Wall clock time and date at job start Tue Mar 31 2020 11:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30733 * 126.36240 * 2 1 4 4 N 1.28424 * 110.64596 * 179.97438 * 3 2 1 5 5 N 1.28953 * 110.20400 * 359.74001 * 4 3 2 6 6 N 1.35068 * 126.36381 * 179.97438 * 2 1 3 7 7 C 1.40274 * 127.38659 * 359.97438 * 6 2 1 8 8 C 1.38887 * 120.02678 * 324.99747 * 7 6 2 9 9 C 1.38155 * 120.06932 * 180.02562 * 8 7 6 10 10 C 1.38177 * 120.13745 * 0.02562 * 9 8 7 11 11 C 1.38888 * 120.05667 * 359.97438 * 10 9 8 12 12 N 1.39947 * 120.03406 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00128 * 324.87757 * 12 11 10 14 14 O 1.21584 * 120.00005 * 4.58379 * 13 12 11 15 15 N 1.34777 * 120.00071 * 184.58071 * 13 12 11 16 16 C 1.46507 * 119.99682 * 0.02562 * 15 13 12 17 17 C 1.46500 * 120.00082 * 179.97438 * 15 13 12 18 18 C 1.50704 * 109.46711 * 90.00189 * 17 15 13 19 19 H 1.07994 * 120.00194 * 0.02562 * 18 17 15 20 20 C 1.37877 * 119.99502 * 179.97438 * 18 17 15 21 21 N 1.31516 * 119.99605 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 120.00383 * 0.02562 * 20 18 17 23 23 H 1.48508 * 109.47141 * 89.99515 * 22 20 18 24 24 H 1.48501 * 109.47160 * 209.99537 * 22 20 18 25 25 H 1.48499 * 109.47335 * 329.99844 * 22 20 18 26 26 C 1.38678 * 120.02846 * 145.01994 * 7 6 2 27 27 H 1.08999 * 109.47790 * 270.02543 * 1 2 3 28 28 H 1.09000 * 109.47197 * 30.02793 * 1 2 3 29 29 H 1.09004 * 109.47238 * 150.02899 * 1 2 3 30 30 H 1.07999 * 119.96884 * 359.74718 * 8 7 6 31 31 H 1.07995 * 119.92698 * 179.97438 * 9 8 7 32 32 H 1.07992 * 119.96909 * 179.97438 * 10 9 8 33 33 H 0.96998 * 119.99955 * 144.87707 * 12 11 10 34 34 H 1.08998 * 109.46960 * 90.00210 * 16 15 13 35 35 H 1.09002 * 109.46545 * 209.99849 * 16 15 13 36 36 H 1.09000 * 109.46909 * 329.99367 * 16 15 13 37 37 H 1.09001 * 109.46983 * 210.00286 * 17 15 13 38 38 H 1.08997 * 109.47050 * 330.00227 * 17 15 13 39 39 H 0.97005 * 119.99581 * 180.02562 * 21 20 18 40 40 H 1.07998 * 120.06725 * 359.97438 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2821 1.0528 0.0000 4 7 3.5183 0.7049 0.0005 5 7 3.6192 -0.5807 0.0064 6 7 2.3078 -1.0877 0.0005 7 6 1.9153 -2.4344 0.0016 8 6 0.7754 -2.8255 0.6920 9 6 0.3883 -4.1517 0.6941 10 6 1.1336 -5.0930 0.0103 11 6 2.2744 -4.7079 -0.6820 12 7 3.0286 -5.6616 -1.3749 13 6 3.1534 -6.9099 -0.8822 14 8 2.5439 -7.2318 0.1194 15 7 3.9538 -7.8013 -1.4997 16 6 4.6887 -7.4131 -2.7062 17 6 4.0899 -9.1579 -0.9637 18 6 3.0436 -10.0493 -1.5815 19 1 2.3472 -9.6457 -2.3016 20 6 2.9760 -11.3803 -1.2281 21 7 2.0626 -12.1581 -1.7669 22 14 4.1810 -12.0785 0.0169 23 1 3.6150 -11.9433 1.3832 24 1 4.4226 -13.5135 -0.2791 25 1 5.4631 -11.3337 -0.0636 26 6 2.6653 -3.3764 -0.6863 27 1 -0.3635 0.0005 1.0276 28 1 -0.3633 0.8897 -0.5143 29 1 -0.3634 -0.8903 -0.5134 30 1 0.1935 -2.0929 1.2316 31 1 -0.4982 -4.4533 1.2321 32 1 0.8288 -6.1290 0.0141 33 1 3.4616 -5.4243 -2.2099 34 1 5.6612 -7.0092 -2.4251 35 1 4.8283 -8.2865 -3.3432 36 1 4.1230 -6.6550 -3.2479 37 1 5.0816 -9.5440 -1.1997 38 1 3.9564 -9.1364 0.1178 39 1 2.0148 -13.0944 -1.5179 40 1 3.5519 -3.0744 -1.2239 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176549158.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:58 Heat of formation + Delta-G solvation = 114.876201 kcal Electronic energy + Delta-G solvation = -25359.089546 eV Core-core repulsion = 21597.789207 eV Total energy + Delta-G solvation = -3761.300339 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.139 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.33815 -41.84628 -40.17006 -37.18790 -36.48158 -35.44616 -34.57049 -34.39663 -31.71804 -31.00572 -29.84643 -29.68318 -27.47487 -25.83289 -25.08153 -23.79015 -23.27503 -22.42114 -21.11966 -19.70311 -19.14696 -19.05576 -17.92073 -17.53372 -17.37807 -16.75612 -16.45201 -16.18564 -16.01411 -15.54315 -15.17782 -14.95885 -14.79082 -14.48305 -14.17644 -14.10753 -13.93904 -13.83588 -13.69648 -13.38890 -13.24925 -13.07247 -12.89529 -12.76712 -12.44428 -12.22795 -12.16409 -12.04595 -11.74488 -11.47787 -11.28715 -11.04679 -10.81699 -9.95641 -9.63412 -9.17684 -8.33012 -6.38134 -0.65538 0.09144 0.36666 0.66068 1.09797 1.34911 1.38863 1.46636 1.60429 2.02781 2.32033 2.56373 2.87045 2.95935 3.02519 3.31457 3.67201 3.73562 3.92711 4.10101 4.13325 4.20139 4.24455 4.37412 4.49607 4.57519 4.57760 4.67532 4.71299 4.85839 4.90304 4.94356 5.03858 5.16162 5.21302 5.29918 5.44113 5.47951 5.51263 5.83059 5.89201 6.25424 6.63181 6.88867 7.23219 7.24541 7.48809 8.83777 Molecular weight = 316.14amu Principal moments of inertia in cm(-1) A = 0.028489 B = 0.002670 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.594091 B =10483.912474 C =10955.681667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.264 3.736 3 N -0.358 5.358 4 N -0.060 5.060 5 N -0.107 5.107 6 N -0.326 5.326 7 C 0.129 3.871 8 C -0.115 4.115 9 C -0.067 4.067 10 C -0.125 4.125 11 C 0.178 3.822 12 N -0.678 5.678 13 C 0.697 3.303 14 O -0.611 6.611 15 N -0.615 5.615 16 C 0.075 3.925 17 C 0.239 3.761 18 C -0.535 4.535 19 H 0.030 0.970 20 C 0.013 3.987 21 N -0.945 5.945 22 Si 0.946 3.054 23 H -0.276 1.276 24 H -0.277 1.277 25 H -0.237 1.237 26 C -0.129 4.129 27 H 0.132 0.868 28 H 0.122 0.878 29 H 0.112 0.888 30 H 0.174 0.826 31 H 0.172 0.828 32 H 0.123 0.877 33 H 0.420 0.580 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.055 0.945 38 H 0.023 0.977 39 H 0.268 0.732 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.230 22.501 1.796 22.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.011 4.011 3 N -0.210 5.210 4 N -0.054 5.054 5 N -0.091 5.091 6 N -0.117 5.117 7 C 0.037 3.963 8 C -0.137 4.137 9 C -0.086 4.086 10 C -0.146 4.146 11 C 0.081 3.919 12 N -0.329 5.329 13 C 0.398 3.602 14 O -0.490 6.490 15 N -0.349 5.349 16 C -0.067 4.067 17 C 0.116 3.884 18 C -0.574 4.574 19 H 0.048 0.952 20 C -0.186 4.186 21 N -0.585 5.585 22 Si 0.769 3.231 23 H -0.201 1.201 24 H -0.203 1.203 25 H -0.160 1.160 26 C -0.152 4.152 27 H 0.150 0.850 28 H 0.140 0.860 29 H 0.131 0.869 30 H 0.191 0.809 31 H 0.189 0.811 32 H 0.141 0.859 33 H 0.260 0.740 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.073 0.927 38 H 0.041 0.959 39 H 0.077 0.923 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.327 22.721 2.432 22.969 hybrid contribution 0.127 -1.492 -0.281 1.524 sum -2.199 21.229 2.151 21.450 Atomic orbital electron populations 1.21100 0.78109 1.07791 1.07640 1.26836 0.99958 0.80945 0.93368 1.74411 0.96204 1.26166 1.24192 1.78014 1.12541 1.04434 1.10421 1.82675 0.98820 1.04824 1.22813 1.48908 1.05310 1.07094 1.50397 1.17258 0.98192 0.78216 1.02648 1.21323 0.95509 0.97748 0.99075 1.21238 0.99961 0.90590 0.96813 1.21686 0.93183 1.01586 0.98171 1.17355 0.91062 0.87409 0.96039 1.42604 1.54369 1.09015 1.26868 1.16009 0.80380 0.80754 0.83019 1.90854 1.50765 1.78726 1.28666 1.47121 1.46523 1.11972 1.29310 1.21958 0.96691 1.02023 0.86052 1.19322 0.96624 0.77995 0.94420 1.21543 1.16224 0.94489 1.25100 0.95208 1.25812 0.97489 0.97205 0.98057 1.70048 1.36209 1.06821 1.45429 0.85738 0.80396 0.78125 0.78818 1.20141 1.20276 1.16029 1.20523 1.01154 0.90835 1.02660 0.85003 0.85953 0.86941 0.80889 0.81088 0.85927 0.73955 0.90188 0.90607 0.89980 0.92697 0.95879 0.92282 0.84207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.38 8.74 71.23 0.62 0.24 16 2 C 0.26 4.42 7.97 138.05 1.10 5.52 16 3 N -0.36 -8.42 12.15 -50.30 -0.61 -9.03 16 4 N -0.06 -1.66 13.39 37.02 0.50 -1.17 16 5 N -0.11 -2.88 13.75 37.02 0.51 -2.37 16 6 N -0.33 -6.76 3.78 -179.17 -0.68 -7.44 16 7 C 0.13 2.44 6.35 38.05 0.24 2.68 16 8 C -0.12 -1.56 8.41 22.41 0.19 -1.37 16 9 C -0.07 -1.12 10.03 22.24 0.22 -0.90 16 10 C -0.13 -3.30 8.69 22.41 0.19 -3.11 16 11 C 0.18 4.63 6.30 38.13 0.24 4.87 16 12 N -0.68 -19.12 5.21 -317.23 -1.65 -20.78 16 13 C 0.70 27.07 8.12 179.05 1.45 28.52 16 14 O -0.61 -28.81 13.35 -3.98 -0.05 -28.86 16 15 N -0.62 -23.67 2.86 -869.29 -2.48 -26.15 16 16 C 0.07 1.96 10.24 127.77 1.31 3.27 16 17 C 0.24 11.12 4.23 85.63 0.36 11.48 16 18 C -0.53 -30.33 9.94 25.60 0.25 -30.08 16 19 H 0.03 1.90 8.06 -2.91 -0.02 1.87 16 20 C 0.01 0.72 5.47 84.65 0.46 1.18 16 21 N -0.94 -58.36 13.96 21.45 0.30 -58.06 16 22 Si 0.95 43.06 27.47 68.60 1.88 44.95 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 24 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 25 H -0.24 -9.62 6.54 99.48 0.65 -8.97 16 26 C -0.13 -2.81 9.74 22.50 0.22 -2.59 16 27 H 0.13 -0.09 7.84 -2.39 -0.02 -0.11 16 28 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.11 0.20 7.03 -2.38 -0.02 0.19 16 30 H 0.17 0.97 6.28 -2.91 -0.02 0.95 16 31 H 0.17 1.84 8.06 -2.91 -0.02 1.82 16 32 H 0.12 4.19 6.22 -2.91 -0.02 4.17 16 33 H 0.42 8.86 6.52 -92.71 -0.60 8.26 16 34 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.08 2.12 8.07 -2.39 -0.02 2.10 16 36 H 0.08 1.64 6.30 -2.39 -0.02 1.63 16 37 H 0.06 2.32 7.13 -2.39 -0.02 2.31 16 38 H 0.02 1.15 6.85 -2.39 -0.02 1.14 16 39 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 40 H 0.14 2.91 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -82.94 341.90 5.02 -77.91 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 0.44 Total: 11.28 kcal Atomic # 6 Polarization: 12.85 SS G_CDS: 6.87 Total: 19.72 kcal Atomic # 7 Polarization: -120.88 SS G_CDS: -4.12 Total: -125.00 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.05 Total: -28.86 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 1.88 Total: 44.95 kcal Total: -82.94 5.02 -77.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176549158.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.789 kcal (2) G-P(sol) polarization free energy of solvation -82.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds