Wall clock time and date at job start Tue Mar 31 2020 11:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30733 * 126.36240 * 2 1 4 4 N 1.28424 * 110.64596 * 179.97438 * 3 2 1 5 5 N 1.28953 * 110.20400 * 359.74001 * 4 3 2 6 6 N 1.35068 * 126.36381 * 179.97438 * 2 1 3 7 7 C 1.40274 * 127.38659 * 359.97438 * 6 2 1 8 8 C 1.38887 * 120.02678 * 324.99747 * 7 6 2 9 9 C 1.38155 * 120.06932 * 180.02562 * 8 7 6 10 10 C 1.38177 * 120.13745 * 0.02562 * 9 8 7 11 11 C 1.38888 * 120.05667 * 359.97438 * 10 9 8 12 12 N 1.39947 * 120.03406 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00128 * 324.87757 * 12 11 10 14 14 O 1.21584 * 120.00005 * 4.58379 * 13 12 11 15 15 N 1.34777 * 120.00071 * 184.58071 * 13 12 11 16 16 C 1.46507 * 119.99682 * 0.02562 * 15 13 12 17 17 C 1.46500 * 120.00082 * 179.97438 * 15 13 12 18 18 C 1.50704 * 109.46711 * 90.00189 * 17 15 13 19 19 H 1.07994 * 120.00194 * 0.02562 * 18 17 15 20 20 C 1.37877 * 119.99502 * 179.97438 * 18 17 15 21 21 N 1.31516 * 119.99605 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 120.00383 * 0.02562 * 20 18 17 23 23 H 1.48508 * 109.47141 * 89.99515 * 22 20 18 24 24 H 1.48501 * 109.47160 * 209.99537 * 22 20 18 25 25 H 1.48499 * 109.47335 * 329.99844 * 22 20 18 26 26 C 1.38678 * 120.02846 * 145.01994 * 7 6 2 27 27 H 1.08999 * 109.47790 * 270.02543 * 1 2 3 28 28 H 1.09000 * 109.47197 * 30.02793 * 1 2 3 29 29 H 1.09004 * 109.47238 * 150.02899 * 1 2 3 30 30 H 1.07999 * 119.96884 * 359.74718 * 8 7 6 31 31 H 1.07995 * 119.92698 * 179.97438 * 9 8 7 32 32 H 1.07992 * 119.96909 * 179.97438 * 10 9 8 33 33 H 0.96998 * 119.99955 * 144.87707 * 12 11 10 34 34 H 1.08998 * 109.46960 * 90.00210 * 16 15 13 35 35 H 1.09002 * 109.46545 * 209.99849 * 16 15 13 36 36 H 1.09000 * 109.46909 * 329.99367 * 16 15 13 37 37 H 1.09001 * 109.46983 * 210.00286 * 17 15 13 38 38 H 1.08997 * 109.47050 * 330.00227 * 17 15 13 39 39 H 0.97005 * 119.99581 * 180.02562 * 21 20 18 40 40 H 1.07998 * 120.06725 * 359.97438 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2821 1.0528 0.0000 4 7 3.5183 0.7049 0.0005 5 7 3.6192 -0.5807 0.0064 6 7 2.3078 -1.0877 0.0005 7 6 1.9153 -2.4344 0.0016 8 6 0.7754 -2.8255 0.6920 9 6 0.3883 -4.1517 0.6941 10 6 1.1336 -5.0930 0.0103 11 6 2.2744 -4.7079 -0.6820 12 7 3.0286 -5.6616 -1.3749 13 6 3.1534 -6.9099 -0.8822 14 8 2.5439 -7.2318 0.1194 15 7 3.9538 -7.8013 -1.4997 16 6 4.6887 -7.4131 -2.7062 17 6 4.0899 -9.1579 -0.9637 18 6 3.0436 -10.0493 -1.5815 19 1 2.3472 -9.6457 -2.3016 20 6 2.9760 -11.3803 -1.2281 21 7 2.0626 -12.1581 -1.7669 22 14 4.1810 -12.0785 0.0169 23 1 3.6150 -11.9433 1.3832 24 1 4.4226 -13.5135 -0.2791 25 1 5.4631 -11.3337 -0.0636 26 6 2.6653 -3.3764 -0.6863 27 1 -0.3635 0.0005 1.0276 28 1 -0.3633 0.8897 -0.5143 29 1 -0.3634 -0.8903 -0.5134 30 1 0.1935 -2.0929 1.2316 31 1 -0.4982 -4.4533 1.2321 32 1 0.8288 -6.1290 0.0141 33 1 3.4616 -5.4243 -2.2099 34 1 5.6612 -7.0092 -2.4251 35 1 4.8283 -8.2865 -3.3432 36 1 4.1230 -6.6550 -3.2479 37 1 5.0816 -9.5440 -1.1997 38 1 3.9564 -9.1364 0.1178 39 1 2.0148 -13.0944 -1.5179 40 1 3.5519 -3.0744 -1.2239 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176549158.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:59 Heat of formation + Delta-G solvation = 139.763224 kcal Electronic energy + Delta-G solvation = -25358.010364 eV Core-core repulsion = 21597.789207 eV Total energy + Delta-G solvation = -3760.221157 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.45766 -40.64136 -39.06193 -36.02153 -35.05114 -34.32037 -33.63104 -32.57692 -30.77392 -29.79126 -29.08090 -28.30465 -26.12668 -24.93271 -23.68374 -22.56094 -22.34489 -21.39669 -19.81912 -18.66859 -17.74078 -17.07721 -17.03595 -16.61884 -16.16226 -15.51862 -15.35713 -14.91238 -14.82740 -14.26548 -14.06007 -13.89281 -13.69166 -13.62567 -13.21560 -13.04168 -12.87133 -12.59797 -12.49340 -12.24536 -12.08923 -12.01936 -11.60673 -11.36215 -11.26728 -11.05824 -10.61104 -10.46341 -10.40314 -10.21810 -9.71109 -9.51268 -9.05852 -8.66853 -8.38218 -7.84283 -6.16770 -4.16447 0.20575 0.96697 1.26113 1.49052 1.96707 2.83429 3.23010 3.24025 3.29953 3.32222 3.55635 3.68217 4.04173 4.15780 4.32387 4.44254 4.56137 4.68317 4.80806 4.97315 5.01082 5.04286 5.11076 5.15884 5.19823 5.26317 5.34207 5.42136 5.65059 5.83086 5.92557 5.98268 6.09520 6.18339 6.40246 6.42094 6.74951 6.82829 7.06265 7.27404 7.51004 8.14859 8.22483 8.37514 8.84268 8.91639 9.42796 10.96416 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.028489 B = 0.002670 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.594091 B =10483.912474 C =10955.681667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.250 3.750 3 N -0.334 5.334 4 N -0.040 5.040 5 N -0.078 5.078 6 N -0.322 5.322 7 C 0.135 3.865 8 C -0.140 4.140 9 C -0.079 4.079 10 C -0.103 4.103 11 C 0.201 3.799 12 N -0.694 5.694 13 C 0.701 3.299 14 O -0.566 6.566 15 N -0.604 5.604 16 C 0.081 3.919 17 C 0.230 3.770 18 C -0.532 4.532 19 H 0.074 0.926 20 C 0.073 3.927 21 N -0.896 5.896 22 Si 0.876 3.124 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.266 1.266 26 C -0.133 4.133 27 H 0.102 0.898 28 H 0.106 0.894 29 H 0.096 0.904 30 H 0.133 0.867 31 H 0.142 0.858 32 H 0.159 0.841 33 H 0.406 0.594 34 H 0.049 0.951 35 H 0.083 0.917 36 H 0.053 0.947 37 H 0.034 0.966 38 H 0.040 0.960 39 H 0.265 0.735 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.181 20.504 0.858 20.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.026 4.026 3 N -0.186 5.186 4 N -0.034 5.034 5 N -0.063 5.063 6 N -0.113 5.113 7 C 0.043 3.957 8 C -0.162 4.162 9 C -0.098 4.098 10 C -0.124 4.124 11 C 0.103 3.897 12 N -0.343 5.343 13 C 0.403 3.597 14 O -0.442 6.442 15 N -0.338 5.338 16 C -0.063 4.063 17 C 0.109 3.891 18 C -0.571 4.571 19 H 0.093 0.907 20 C -0.129 4.129 21 N -0.534 5.534 22 Si 0.703 3.297 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.190 1.190 26 C -0.157 4.157 27 H 0.120 0.880 28 H 0.124 0.876 29 H 0.114 0.886 30 H 0.151 0.849 31 H 0.160 0.840 32 H 0.176 0.824 33 H 0.243 0.757 34 H 0.067 0.933 35 H 0.102 0.898 36 H 0.072 0.928 37 H 0.052 0.948 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.298 20.650 1.547 20.835 hybrid contribution 0.283 -1.018 0.061 1.058 sum -2.015 19.632 1.608 19.801 Atomic orbital electron populations 1.20681 0.82096 1.06174 1.05352 1.25860 0.98290 0.82305 0.96122 1.74457 0.96369 1.24806 1.22967 1.78038 1.11398 1.04129 1.09863 1.82731 0.97143 1.04797 1.21602 1.48888 1.05701 1.06646 1.50062 1.17066 0.97632 0.78562 1.02466 1.20964 0.96677 0.97637 1.00934 1.20972 0.99833 0.90933 0.98054 1.21795 0.91940 1.02343 0.96345 1.17258 0.90588 0.87098 0.94728 1.42949 1.54442 1.10486 1.26443 1.15822 0.80891 0.79547 0.83407 1.90891 1.49168 1.77497 1.26598 1.47153 1.45747 1.13221 1.27702 1.21665 0.95299 1.01432 0.87863 1.19669 0.97347 0.76441 0.95645 1.21312 1.16076 0.93602 1.26088 0.90744 1.24845 0.95430 0.96773 0.95883 1.69894 1.33861 1.06285 1.43357 0.86853 0.81917 0.78537 0.82378 1.19826 1.21014 1.19047 1.20569 1.00922 0.91531 1.02642 0.87979 0.87559 0.88559 0.84878 0.84013 0.82399 0.75651 0.93268 0.89805 0.92809 0.94832 0.94249 0.92468 0.84515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.38 8.74 36.00 0.31 -0.06 16 2 C 0.25 2.46 7.97 -155.20 -1.24 1.22 16 3 N -0.33 -4.21 12.15 32.75 0.40 -3.81 16 4 N -0.04 -0.57 13.39 60.35 0.81 0.24 16 5 N -0.08 -1.09 13.75 60.35 0.83 -0.26 16 6 N -0.32 -3.70 3.78 -7.98 -0.03 -3.73 16 7 C 0.13 1.44 6.35 -83.59 -0.53 0.91 16 8 C -0.14 -1.22 8.41 -39.37 -0.33 -1.55 16 9 C -0.08 -0.76 10.03 -39.63 -0.40 -1.15 16 10 C -0.10 -1.37 8.69 -39.36 -0.34 -1.71 16 11 C 0.20 2.65 6.30 -83.71 -0.53 2.12 16 12 N -0.69 -9.79 5.21 -14.24 -0.07 -9.87 16 13 C 0.70 13.35 8.12 -86.92 -0.71 12.64 16 14 O -0.57 -12.80 13.35 5.29 0.07 -12.73 16 15 N -0.60 -11.58 2.86 -188.73 -0.54 -12.12 16 16 C 0.08 1.12 10.24 59.85 0.61 1.73 16 17 C 0.23 5.32 4.23 -5.19 -0.02 5.29 16 18 C -0.53 -14.59 9.94 -34.44 -0.34 -14.94 16 19 H 0.07 2.24 8.06 -52.49 -0.42 1.82 16 20 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 21 N -0.90 -26.76 13.96 55.43 0.77 -25.99 16 22 Si 0.88 20.80 27.47 -169.99 -4.67 16.13 16 23 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.27 -5.92 6.54 56.52 0.37 -5.55 16 26 C -0.13 -1.54 9.74 -39.22 -0.38 -1.92 16 27 H 0.10 0.26 7.84 -51.93 -0.41 -0.14 16 28 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.10 0.34 7.03 -51.93 -0.37 -0.03 16 30 H 0.13 0.77 6.28 -52.49 -0.33 0.44 16 31 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 32 H 0.16 2.54 6.22 -52.49 -0.33 2.21 16 33 H 0.41 4.46 6.52 -40.82 -0.27 4.19 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 36 H 0.05 0.58 6.30 -51.93 -0.33 0.25 16 37 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 38 H 0.04 0.98 6.85 -51.93 -0.36 0.62 16 39 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.14 1.49 8.06 -52.49 -0.42 1.06 16 LS Contribution 341.90 15.07 5.15 5.15 Total: -1.00 -35.34 341.90 -5.71 -41.05 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -4.45 Total: 1.37 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: -3.99 Total: 4.56 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: 2.17 Total: -55.54 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.07 Total: -12.73 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.67 Total: 16.13 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.34 -5.71 -41.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176549158.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.814 kcal (2) G-P(sol) polarization free energy of solvation -35.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds