Wall clock time and date at job start Tue Mar 31 2020 11:14:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52997 * 109.47638 * 2 1
4 4 C 1.50696 * 109.47063 * 120.00826 * 2 1 3
5 5 C 1.38352 * 119.86012 * 119.99685 * 4 2 1
6 6 C 1.37970 * 120.14388 * 179.97438 * 5 4 2
7 7 C 1.39553 * 119.85466 * 359.97419 * 6 5 4
8 8 C 1.47865 * 120.13940 * 180.02562 * 7 6 5
9 9 N 1.30217 * 125.47317 * 359.97438 * 8 7 6
10 10 C 1.31315 * 117.04230 * 180.02562 * 9 8 7
11 11 C 1.33719 * 115.84538 * 359.97438 * 10 9 8
12 12 C 1.50706 * 125.89290 * 180.02562 * 11 10 9
13 13 N 1.46502 * 109.46724 * 89.97954 * 12 11 10
14 14 C 1.46499 * 120.00170 * 270.00015 * 13 12 11
15 15 C 1.36938 * 119.99949 * 90.00556 * 13 12 11
16 16 H 1.08003 * 119.99808 * 22.36687 * 15 13 12
17 17 C 1.38811 * 120.00216 * 202.37039 * 15 13 12
18 18 N 1.31615 * 119.99749 * 11.33492 * 17 15 13
19 19 Si 1.86799 * 120.00160 * 191.33496 * 17 15 13
20 20 H 1.48505 * 109.46763 * 59.99890 * 19 17 15
21 21 H 1.48496 * 109.47180 * 179.97438 * 19 17 15
22 22 H 1.48501 * 109.47151 * 300.00007 * 19 17 15
23 23 S 1.76182 * 125.46978 * 179.97438 * 8 7 6
24 24 C 1.39552 * 119.71553 * 0.28037 * 7 6 5
25 25 C 1.37971 * 119.85391 * 359.46514 * 24 7 6
26 26 H 1.09004 * 109.47035 * 59.99013 * 1 2 3
27 27 H 1.08993 * 109.47333 * 180.02562 * 1 2 3
28 28 H 1.09007 * 109.46593 * 300.00101 * 1 2 3
29 29 H 1.09007 * 109.46593 * 239.99899 * 2 1 3
30 30 H 1.08993 * 109.47587 * 180.02562 * 3 2 1
31 31 H 1.09004 * 109.47238 * 300.00810 * 3 2 1
32 32 H 1.09006 * 109.46746 * 60.00020 * 3 2 1
33 33 H 1.07995 * 119.92629 * 359.97401 * 5 4 2
34 34 H 1.07993 * 120.07464 * 180.02562 * 6 5 4
35 35 H 1.07998 * 122.07723 * 179.97438 * 10 9 8
36 36 H 1.08995 * 109.47265 * 209.98358 * 12 11 10
37 37 H 1.08997 * 109.46554 * 329.98307 * 12 11 10
38 38 H 1.09000 * 109.46956 * 94.20437 * 14 13 12
39 39 H 1.08992 * 109.47121 * 214.19981 * 14 13 12
40 40 H 1.08994 * 109.47102 * 334.20306 * 14 13 12
41 41 H 0.97006 * 119.99768 * 180.02562 * 18 17 15
42 42 H 1.08000 * 120.07191 * 179.72559 * 24 7 6
43 43 H 1.08001 * 119.92931 * 180.23610 * 25 24 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 6 2.0323 -0.7106 1.2303
5 6 2.8275 -1.8352 1.0999
6 6 3.2910 -2.4900 2.2223
7 6 2.9566 -2.0153 3.4913
8 6 3.4504 -2.7118 4.6985
9 7 4.2019 -3.7752 4.7031
10 6 4.5446 -4.2590 5.8748
11 6 4.0778 -3.5963 6.9383
12 6 4.3304 -3.9509 8.3811
13 7 5.5406 -3.2691 8.8469
14 6 6.8458 -3.9207 8.7132
15 6 5.4516 -2.0228 9.4072
16 1 4.5184 -1.6891 9.8364
17 6 6.5608 -1.1884 9.4236
18 7 7.6252 -1.4947 8.7126
19 14 6.5428 0.3692 10.4546
20 1 6.3390 0.0152 11.8824
21 1 7.8378 1.0794 10.3012
22 1 5.4374 1.2507 10.0005
23 16 3.1165 -2.2361 6.3617
24 6 2.1498 -0.8835 3.6160
25 6 1.6971 -0.2348 2.4855
26 1 -0.3633 0.5140 -0.8899
27 1 -0.3633 -1.0276 0.0005
28 1 -0.3633 0.5139 0.8901
29 1 1.8933 -0.5139 -0.8901
30 1 3.1301 1.4424 -0.0005
31 1 1.6767 1.9564 -0.8899
32 1 1.6768 1.9563 0.8901
33 1 3.0859 -2.2013 0.1173
34 1 3.9120 -3.3675 2.1192
35 1 5.1650 -5.1375 5.9734
36 1 3.4804 -3.6367 8.9867
37 1 4.4627 -5.0290 8.4724
38 1 7.3197 -3.5981 7.7862
39 1 7.4770 -3.6465 9.5584
40 1 6.7119 -5.0023 8.6956
41 1 8.4005 -0.9117 8.7243
42 1 1.8838 -0.5137 4.5952
43 1 1.0758 0.6435 2.5806
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000174838284.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:14:29
Heat of formation + Delta-G solvation = 76.288280 kcal
Electronic energy + Delta-G solvation = -22922.127225 eV
Core-core repulsion = 19673.154051 eV
Total energy + Delta-G solvation = -3248.973173 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 316.130 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-39.66644 -38.62798 -35.94026 -35.41277 -32.12582 -31.04631 -30.72561 -29.00275
-27.34485 -26.29479 -25.76904 -24.23632 -22.87757 -22.26262 -21.15970 -20.21030
-18.88477 -17.32033 -16.93570 -16.20985 -15.45342 -15.12381 -14.95238 -14.41549
-14.10967 -13.97443 -13.74605 -13.65486 -13.49188 -13.32923 -13.24314 -12.86745
-12.53570 -12.40810 -12.11486 -11.68976 -11.57038 -11.37468 -11.34355 -10.99425
-10.98215 -10.82128 -10.74134 -10.66126 -10.31791 -10.16452 -10.06518 -9.18711
-9.11561 -8.89900 -8.73527 -8.54103 -7.60972 -6.99838 -5.93749 -3.33191
0.69453 1.47062 1.85249 2.00280 2.46336 3.29653 3.34567 3.35255
3.44256 3.99844 4.35434 4.42068 4.57943 4.63587 4.99951 5.00810
5.08471 5.25290 5.26711 5.40380 5.40789 5.47196 5.52415 5.57825
5.61787 5.74304 5.76119 5.81591 5.92207 6.00451 6.02323 6.04029
6.10999 6.31349 6.42660 6.52472 6.61670 6.62358 6.64293 6.87901
7.00122 7.23309 7.57505 7.64547 8.17257 8.33844 9.00770 9.61357
10.09726 11.09203
Molecular weight = 316.13amu
Principal moments of inertia in cm(-1)
A = 0.017172 B = 0.003153 C = 0.002868
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1630.172952 B = 8878.203109 C = 9759.048186
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.056 4.056
3 C -0.145 4.145
4 C -0.079 4.079
5 C -0.118 4.118
6 C -0.081 4.081
7 C -0.002 4.002
8 C 0.052 3.948
9 N -0.454 5.454
10 C 0.000 4.000
11 C -0.173 4.173
12 C 0.208 3.792
13 N -0.578 5.578
14 C 0.159 3.841
15 C -0.254 4.254
16 H 0.074 0.926
17 C 0.007 3.993
18 N -0.893 5.893
19 Si 0.910 3.090
20 H -0.280 1.280
21 H -0.288 1.288
22 H -0.279 1.279
23 S 0.084 5.916
24 C -0.104 4.104
25 C -0.112 4.112
26 H 0.056 0.944
27 H 0.056 0.944
28 H 0.057 0.943
29 H 0.076 0.924
30 H 0.057 0.943
31 H 0.056 0.944
32 H 0.057 0.943
33 H 0.123 0.877
34 H 0.132 0.868
35 H 0.162 0.838
36 H 0.060 0.940
37 H 0.067 0.933
38 H 0.031 0.969
39 H 0.052 0.948
40 H 0.003 0.997
41 H 0.258 0.742
42 H 0.124 0.876
43 H 0.123 0.877
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.199 0.593 -13.992 18.573
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.074 4.074
3 C -0.202 4.202
4 C -0.080 4.080
5 C -0.137 4.137
6 C -0.103 4.103
7 C -0.006 4.006
8 C -0.221 4.221
9 N -0.167 5.167
10 C -0.152 4.152
11 C -0.299 4.299
12 C 0.078 3.922
13 N -0.297 5.297
14 C 0.014 3.986
15 C -0.385 4.385
16 H 0.091 0.909
17 C -0.194 4.194
18 N -0.535 5.535
19 Si 0.738 3.262
20 H -0.207 1.207
21 H -0.213 1.213
22 H -0.205 1.205
23 S 0.339 5.661
24 C -0.125 4.125
25 C -0.130 4.130
26 H 0.075 0.925
27 H 0.075 0.925
28 H 0.076 0.924
29 H 0.095 0.905
30 H 0.076 0.924
31 H 0.075 0.925
32 H 0.076 0.924
33 H 0.140 0.860
34 H 0.150 0.850
35 H 0.180 0.820
36 H 0.078 0.922
37 H 0.085 0.915
38 H 0.050 0.950
39 H 0.070 0.930
40 H 0.022 0.978
41 H 0.068 0.932
42 H 0.142 0.858
43 H 0.141 0.859
Dipole moment (debyes) X Y Z Total
from point charges -12.350 1.227 -13.889 18.627
hybrid contribution 0.943 0.289 0.518 1.114
sum -11.407 1.516 -13.372 17.642
Atomic orbital electron populations
1.21863 0.94402 1.02029 1.01838 1.20120 0.95881 0.96031 0.95397
1.21868 1.01414 0.95108 1.01840 1.19902 0.97824 0.95748 0.94547
1.20966 0.98575 0.95746 0.98374 1.21225 0.98593 0.99726 0.90724
1.17863 0.97849 0.94780 0.90071 1.25409 1.04355 0.97217 0.95111
1.66321 1.11690 1.09951 1.28761 1.21193 1.05142 1.03419 0.85483
1.27765 1.01010 0.97218 1.03926 1.19692 0.91240 0.96361 0.84889
1.44462 1.02066 1.17845 1.65343 1.20918 0.85953 0.90326 1.01382
1.19295 0.98087 0.91719 1.29386 0.90871 1.25174 0.97275 0.98161
0.98775 1.70070 1.05232 1.38179 1.40014 0.86251 0.77201 0.82600
0.80104 1.20651 1.21342 1.20515 1.84685 1.48590 1.31387 1.01472
1.21158 0.97452 0.94815 0.99032 1.20765 1.00735 0.99989 0.91462
0.92533 0.92499 0.92386 0.90539 0.92427 0.92530 0.92357 0.85951
0.84996 0.82047 0.92221 0.91538 0.95038 0.92977 0.97845 0.93189
0.85841 0.85889
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.08 9.01 37.16 0.33 -0.75 16
2 C -0.06 -0.48 3.09 -91.77 -0.28 -0.76 16
3 C -0.15 -1.16 9.00 37.16 0.33 -0.82 16
4 C -0.08 -0.88 4.79 -104.54 -0.50 -1.38 16
5 C -0.12 -1.42 9.65 -39.64 -0.38 -1.80 16
6 C -0.08 -1.18 9.68 -39.19 -0.38 -1.56 16
7 C 0.00 -0.03 5.87 -104.98 -0.62 -0.65 16
8 C 0.05 0.99 7.35 -14.30 -0.11 0.89 16
9 N -0.45 -9.09 10.14 -11.36 -0.12 -9.20 16
10 C 0.00 0.00 11.14 -19.36 -0.22 -0.22 16
11 C -0.17 -3.50 6.17 -35.89 -0.22 -3.73 16
12 C 0.21 4.20 6.23 -5.19 -0.03 4.16 16
13 N -0.58 -14.09 2.91 -182.51 -0.53 -14.62 16
14 C 0.16 3.79 9.01 59.85 0.54 4.33 16
15 C -0.25 -6.73 9.67 -15.06 -0.15 -6.88 16
16 H 0.07 1.89 7.84 -52.48 -0.41 1.47 16
17 C 0.01 0.19 5.13 -17.43 -0.09 0.10 16
18 N -0.89 -25.44 10.59 55.49 0.59 -24.86 16
19 Si 0.91 21.30 29.57 -169.99 -5.03 16.27 16
20 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16
21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16
22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16
23 S 0.08 1.61 22.40 -107.50 -2.41 -0.80 16
24 C -0.10 -1.48 9.61 -39.19 -0.38 -1.86 16
25 C -0.11 -1.32 8.69 -39.64 -0.34 -1.67 16
26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16
27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16
28 H 0.06 0.43 7.38 -51.93 -0.38 0.05 16
29 H 0.08 0.59 7.87 -51.93 -0.41 0.19 16
30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16
31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16
32 H 0.06 0.47 7.37 -51.93 -0.38 0.08 16
33 H 0.12 1.17 7.94 -52.49 -0.42 0.75 16
34 H 0.13 1.94 7.82 -52.49 -0.41 1.53 16
35 H 0.16 2.92 8.06 -52.49 -0.42 2.49 16
36 H 0.06 1.15 8.03 -51.93 -0.42 0.73 16
37 H 0.07 1.17 7.86 -51.93 -0.41 0.77 16
38 H 0.03 0.83 7.42 -51.93 -0.39 0.44 16
39 H 0.05 1.33 7.19 -51.93 -0.37 0.95 16
40 H 0.00 0.06 7.84 -51.93 -0.41 -0.35 16
41 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16
42 H 0.12 1.69 7.30 -52.49 -0.38 1.30 16
43 H 0.12 1.19 7.08 -52.49 -0.37 0.82 16
LS Contribution 368.90 15.07 5.56 5.56
Total: -1.00 -29.88 368.90 -10.83 -40.71
By element:
Atomic # 1 Polarization: 5.93 SS G_CDS: -6.41 Total: -0.48 kcal
Atomic # 6 Polarization: -10.09 SS G_CDS: -2.49 Total: -12.57 kcal
Atomic # 7 Polarization: -48.62 SS G_CDS: -0.06 Total: -48.68 kcal
Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal
Atomic # 16 Polarization: 1.61 SS G_CDS: -2.41 Total: -0.80 kcal
Total LS contribution 5.56 Total: 5.56 kcal
Total: -29.88 -10.83 -40.71 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000174838284.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 116.994 kcal
(2) G-P(sol) polarization free energy of solvation -29.880 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.114 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.826 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.706 kcal
(6) G-S(sol) free energy of system = (1) + (5) 76.288 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds