Wall clock time and date at job start Tue Mar 31 2020 10:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38186 * 119.96686 * 2 1 4 4 C 1.38132 * 120.13434 * 179.97438 * 3 2 1 5 5 C 1.38930 * 120.05939 * 359.97438 * 4 3 2 6 6 N 1.39949 * 120.03363 * 180.02562 * 5 4 3 7 7 C 1.34772 * 120.00461 * 326.34294 * 6 5 4 8 8 O 1.21593 * 119.99725 * 354.77891 * 7 6 5 9 9 N 1.34770 * 120.00477 * 174.78680 * 7 6 5 10 10 C 1.46507 * 119.99816 * 359.97438 * 9 7 6 11 11 C 1.46498 * 120.00561 * 180.02562 * 9 7 6 12 12 C 1.50699 * 109.47297 * 89.99476 * 11 9 7 13 13 H 1.07998 * 120.00164 * 0.02562 * 12 11 9 14 14 C 1.37882 * 119.99742 * 180.02562 * 12 11 9 15 15 N 1.31509 * 120.00021 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99807 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47065 * 89.99730 * 16 14 12 18 18 H 1.48497 * 109.47316 * 210.00038 * 16 14 12 19 19 H 1.48503 * 109.47122 * 329.99955 * 16 14 12 20 20 C 1.38735 * 119.92400 * 359.81009 * 5 4 3 21 21 C 1.38719 * 119.86594 * 0.42443 * 20 5 4 22 22 N 1.40261 * 120.02666 * 179.80822 * 21 20 5 23 23 C 1.35056 * 127.39233 * 311.16278 * 22 21 20 24 24 N 1.30746 * 107.27547 * 179.97438 * 23 22 21 25 25 N 1.28420 * 110.64387 * 0.02562 * 24 23 22 26 26 N 1.28941 * 110.20587 * 359.97438 * 25 24 23 27 27 H 1.08997 * 109.46886 * 267.61919 * 1 2 3 28 28 H 1.09006 * 109.46753 * 27.60755 * 1 2 3 29 29 H 1.08990 * 109.47346 * 147.61343 * 1 2 3 30 30 H 1.07995 * 119.93130 * 359.97438 * 3 2 1 31 31 H 1.07998 * 119.97034 * 180.02562 * 4 3 2 32 32 H 0.97003 * 119.99703 * 146.34985 * 6 5 4 33 33 H 1.08992 * 109.47228 * 90.00482 * 10 9 7 34 34 H 1.09001 * 109.46765 * 210.00705 * 10 9 7 35 35 H 1.08997 * 109.46754 * 330.00171 * 10 9 7 36 36 H 1.08997 * 109.47461 * 210.00257 * 11 9 7 37 37 H 1.09008 * 109.46671 * 329.99497 * 11 9 7 38 38 H 0.96999 * 120.00062 * 180.02562 * 15 14 12 39 39 H 1.08001 * 120.06280 * 180.23189 * 20 5 4 40 40 H 1.07999 * 126.36668 * 359.96821 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1971 0.0000 4 6 3.5786 1.2012 0.0005 5 6 4.2780 0.0008 0.0016 6 7 5.6775 0.0055 0.0027 7 6 6.3486 0.9789 -0.6441 8 8 5.7422 1.7982 -1.3071 9 7 7.6919 1.0443 -0.5561 10 6 8.4225 0.0574 0.2431 11 6 8.4214 2.1027 -1.2587 12 6 8.5560 3.3033 -0.3578 13 1 8.1401 3.2800 0.6386 14 6 9.2101 4.4314 -0.8057 15 7 9.7170 4.4595 -2.0188 16 14 9.3763 5.9198 0.3108 17 1 10.6293 5.8091 1.1001 18 1 9.4178 7.1545 -0.5132 19 1 8.2139 5.9790 1.2331 20 6 3.5875 -1.2025 0.0061 21 6 2.2003 -1.2030 0.0007 22 7 1.4988 -2.4176 0.0011 23 6 1.7034 -3.4832 -0.8030 24 7 0.8321 -4.3976 -0.4651 25 7 0.0903 -3.9824 0.4975 26 7 0.4319 -2.7869 0.8392 27 1 -0.3633 -0.0427 1.0268 28 1 -0.3633 0.9107 -0.4763 29 1 -0.3633 -0.8677 -0.5504 30 1 1.6556 2.1314 -0.0004 31 1 4.1154 2.1383 0.0010 32 1 6.1644 -0.6920 0.4689 33 1 8.6873 -0.7938 -0.3841 34 1 9.3299 0.5119 0.6408 35 1 7.7939 -0.2800 1.0671 36 1 9.4125 1.7409 -1.5324 37 1 7.8757 2.3838 -2.1595 38 1 10.1775 5.2530 -2.3338 39 1 4.1289 -2.1370 0.0108 40 1 2.4482 -3.5648 -1.5808 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176548504.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:47 Heat of formation + Delta-G solvation = 135.690766 kcal Electronic energy + Delta-G solvation = -25434.172894 eV Core-core repulsion = 21673.775142 eV Total energy + Delta-G solvation = -3760.397752 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.41666 -40.64817 -39.15334 -35.92415 -34.93957 -34.54861 -32.80661 -32.50230 -31.55601 -30.43336 -28.04493 -26.92655 -25.81168 -24.96853 -23.49486 -23.18456 -22.56005 -21.40143 -19.91569 -18.65809 -17.73612 -16.90973 -16.65858 -16.48573 -16.10036 -15.70462 -15.51736 -14.88161 -14.71707 -14.27432 -14.22778 -13.82062 -13.58894 -13.30024 -13.05970 -12.85461 -12.65691 -12.37309 -12.29639 -12.07337 -12.02783 -11.80374 -11.38859 -11.30297 -11.18811 -11.00941 -10.70710 -10.68295 -10.27504 -10.17661 -9.78520 -9.53035 -9.13007 -8.53335 -8.21959 -7.79632 -6.14260 -4.19632 0.31257 0.98856 1.13632 1.56267 2.01284 2.90366 3.21603 3.23421 3.30835 3.34621 3.73569 3.87373 4.21159 4.30097 4.38345 4.46449 4.56391 4.71685 4.86349 5.00698 5.11116 5.18934 5.20880 5.28363 5.35656 5.39219 5.41258 5.68436 5.71945 5.85321 5.96609 6.07995 6.09755 6.21269 6.42918 6.58626 6.84560 7.18737 7.31827 7.47077 7.82164 8.10633 8.15006 8.34322 8.79688 9.00140 9.45998 10.93707 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.025669 B = 0.002758 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.553108 B =10151.585184 C =10828.013870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.081 4.081 3 C -0.084 4.084 4 C -0.094 4.094 5 C 0.199 3.801 6 N -0.695 5.695 7 C 0.697 3.303 8 O -0.565 6.565 9 N -0.608 5.608 10 C 0.081 3.919 11 C 0.259 3.741 12 C -0.530 4.530 13 H 0.057 0.943 14 C 0.062 3.938 15 N -0.894 5.894 16 Si 0.899 3.101 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.274 1.274 20 C -0.143 4.143 21 C 0.126 3.874 22 N -0.320 5.320 23 C 0.230 3.770 24 N -0.336 5.336 25 N -0.045 5.045 26 N -0.073 5.073 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.140 0.860 31 H 0.153 0.847 32 H 0.404 0.596 33 H 0.047 0.953 34 H 0.081 0.919 35 H 0.051 0.949 36 H 0.036 0.964 37 H 0.046 0.954 38 H 0.264 0.736 39 H 0.134 0.866 40 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.582 -12.636 4.090 17.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.084 4.084 3 C -0.103 4.103 4 C -0.115 4.115 5 C 0.101 3.899 6 N -0.345 5.345 7 C 0.399 3.601 8 O -0.441 6.441 9 N -0.343 5.343 10 C -0.064 4.064 11 C 0.140 3.860 12 C -0.569 4.569 13 H 0.076 0.924 14 C -0.140 4.140 15 N -0.532 5.532 16 Si 0.726 3.274 17 H -0.206 1.206 18 H -0.210 1.210 19 H -0.199 1.199 20 C -0.167 4.167 21 C 0.034 3.966 22 N -0.111 5.111 23 C -0.067 4.067 24 N -0.186 5.186 25 N -0.040 5.040 26 N -0.058 5.058 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.158 0.842 31 H 0.171 0.829 32 H 0.241 0.759 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.152 0.848 40 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -12.857 -12.429 4.203 18.370 hybrid contribution 1.422 0.924 0.387 1.739 sum -11.435 -11.505 4.590 16.858 Atomic orbital electron populations 1.20748 0.90117 1.02614 1.03134 1.19723 0.96709 0.91023 1.00967 1.20903 0.93534 0.97066 0.98830 1.21618 0.93935 0.98946 0.96959 1.17146 0.82814 0.92563 0.97402 1.43024 1.03719 1.31045 1.56675 1.15907 0.82640 0.81228 0.80350 1.90923 1.66918 1.41574 1.44648 1.47538 1.03470 1.31870 1.51419 1.21640 0.98213 0.92179 0.94329 1.19303 0.90842 0.83147 0.92736 1.21416 1.36177 0.98793 1.00483 0.92439 1.24927 0.95319 0.98557 0.95210 1.69920 1.37116 1.29599 1.16589 0.86488 0.78377 0.82078 0.80421 1.20623 1.21026 1.19885 1.20520 0.91251 0.98112 1.06794 1.16820 0.89380 0.81248 1.09144 1.48917 1.24911 1.12823 1.24410 1.27543 0.99566 0.83103 0.96518 1.74483 1.06446 1.26125 1.11522 1.78062 1.16860 1.02856 1.06211 1.82741 1.00762 1.09252 1.13020 0.90171 0.90846 0.92369 0.84210 0.82919 0.75854 0.93465 0.90024 0.93032 0.94634 0.93547 0.92589 0.84793 0.74616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 9.01 36.01 0.32 -0.68 16 2 C -0.08 -0.85 5.90 -104.41 -0.62 -1.47 16 3 C -0.08 -0.92 9.68 -39.64 -0.38 -1.31 16 4 C -0.09 -1.27 8.65 -39.36 -0.34 -1.61 16 5 C 0.20 2.52 6.27 -83.71 -0.52 1.99 16 6 N -0.70 -9.37 5.17 -14.24 -0.07 -9.44 16 7 C 0.70 13.09 8.01 -86.93 -0.70 12.39 16 8 O -0.56 -12.87 13.62 5.28 0.07 -12.80 16 9 N -0.61 -11.66 2.86 -188.74 -0.54 -12.20 16 10 C 0.08 1.09 10.16 59.85 0.61 1.70 16 11 C 0.26 6.31 5.16 -5.19 -0.03 6.28 16 12 C -0.53 -14.18 9.39 -34.44 -0.32 -14.50 16 13 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -25.48 13.29 55.43 0.74 -24.74 16 16 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 20 C -0.14 -1.44 9.61 -39.22 -0.38 -1.81 16 21 C 0.13 1.32 6.29 -83.60 -0.53 0.79 16 22 N -0.32 -3.36 3.10 -11.76 -0.04 -3.40 16 23 C 0.23 2.03 12.57 -90.16 -1.13 0.90 16 24 N -0.34 -3.93 12.15 29.64 0.36 -3.57 16 25 N -0.04 -0.59 13.39 60.35 0.81 0.22 16 26 N -0.07 -0.91 12.40 60.35 0.75 -0.16 16 27 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.56 8.07 -51.93 -0.42 0.14 16 29 H 0.06 0.59 7.06 -51.93 -0.37 0.22 16 30 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 31 H 0.15 2.49 6.43 -52.49 -0.34 2.15 16 32 H 0.40 4.11 6.63 -40.82 -0.27 3.84 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 1.17 8.07 -51.93 -0.42 0.75 16 35 H 0.05 0.54 6.45 -51.93 -0.33 0.20 16 36 H 0.04 0.87 8.07 -51.93 -0.42 0.46 16 37 H 0.05 1.28 7.42 -51.92 -0.39 0.90 16 38 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.24 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 347.75 15.07 5.24 5.24 Total: -1.00 -33.40 347.75 -6.43 -39.82 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -4.61 Total: 0.80 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: -4.11 Total: 4.28 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: 2.00 Total: -53.30 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.07 Total: -12.80 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.40 -6.43 -39.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176548504.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.515 kcal (2) G-P(sol) polarization free energy of solvation -33.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds