15 13 20 20 H 1.48505 * 109.46763 * 59.99890 * 19 17 15 21 21 H 1.48496 * 109.47180 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47151 * 300.00007 * 19 17 15 23 23 S 1.76182 * 125.46978 * 179.97438 * 8 7 6 24 24 C 1.39552 * 119.71553 * 0.28037 * 7 6 5 25 25 C 1.37971 * 119.85391 * 359.46514 * 24 7 6 26 26 H 1.09004 * 109.47035 * 59.99013 * 1 2 3 27 27 H 1.08993 * 109.47333 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46593 * 300.00101 * 1 2 3 29 29 H 1.09007 * 109.46593 * 239.99899 * 2 1 3 30 30 H 1.08993 * 109.47587 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47238 * 300.00810 * 3 2 1 32 32 H 1.09006 * 109.46746 * 60.00020 * 3 2 1 33 33 H 1.07995 * 119.92629 * 359.97401 * 5 4 2 34 34 H 1.07993 * 120.07464 * 180.02562 * 6 5 4 35 35 H 1.07998 * 122.07723 * 179.97438 * 10 9 8 36 36 H 1.08995 * 109.47265 * 209.98358 * 12 11 10 37 37 H 1.08997 * 109.46554 * 329.98307 * 12 11 10 38 38 H 1.09000 * 109.46956 * 94.20437 * 14 13 12 39 39 H 1.08992 * 109.47121 * 214.19981 * 14 13 12 40 40 H 1.08994 * 109.47102 * 334.20306 * 14 13 12 41 41 H 0.97006 * 119.99768 * 180.02562 * 18 17 15 42 42 H 1.08000 * 120.07191 * 179.72559 * 24 7 6 43 43 H 1.08001 * 119.92931 * 180.23610 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7106 1.2303 5 6 2.8275 -1.8352 1.0999 6 6 3.2910 -2.4900 2.2223 7 6 2.9566 -2.0153 3.4913 8 6 3.4504 -2.7118 4.6985 9 7 4.2019 -3.7752 4.7031 10 6 4.5446 -4.2590 5.8748 11 6 4.0778 -3.5963 6.9383 12 6 4.3304 -3.9509 8.3811 13 7 5.5406 -3.2691 8.8469 14 6 6.8458 -3.9207 8.7132 15 6 5.4516 -2.0228 9.4072 16 1 4.5184 -1.6891 9.8364 17 6 6.5608 -1.1884 9.4236 18 7 7.6252 -1.4947 8.7126 19 14 6.5428 0.3692 10.4546 20 1 6.3390 0.0152 11.8824 21 1 7.8378 1.0794 10.3012 22 1 5.4374 1.2507 10.0005 23 16 3.1165 -2.2361 6.3617 24 6 2.1498 -0.8835 3.6160 25 6 1.6971 -0.2348 2.4855 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 1.8933 -0.5139 -0.8901 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6768 1.9563 0.8901 33 1 3.0859 -2.2013 0.1173 34 1 3.9120 -3.3675 2.1192 35 1 5.1650 -5.1375 5.9734 36 1 3.4804 -3.6367 8.9867 37 1 4.4627 -5.0290 8.4724 38 1 7.3197 -3.5981 7.7862 39 1 7.4770 -3.6465 9.5584 40 1 6.7119 -5.0023 8.6956 41 1 8.4005 -0.9117 8.7243 42 1 1.8838 -0.5137 4.5952 43 1 1.0758 0.6435 2.5806 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174838284.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:29 Heat of formation + Delta-G solvation = 76.288280 kcal Electronic energy + Delta-G solvation = -22922.127225 eV Core-core repulsion = 19673.154051 eV Total energy + Delta-G solvation = -3248.973173 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.66644 -38.62798 -35.94026 -35.41277 -32.12582 -31.04631 -30.72561 -29.00275 -27.34485 -26.29479 -25.76904 -24.23632 -22.87757 -22.26262 -21.15970 -20.21030 -18.88477 -17.32033 -16.93570 -16.20985 -15.45342 -15.12381 -14.95238 -14.41549 -14.10967 -13.97443 -13.74605 -13.65486 -13.49188 -13.32923 -13.24314 -12.86745 -12.53570 -12.40810 -12.11486 -11.68976 -11.57038 -11.37468 -11.34355 -10.99425 -10.98215 -10.82128 -10.74134 -10.66126 -10.31791 -10.16452 -10.06518 -9.18711 -9.11561 -8.89900 -8.73527 -8.54103 -7.60972 -6.99838 -5.93749 -3.33191 0.69453 1.47062 1.85249 2.00280 2.46336 3.29653 3.34567 3.35255 3.44256 3.99844 4.35434 4.42068 4.57943 4.63587 4.99951 5.00810 5.08471 5.25290 5.26711 5.40380 5.40789 5.47196 5.52415 5.57825 5.61787 5.74304 5.76119 5.81591 5.92207 6.00451 6.02323 6.04029 6.10999 6.31349 6.42660 6.52472 6.61670 6.62358 6.64293 6.87901 7.00122 7.23309 7.57505 7.64547 8.17257 8.33844 9.00770 9.61357 10.09726 11.09203 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.017172 B = 0.003153 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.172952 B = 8878.203109 C = 9759.048186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.056 4.056 3 C -0.145 4.145 4 C -0.079 4.079 5 C -0.118 4.118 6 C -0.081 4.081 7 C -0.002 4.002 8 C 0.052 3.948 9 N -0.454 5.454 10 C 0.000 4.000 11 C -0.173 4.173 12 C 0.208 3.792 13 N -0.578 5.578 14 C 0.159 3.841 15 C -0.254 4.254 16 H 0.074 0.926 17 C 0.007 3.993 18 N -0.893 5.893 19 Si 0.910 3.090 20 H -0.280 1.280 21 H -0.288 1.288 22 H -0.279 1.279 23 S 0.084 5.916 24 C -0.104 4.104 25 C -0.112 4.112 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.123 0.877 34 H 0.132 0.868 35 H 0.162 0.838 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.031 0.969 39 H 0.052 0.948 40 H 0.003 0.997 41 H 0.258 0.742 42 H 0.124 0.876 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.199 0.593 -13.992 18.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.074 4.074 3 C -0.202 4.202 4 C -0.080 4.080 5 C -0.137 4.137 6 C -0.103 4.103 7 C -0.006 4.006 8 C -0.221 4.221 9 N -0.167 5.167 10 C -0.152 4.152 11 C -0.299 4.299 12 C 0.078 3.922 13 N -0.297 5.297 14 C 0.014 3.986 15 C -0.385 4.385 16 H 0.091 0.909 17 C -0.194 4.194 18 N -0.535 5.535 19 Si 0.738 3.262 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.205 1.205 23 S 0.339 5.661 24 C -0.125 4.125 25 C -0.130 4.130 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.140 0.860 34 H 0.150 0.850 35 H 0.180 0.820 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.050 0.950 39 H 0.070 0.930 40 H 0.022 0.978 41 H 0.068 0.932 42 H 0.142 0.858 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.350 1.227 -13.889 18.627 hybrid contribution 0.943 0.289 0.518 1.114 sum -11.407 1.516 -13.372 17.642 Atomic orbital electron populations 1.21863 0.94402 1.02029 1.01838 1.20120 0.95881 0.96031 0.95397 1.21868 1.01414 0.95108 1.01840 1.19902 0.97824 0.95748 0.94547 1.20966 0.98575 0.95746 0.98374 1.21225 0.98593 0.99726 0.90724 1.17863 0.97849 0.94780 0.90071 1.25409 1.04355 0.97217 0.95111 1.66321 1.11690 1.09951 1.28761 1.21193 1.05142 1.03419 0.85483 1.27765 1.01010 0.97218 1.03926 1.19692 0.91240 0.96361 0.84889 1.44462 1.02066 1.17845 1.65343 1.20918 0.85953 0.90326 1.01382 1.19295 0.98087 0.91719 1.29386 0.90871 1.25174 0.97275 0.98161 0.98775 1.70070 1.05232 1.38179 1.40014 0.86251 0.77201 0.82600 0.80104 1.20651 1.21342 1.20515 1.84685 1.48590 1.31387 1.01472 1.21158 0.97452 0.94815 0.99032 1.20765 1.00735 0.99989 0.91462 0.92533 0.92499 0.92386 0.90539 0.92427 0.92530 0.92357 0.85951 0.84996 0.82047 0.92221 0.91538 0.95038 0.92977 0.97845 0.93189 0.85841 0.85889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.01 37.16 0.33 -0.75 16 2 C -0.06 -0.48 3.09 -91.77 -0.28 -0.76 16 3 C -0.15 -1.16 9.00 37.16 0.33 -0.82 16 4 C -0.08 -0.88 4.79 -104.54 -0.50 -1.38 16 5 C -0.12 -1.42 9.65 -39.64 -0.38 -1.80 16 6 C -0.08 -1.18 9.68 -39.19 -0.38 -1.56 16 7 C 0.00 -0.03 5.87 -104.98 -0.62 -0.65 16 8 C 0.05 0.99 7.35 -14.30 -0.11 0.89 16 9 N -0.45 -9.09 10.14 -11.36 -0.12 -9.20 16 10 C 0.00 0.00 11.14 -19.36 -0.22 -0.22 16 11 C -0.17 -3.50 6.17 -35.89 -0.22 -3.73 16 12 C 0.21 4.20 6.23 -5.19 -0.03 4.16 16 13 N -0.58 -14.09 2.91 -182.51 -0.53 -14.62 16 14 C 0.16 3.79 9.01 59.85 0.54 4.33 16 15 C -0.25 -6.73 9.67 -15.06 -0.15 -6.88 16 16 H 0.07 1.89 7.84 -52.48 -0.41 1.47 16 17 C 0.01 0.19 5.13 -17.43 -0.09 0.10 16 18 N -0.89 -25.44 10.59 55.49 0.59 -24.86 16 19 Si 0.91 21.30 29.57 -169.99 -5.03 16.27 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 S 0.08 1.61 22.40 -107.50 -2.41 -0.80 16 24 C -0.10 -1.48 9.61 -39.19 -0.38 -1.86 16 25 C -0.11 -1.32 8.69 -39.64 -0.34 -1.67 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.43 7.38 -51.93 -0.38 0.05 16 29 H 0.08 0.59 7.87 -51.93 -0.41 0.19 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.47 7.37 -51.93 -0.38 0.08 16 33 H 0.12 1.17 7.94 -52.49 -0.42 0.75 16 34 H 0.13 1.94 7.82 -52.49 -0.41 1.53 16 35 H 0.16 2.92 8.06 -52.49 -0.42 2.49 16 36 H 0.06 1.15 8.03 -51.93 -0.42 0.73 16 37 H 0.07 1.17 7.86 -51.93 -0.41 0.77 16 38 H 0.03 0.83 7.42 -51.93 -0.39 0.44 16 39 H 0.05 1.33 7.19 -51.93 -0.37 0.95 16 40 H 0.00 0.06 7.84 -51.93 -0.41 -0.35 16 41 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.12 1.69 7.30 -52.49 -0.38 1.30 16 43 H 0.12 1.19 7.08 -52.49 -0.37 0.82 16 LS Contribution 368.90 15.07 5.56 5.56 Total: -1.00 -29.88 368.90 -10.83 -40.71 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -6.41 Total: -0.48 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -2.49 Total: -12.57 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: -0.06 Total: -48.68 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -2.41 Total: -0.80 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.88 -10.83 -40.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174838284.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.994 kcal (2) G-P(sol) polarization free energy of solvation -29.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds