Wall clock time and date at job start Tue Mar 31 2020 10:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38350 * 119.85773 * 2 1 4 4 C 1.37965 * 120.14497 * 180.02562 * 3 2 1 5 5 C 1.39547 * 119.85558 * 359.97438 * 4 3 2 6 6 C 1.47863 * 120.14421 * 179.97438 * 5 4 3 7 7 N 1.30228 * 125.47616 * 180.27076 * 6 5 4 8 8 C 1.31302 * 117.04460 * 180.22219 * 7 6 5 9 9 C 1.50701 * 122.07870 * 179.75299 * 8 7 6 10 10 N 1.46903 * 109.47044 * 274.71774 * 9 8 7 11 11 C 1.46893 * 110.99757 * 293.95069 * 10 9 8 12 12 C 1.46899 * 110.99939 * 169.99655 * 10 9 8 13 13 H 1.09001 * 109.46901 * 310.00111 * 12 10 9 14 14 C 1.53006 * 109.47163 * 69.99849 * 12 10 9 15 15 C 1.50698 * 109.47365 * 190.00098 * 12 10 9 16 16 H 1.08004 * 119.99528 * 359.97438 * 15 12 10 17 17 C 1.37876 * 120.00356 * 180.02562 * 15 12 10 18 18 N 1.31518 * 119.99554 * 359.97438 * 17 15 12 19 19 Si 1.86790 * 120.00086 * 179.97438 * 17 15 12 20 20 H 1.48506 * 109.47385 * 59.99525 * 19 17 15 21 21 H 1.48500 * 109.47279 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47348 * 299.99599 * 19 17 15 23 23 C 1.33727 * 115.84470 * 359.48387 * 8 7 6 24 24 S 1.76181 * 125.47424 * 359.97218 * 6 5 4 25 25 C 1.39554 * 119.71476 * 0.24495 * 5 4 3 26 26 C 1.37962 * 119.85070 * 359.50040 * 25 5 4 27 27 H 1.09005 * 109.46721 * 90.00357 * 1 2 3 28 28 H 1.08998 * 109.47110 * 210.00302 * 1 2 3 29 29 H 1.08997 * 109.46897 * 330.00468 * 1 2 3 30 30 H 1.07999 * 119.93064 * 359.97438 * 3 2 1 31 31 H 1.08006 * 120.07343 * 179.97438 * 4 3 2 32 32 H 1.08999 * 109.47082 * 154.71376 * 9 8 7 33 33 H 1.09002 * 109.46716 * 34.71437 * 9 8 7 34 34 H 1.08997 * 109.47231 * 296.04832 * 11 10 9 35 35 H 1.09001 * 109.47433 * 56.04681 * 11 10 9 36 36 H 1.09003 * 109.47029 * 176.04435 * 11 10 9 37 37 H 1.09001 * 109.47002 * 59.99764 * 14 12 10 38 38 H 1.08993 * 109.46955 * 180.02562 * 14 12 10 39 39 H 1.09000 * 109.47050 * 300.00030 * 14 12 10 40 40 H 0.97005 * 119.99198 * 180.02562 * 18 17 15 41 41 H 1.08005 * 125.88849 * 180.26878 * 23 8 7 42 42 H 1.07994 * 120.07099 * 179.72856 * 25 5 4 43 43 H 1.08008 * 119.92460 * 180.25204 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1999 0.0000 4 6 3.5754 1.2068 -0.0005 5 6 4.2761 0.0000 -0.0005 6 6 5.7548 0.0000 -0.0017 7 7 6.5105 -1.0606 -0.0068 8 6 7.8094 -0.8681 -0.0024 9 6 8.7882 -2.0139 -0.0021 10 7 9.0155 -2.4633 1.3779 11 6 9.6932 -1.4245 2.1649 12 6 9.7731 -3.7216 1.4038 13 1 9.3078 -4.4398 0.7286 14 6 11.2126 -3.4595 0.9562 15 6 9.7759 -4.2777 2.8044 16 1 9.2661 -3.7489 3.5963 17 6 10.4299 -5.4609 3.0752 18 7 11.0511 -6.1044 2.1109 19 14 10.4339 -6.1497 4.8114 20 1 9.0369 -6.4044 5.2462 21 1 11.1996 -7.4218 4.8375 22 1 11.0678 -5.1709 5.7309 23 6 8.2096 0.4079 -0.0040 24 16 6.7772 1.4347 -0.0038 25 6 3.5754 -1.2068 -0.0052 26 6 2.1958 -1.1998 0.0007 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5137 30 1 1.6523 2.1332 -0.0004 31 1 4.1119 2.1441 -0.0010 32 1 9.7320 -1.6856 -0.4374 33 1 8.3837 -2.8375 -0.5904 34 1 10.6850 -1.2438 1.7505 35 1 9.1112 -0.5036 2.1289 36 1 9.7863 -1.7552 3.1994 37 1 11.6779 -2.7413 1.6313 38 1 11.7746 -4.3932 0.9750 39 1 11.2106 -3.0574 -0.0569 40 1 11.5109 -6.9370 2.3014 41 1 9.2340 0.7501 -0.0051 42 1 4.1119 -2.1441 -0.0096 43 1 1.6522 -2.1332 0.0012 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177363092.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:33 Heat of formation + Delta-G solvation = 73.958921 kcal Electronic energy + Delta-G solvation = -23028.593907 eV Core-core repulsion = 19779.519725 eV Total energy + Delta-G solvation = -3249.074182 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.95524 -39.12893 -36.90473 -33.71899 -32.68968 -31.18283 -30.56690 -28.52444 -27.41565 -27.17928 -25.20705 -24.32066 -23.18404 -22.90055 -21.07207 -19.44687 -18.98722 -17.80416 -16.45480 -16.11263 -15.45238 -15.37043 -15.30556 -14.60434 -14.41187 -14.11210 -13.76461 -13.69619 -13.63396 -13.38903 -13.05058 -12.65971 -12.56623 -12.41520 -12.19588 -11.79488 -11.55872 -11.22611 -11.16734 -11.09611 -10.90967 -10.75188 -10.66659 -10.44583 -10.03499 -9.83926 -9.64769 -9.51958 -9.14217 -9.08425 -8.87853 -8.35767 -8.04703 -7.14198 -5.98458 -4.01685 0.27057 1.24112 1.37897 1.49490 1.77850 3.00124 3.34945 3.38783 3.42536 3.69463 3.97653 4.44635 4.59390 4.67281 4.83128 4.98426 5.10074 5.16114 5.24047 5.31556 5.32473 5.34228 5.48528 5.56673 5.59192 5.80386 5.87432 5.95042 6.06190 6.16096 6.23882 6.33580 6.37477 6.38787 6.44542 6.66560 6.76300 6.80831 6.88491 7.10949 7.45432 7.71489 7.85490 7.94839 8.14783 8.38627 8.59817 9.03674 9.62940 11.08723 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.015715 B = 0.003021 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.337078 B = 9266.809802 C =10465.088086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.076 4.076 3 C -0.122 4.122 4 C -0.096 4.096 5 C -0.025 4.025 6 C 0.112 3.888 7 N -0.436 5.436 8 C 0.099 3.901 9 C 0.122 3.878 10 N -0.525 5.525 11 C 0.032 3.968 12 C 0.213 3.787 13 H 0.040 0.960 14 C -0.173 4.173 15 C -0.497 4.497 16 H 0.061 0.939 17 C 0.058 3.942 18 N -0.896 5.896 19 Si 0.897 3.103 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.278 1.278 23 C -0.244 4.244 24 S 0.056 5.944 25 C -0.065 4.065 26 C -0.122 4.122 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.043 0.957 33 H 0.085 0.915 34 H 0.020 0.980 35 H 0.040 0.960 36 H 0.072 0.928 37 H 0.032 0.968 38 H 0.089 0.911 39 H 0.006 0.994 40 H 0.260 0.740 41 H 0.175 0.825 42 H 0.140 0.860 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.587 16.106 -6.790 23.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.078 4.078 3 C -0.140 4.140 4 C -0.116 4.116 5 C -0.029 4.029 6 C -0.164 4.164 7 N -0.149 5.149 8 C -0.033 4.033 9 C -0.010 4.010 10 N -0.249 5.249 11 C -0.117 4.117 12 C 0.107 3.893 13 H 0.058 0.942 14 C -0.232 4.232 15 C -0.535 4.535 16 H 0.079 0.921 17 C -0.143 4.143 18 N -0.535 5.535 19 Si 0.725 3.275 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.204 1.204 23 C -0.383 4.383 24 S 0.311 5.689 25 C -0.086 4.086 26 C -0.140 4.140 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.144 0.856 31 H 0.142 0.858 32 H 0.061 0.939 33 H 0.103 0.897 34 H 0.038 0.962 35 H 0.059 0.941 36 H 0.091 0.909 37 H 0.051 0.949 38 H 0.108 0.892 39 H 0.025 0.975 40 H 0.070 0.930 41 H 0.193 0.807 42 H 0.157 0.843 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -16.253 16.434 -6.606 24.039 hybrid contribution 1.716 -0.823 0.610 1.998 sum -14.537 15.612 -5.996 22.159 Atomic orbital electron populations 1.20826 0.91039 1.02959 1.02429 1.20077 0.96241 0.93172 0.98271 1.20855 0.93424 0.97759 1.01936 1.21120 0.94465 0.96562 0.99477 1.17835 0.86962 0.94340 1.03782 1.25803 0.96900 0.89510 1.04144 1.66330 1.04482 1.30060 1.14074 1.20280 0.89855 0.94276 0.98920 1.20642 0.93383 0.93373 0.93552 1.62300 1.49943 1.04931 1.07730 1.22283 0.95538 0.94026 0.99826 1.19332 0.87675 0.84674 0.97624 0.94170 1.22426 1.02538 1.02695 0.95587 1.21050 1.32216 1.06326 0.93935 0.92060 1.24915 0.95462 0.96733 0.97184 1.69878 1.35175 1.16800 1.31674 0.86574 0.78123 0.78104 0.84675 1.20218 1.21410 1.20417 1.26791 1.02526 0.95427 1.13576 1.84602 0.99571 1.13635 1.71044 1.21372 0.93784 0.97934 0.95559 1.21049 0.93830 0.97819 1.01295 0.91001 0.91314 0.91463 0.85576 0.85841 0.93857 0.89660 0.96211 0.94083 0.90912 0.94896 0.89221 0.97470 0.92976 0.80722 0.84258 0.85380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 10.01 36.00 0.36 -0.36 16 2 C -0.08 -0.69 5.89 -104.54 -0.62 -1.31 16 3 C -0.12 -1.10 9.68 -39.64 -0.38 -1.48 16 4 C -0.10 -1.02 9.61 -39.19 -0.38 -1.40 16 5 C -0.03 -0.33 5.87 -104.98 -0.62 -0.95 16 6 C 0.11 1.68 7.35 -14.29 -0.11 1.58 16 7 N -0.44 -7.73 10.11 -7.55 -0.08 -7.81 16 8 C 0.10 1.72 5.54 -84.40 -0.47 1.26 16 9 C 0.12 2.32 4.95 -4.97 -0.02 2.30 16 10 N -0.53 -11.65 4.69 -237.73 -1.12 -12.77 16 11 C 0.03 0.64 8.56 60.06 0.51 1.16 16 12 C 0.21 5.40 2.31 -68.86 -0.16 5.24 16 13 H 0.04 1.12 7.93 -51.93 -0.41 0.71 16 14 C -0.17 -4.16 8.22 37.16 0.31 -3.86 16 15 C -0.50 -13.78 7.97 -34.44 -0.27 -14.05 16 16 H 0.06 1.72 7.10 -52.48 -0.37 1.35 16 17 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 18 N -0.90 -25.62 11.32 55.43 0.63 -24.99 16 19 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 C -0.24 -3.56 9.69 29.15 0.28 -3.28 16 24 S 0.06 0.71 22.40 -107.50 -2.41 -1.70 16 25 C -0.07 -0.83 9.68 -39.19 -0.38 -1.21 16 26 C -0.12 -1.25 9.68 -39.64 -0.38 -1.63 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 29 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 30 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 31 H 0.12 1.13 7.30 -52.48 -0.38 0.75 16 32 H 0.04 0.78 7.00 -51.93 -0.36 0.41 16 33 H 0.09 1.69 7.93 -51.93 -0.41 1.27 16 34 H 0.02 0.38 6.21 -51.93 -0.32 0.06 16 35 H 0.04 0.74 6.22 -51.93 -0.32 0.42 16 36 H 0.07 1.57 6.86 -51.93 -0.36 1.22 16 37 H 0.03 0.76 6.33 -51.93 -0.33 0.43 16 38 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 39 H 0.01 0.14 6.91 -51.93 -0.36 -0.22 16 40 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.18 2.19 8.06 -52.48 -0.42 1.77 16 42 H 0.14 1.91 7.82 -52.49 -0.41 1.50 16 43 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 LS Contribution 360.16 15.07 5.43 5.43 Total: -1.00 -30.24 360.16 -11.01 -41.24 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -6.02 Total: 0.46 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: -2.42 Total: -16.47 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: -0.56 Total: -45.57 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 0.71 SS G_CDS: -2.41 Total: -1.70 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.24 -11.01 -41.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177363092.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.202 kcal (2) G-P(sol) polarization free energy of solvation -30.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds