Wall clock time and date at job start Tue Mar 31 2020 11:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47638 * 2 1 4 4 C 1.50696 * 109.47063 * 120.00826 * 2 1 3 5 5 C 1.38352 * 119.86012 * 119.99685 * 4 2 1 6 6 C 1.37970 * 120.14388 * 179.97438 * 5 4 2 7 7 C 1.39553 * 119.85466 * 359.97419 * 6 5 4 8 8 C 1.47865 * 120.13940 * 180.02562 * 7 6 5 9 9 N 1.30217 * 125.47317 * 359.97438 * 8 7 6 10 10 C 1.31315 * 117.04230 * 180.02562 * 9 8 7 11 11 C 1.33719 * 115.84538 * 359.97438 * 10 9 8 12 12 C 1.50706 * 125.89290 * 180.02562 * 11 10 9 13 13 N 1.46502 * 109.46724 * 89.97954 * 12 11 10 14 14 C 1.46499 * 120.00170 * 270.00015 * 13 12 11 15 15 C 1.36938 * 119.99949 * 90.00556 * 13 12 11 16 16 H 1.08003 * 119.99808 * 22.36687 * 15 13 12 17 17 C 1.38811 * 120.00216 * 202.37039 * 15 13 12 18 18 N 1.31615 * 119.99749 * 11.33492 * 17 15 13 19 19 Si 1.86799 * 120.00160 * 191.33496 * 17 15 13 20 20 H 1.48505 * 109.46763 * 59.99890 * 19 17 15 21 21 H 1.48496 * 109.47180 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47151 * 300.00007 * 19 17 15 23 23 S 1.76182 * 125.46978 * 179.97438 * 8 7 6 24 24 C 1.39552 * 119.71553 * 0.28037 * 7 6 5 25 25 C 1.37971 * 119.85391 * 359.46514 * 24 7 6 26 26 H 1.09004 * 109.47035 * 59.99013 * 1 2 3 27 27 H 1.08993 * 109.47333 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46593 * 300.00101 * 1 2 3 29 29 H 1.09007 * 109.46593 * 239.99899 * 2 1 3 30 30 H 1.08993 * 109.47587 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47238 * 300.00810 * 3 2 1 32 32 H 1.09006 * 109.46746 * 60.00020 * 3 2 1 33 33 H 1.07995 * 119.92629 * 359.97401 * 5 4 2 34 34 H 1.07993 * 120.07464 * 180.02562 * 6 5 4 35 35 H 1.07998 * 122.07723 * 179.97438 * 10 9 8 36 36 H 1.08995 * 109.47265 * 209.98358 * 12 11 10 37 37 H 1.08997 * 109.46554 * 329.98307 * 12 11 10 38 38 H 1.09000 * 109.46956 * 94.20437 * 14 13 12 39 39 H 1.08992 * 109.47121 * 214.19981 * 14 13 12 40 40 H 1.08994 * 109.47102 * 334.20306 * 14 13 12 41 41 H 0.97006 * 119.99768 * 180.02562 * 18 17 15 42 42 H 1.08000 * 120.07191 * 179.72559 * 24 7 6 43 43 H 1.08001 * 119.92931 * 180.23610 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7106 1.2303 5 6 2.8275 -1.8352 1.0999 6 6 3.2910 -2.4900 2.2223 7 6 2.9566 -2.0153 3.4913 8 6 3.4504 -2.7118 4.6985 9 7 4.2019 -3.7752 4.7031 10 6 4.5446 -4.2590 5.8748 11 6 4.0778 -3.5963 6.9383 12 6 4.3304 -3.9509 8.3811 13 7 5.5406 -3.2691 8.8469 14 6 6.8458 -3.9207 8.7132 15 6 5.4516 -2.0228 9.4072 16 1 4.5184 -1.6891 9.8364 17 6 6.5608 -1.1884 9.4236 18 7 7.6252 -1.4947 8.7126 19 14 6.5428 0.3692 10.4546 20 1 6.3390 0.0152 11.8824 21 1 7.8378 1.0794 10.3012 22 1 5.4374 1.2507 10.0005 23 16 3.1165 -2.2361 6.3617 24 6 2.1498 -0.8835 3.6160 25 6 1.6971 -0.2348 2.4855 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 1.8933 -0.5139 -0.8901 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6768 1.9563 0.8901 33 1 3.0859 -2.2013 0.1173 34 1 3.9120 -3.3675 2.1192 35 1 5.1650 -5.1375 5.9734 36 1 3.4804 -3.6367 8.9867 37 1 4.4627 -5.0290 8.4724 38 1 7.3197 -3.5981 7.7862 39 1 7.4770 -3.6465 9.5584 40 1 6.7119 -5.0023 8.6956 41 1 8.4005 -0.9117 8.7243 42 1 1.8838 -0.5137 4.5952 43 1 1.0758 0.6435 2.5806 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174838284.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:28 Heat of formation + Delta-G solvation = 62.168696 kcal Electronic energy + Delta-G solvation = -22922.739496 eV Core-core repulsion = 19673.154051 eV Total energy + Delta-G solvation = -3249.585445 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.82299 -40.01873 -37.62753 -36.38118 -33.87793 -32.24414 -31.96461 -30.45469 -28.09524 -27.92299 -27.36944 -25.68021 -24.10175 -23.35512 -22.92023 -21.13973 -20.22569 -18.84204 -18.79622 -17.38820 -16.87910 -16.55765 -16.01412 -15.83400 -15.69668 -15.31721 -15.01793 -14.92473 -14.69783 -14.60457 -14.36707 -14.19920 -13.58492 -13.34747 -13.28514 -13.24514 -12.90834 -12.81475 -12.73337 -12.50376 -12.26930 -12.12072 -12.07576 -11.99219 -11.79976 -11.65099 -11.49469 -10.75445 -10.61917 -10.46264 -10.09427 -9.93287 -9.02930 -8.87014 -7.90984 -5.37971 -0.63874 0.42970 0.43304 0.61764 0.90629 1.43769 1.45622 1.51939 1.97954 2.46376 2.84740 3.10447 3.26269 3.70752 3.74197 3.83023 4.02589 4.12155 4.22305 4.26626 4.35440 4.36662 4.45965 4.55113 4.57659 4.76372 4.80765 4.86949 4.92464 4.96838 4.98801 5.05195 5.09428 5.16799 5.26186 5.28640 5.37430 5.44712 5.47746 5.52929 5.56106 5.67633 5.69863 5.97698 6.23045 6.78862 7.05476 7.74195 8.17723 9.11379 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.017172 B = 0.003153 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.172952 B = 8878.203109 C = 9759.048186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.055 4.055 3 C -0.145 4.145 4 C -0.064 4.064 5 C -0.118 4.118 6 C -0.086 4.086 7 C -0.043 4.043 8 C 0.074 3.926 9 N -0.479 5.479 10 C 0.004 3.996 11 C -0.196 4.196 12 C 0.211 3.789 13 N -0.599 5.599 14 C 0.175 3.825 15 C -0.262 4.262 16 H 0.074 0.926 17 C -0.048 4.048 18 N -0.932 5.932 19 Si 0.966 3.034 20 H -0.273 1.273 21 H -0.295 1.295 22 H -0.275 1.275 23 S 0.084 5.916 24 C -0.107 4.107 25 C -0.111 4.111 26 H 0.072 0.928 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.089 0.911 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.150 0.850 34 H 0.125 0.875 35 H 0.177 0.823 36 H 0.066 0.934 37 H 0.094 0.906 38 H -0.002 1.002 39 H 0.025 0.975 40 H 0.038 0.962 41 H 0.249 0.751 42 H 0.124 0.876 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.483 1.335 -16.299 21.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.073 4.073 3 C -0.203 4.203 4 C -0.065 4.065 5 C -0.136 4.136 6 C -0.108 4.108 7 C -0.047 4.047 8 C -0.200 4.200 9 N -0.193 5.193 10 C -0.147 4.147 11 C -0.321 4.321 12 C 0.083 3.917 13 N -0.320 5.320 14 C 0.031 3.969 15 C -0.392 4.392 16 H 0.092 0.908 17 C -0.244 4.244 18 N -0.578 5.578 19 Si 0.794 3.206 20 H -0.198 1.198 21 H -0.221 1.221 22 H -0.201 1.201 23 S 0.340 5.660 24 C -0.128 4.128 25 C -0.128 4.128 26 H 0.091 0.909 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.108 0.892 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.168 0.832 34 H 0.143 0.857 35 H 0.194 0.806 36 H 0.085 0.915 37 H 0.112 0.888 38 H 0.016 0.984 39 H 0.044 0.956 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.142 0.858 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -14.684 1.949 -16.186 21.941 hybrid contribution 1.353 0.010 0.871 1.609 sum -13.331 1.959 -15.315 20.399 Atomic orbital electron populations 1.21863 0.93336 1.02107 1.02751 1.20212 0.96658 0.96156 0.94295 1.21878 1.00890 0.94745 1.02757 1.20337 0.95847 0.94828 0.95531 1.21279 0.97989 0.95620 0.98712 1.21298 0.98696 0.99822 0.90980 1.18026 1.00542 0.96488 0.89653 1.26071 1.01887 0.96199 0.95889 1.66411 1.13119 1.10993 1.28781 1.21530 1.04135 1.03641 0.85436 1.27616 1.02460 0.97915 1.04099 1.19731 0.89855 0.97429 0.84734 1.44447 1.02877 1.17327 1.67348 1.20614 0.85736 0.92070 0.98511 1.19498 0.97872 0.92229 1.29614 0.90806 1.25846 0.97283 1.00975 1.00269 1.70245 1.05777 1.39261 1.42481 0.85360 0.76654 0.79559 0.79075 1.19845 1.22098 1.20074 1.84603 1.48650 1.30861 1.01913 1.21284 0.97109 0.94320 1.00072 1.21071 1.00434 1.00390 0.90953 0.90888 0.92852 0.92336 0.89236 0.93283 0.90799 0.92389 0.83200 0.85720 0.80571 0.91525 0.88828 0.98389 0.95610 0.94336 0.94195 0.85840 0.83366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.01 71.98 0.65 -0.95 16 2 C -0.05 -0.72 3.09 -11.54 -0.04 -0.75 16 3 C -0.15 -1.80 9.00 71.98 0.65 -1.15 16 4 C -0.06 -1.23 4.79 -19.81 -0.09 -1.32 16 5 C -0.12 -2.51 9.65 22.23 0.21 -2.29 16 6 C -0.09 -2.41 9.68 22.52 0.22 -2.19 16 7 C -0.04 -1.38 5.87 -20.09 -0.12 -1.50 16 8 C 0.07 2.78 7.35 87.48 0.64 3.42 16 9 N -0.48 -19.13 10.14 -189.85 -1.93 -21.06 16 10 C 0.00 0.16 11.14 83.74 0.93 1.09 16 11 C -0.20 -7.90 6.17 24.66 0.15 -7.75 16 12 C 0.21 8.40 6.23 85.63 0.53 8.93 16 13 N -0.60 -29.50 2.91 -731.33 -2.13 -31.63 16 14 C 0.18 8.58 9.01 127.77 1.15 9.73 16 15 C -0.26 -14.08 9.67 84.03 0.81 -13.27 16 16 H 0.07 3.84 7.84 -2.91 -0.02 3.82 16 17 C -0.05 -2.66 5.13 84.86 0.44 -2.22 16 18 N -0.93 -55.34 10.59 21.65 0.23 -55.11 16 19 Si 0.97 44.81 29.57 68.60 2.03 46.84 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 21 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 23 S 0.08 3.21 22.40 -56.49 -1.27 1.94 16 24 C -0.11 -2.90 9.61 22.52 0.22 -2.68 16 25 C -0.11 -2.32 8.69 22.23 0.19 -2.13 16 26 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 27 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.06 0.65 7.38 -2.38 -0.02 0.64 16 29 H 0.09 1.00 7.87 -2.38 -0.02 0.98 16 30 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 32 H 0.06 0.72 7.37 -2.38 -0.02 0.71 16 33 H 0.15 2.33 7.94 -2.91 -0.02 2.31 16 34 H 0.12 3.60 7.82 -2.91 -0.02 3.58 16 35 H 0.18 6.25 8.06 -2.91 -0.02 6.22 16 36 H 0.07 2.52 8.03 -2.39 -0.02 2.51 16 37 H 0.09 3.15 7.86 -2.39 -0.02 3.13 16 38 H 0.00 -0.13 7.42 -2.39 -0.02 -0.14 16 39 H 0.03 1.35 7.19 -2.39 -0.02 1.33 16 40 H 0.04 1.55 7.84 -2.39 -0.02 1.53 16 41 H 0.25 14.47 8.31 -92.70 -0.77 13.70 16 42 H 0.12 3.26 7.30 -2.91 -0.02 3.24 16 43 H 0.15 2.35 7.08 -2.91 -0.02 2.32 16 Total: -1.00 -66.33 368.90 4.48 -61.85 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: 0.99 Total: 12.18 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: 6.55 Total: -15.02 kcal Atomic # 7 Polarization: -103.97 SS G_CDS: -3.82 Total: -107.79 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Atomic # 16 Polarization: 3.21 SS G_CDS: -1.27 Total: 1.94 kcal Total: -66.33 4.48 -61.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174838284.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.015 kcal (2) G-P(sol) polarization free energy of solvation -66.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds