Wall clock time and date at job start Tue Mar 31 2020 10:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38354 * 119.85443 * 2 1 4 4 C 1.37965 * 120.14009 * 179.97438 * 3 2 1 5 5 C 1.39546 * 119.85465 * 359.97438 * 4 3 2 6 6 C 1.47874 * 120.14035 * 179.97438 * 5 4 3 7 7 N 1.30223 * 125.47450 * 180.02562 * 6 5 4 8 8 C 1.31305 * 117.04419 * 180.02562 * 7 6 5 9 9 C 1.50702 * 122.07545 * 179.97438 * 8 7 6 10 10 N 1.46895 * 109.46960 * 275.02577 * 9 8 7 11 11 C 1.46905 * 111.00088 * 293.95181 * 10 9 8 12 12 C 1.46906 * 110.99789 * 169.99981 * 10 9 8 13 13 H 1.09004 * 109.47040 * 59.99976 * 12 10 9 14 14 C 1.52993 * 109.47378 * 300.00188 * 12 10 9 15 15 C 1.50703 * 109.47109 * 179.97438 * 12 10 9 16 16 H 1.08005 * 119.99876 * 0.02562 * 15 12 10 17 17 C 1.37875 * 119.99989 * 180.02562 * 15 12 10 18 18 N 1.31518 * 119.99944 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99979 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.47454 * 59.99696 * 19 17 15 21 21 H 1.48506 * 109.47297 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46926 * 299.99488 * 19 17 15 23 23 C 1.33728 * 115.84397 * 0.25112 * 8 7 6 24 24 S 1.76176 * 125.47048 * 0.04753 * 6 5 4 25 25 C 1.39545 * 119.72009 * 0.27824 * 5 4 3 26 26 C 1.37966 * 119.85268 * 359.44640 * 25 5 4 27 27 H 1.08994 * 109.46927 * 90.00053 * 1 2 3 28 28 H 1.09001 * 109.46915 * 209.99726 * 1 2 3 29 29 H 1.09003 * 109.46812 * 329.99629 * 1 2 3 30 30 H 1.08003 * 119.92392 * 359.96039 * 3 2 1 31 31 H 1.08000 * 120.07205 * 180.02562 * 4 3 2 32 32 H 1.08998 * 109.46793 * 155.02752 * 9 8 7 33 33 H 1.09001 * 109.47154 * 35.02892 * 9 8 7 34 34 H 1.08991 * 109.47190 * 296.04768 * 11 10 9 35 35 H 1.09001 * 109.46809 * 56.05384 * 11 10 9 36 36 H 1.08997 * 109.46774 * 176.04528 * 11 10 9 37 37 H 1.08992 * 109.47715 * 179.97438 * 14 12 10 38 38 H 1.09004 * 109.46862 * 299.99897 * 14 12 10 39 39 H 1.09004 * 109.46998 * 59.99419 * 14 12 10 40 40 H 0.96997 * 119.99752 * 180.02562 * 18 17 15 41 41 H 1.07998 * 125.88590 * 179.73466 * 23 8 7 42 42 H 1.07995 * 120.07476 * 179.70054 * 25 5 4 43 43 H 1.08002 * 119.93450 * 180.27900 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1958 1.1999 0.0000 4 6 3.5754 1.2068 0.0005 5 6 4.2761 0.0000 0.0016 6 6 5.7549 0.0000 0.0016 7 7 6.5106 -1.0605 0.0021 8 6 7.8095 -0.8680 0.0025 9 6 8.7883 -2.0138 0.0037 10 7 9.0135 -2.4640 1.3837 11 6 9.6900 -1.4257 2.1725 12 6 9.7711 -3.7224 1.4099 13 1 10.7377 -3.5746 0.9283 14 6 8.9891 -4.8042 0.6624 15 6 9.9827 -4.1517 2.8389 16 1 9.5930 -3.5501 3.6468 17 6 10.6738 -5.3123 3.1149 18 7 11.1480 -6.0451 2.1311 19 14 10.9356 -5.8448 4.8862 20 1 9.6187 -6.0468 5.5421 21 1 11.7015 -7.1168 4.9127 22 1 11.6942 -4.7944 5.6118 23 6 8.2097 0.4080 0.0077 24 16 6.7772 1.4348 0.0015 25 6 3.5755 -1.2068 -0.0037 26 6 2.1958 -1.1999 0.0015 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6522 2.1332 -0.0006 31 1 4.1119 2.1441 0.0010 32 1 9.7328 -1.6852 -0.4300 33 1 8.3847 -2.8371 -0.5858 34 1 10.6824 -1.2448 1.7598 35 1 9.1079 -0.5048 2.1362 36 1 9.7815 -1.7571 3.2068 37 1 9.5513 -5.7377 0.6814 38 1 8.0224 -4.9520 1.1439 39 1 8.8363 -4.4934 -0.3712 40 1 11.6338 -6.8618 2.3252 41 1 9.2340 0.7502 0.0129 42 1 4.1119 -2.1440 -0.0078 43 1 1.6522 -2.1331 0.0019 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177363111.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:36 Heat of formation + Delta-G solvation = 74.477833 kcal Electronic energy + Delta-G solvation = -23058.724999 eV Core-core repulsion = 19809.673318 eV Total energy + Delta-G solvation = -3249.051680 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.95102 -39.12147 -36.71356 -33.71018 -32.72842 -31.18318 -30.50901 -28.96600 -27.52566 -27.33975 -24.88484 -23.96468 -23.06790 -22.86477 -21.06950 -19.58155 -19.04022 -17.80461 -16.46326 -16.25534 -15.42726 -15.33564 -15.28713 -14.60296 -14.44307 -14.02874 -13.99008 -13.64651 -13.51201 -13.44194 -13.06047 -12.58413 -12.43969 -12.39584 -12.19695 -11.85323 -11.64076 -11.38106 -11.19290 -11.08695 -10.95633 -10.70685 -10.49481 -10.10956 -10.03091 -9.84154 -9.63759 -9.51092 -9.14523 -9.09174 -8.85337 -8.40838 -8.03649 -7.17146 -5.99607 -4.03929 0.27174 1.23894 1.38124 1.49543 1.78062 3.00319 3.33497 3.37585 3.41059 3.69360 3.97668 4.42934 4.59226 4.67091 4.82934 4.98630 5.09947 5.13826 5.23889 5.30965 5.32119 5.34055 5.48398 5.56456 5.59373 5.80218 5.87409 5.95137 6.06870 6.16611 6.23234 6.33514 6.37356 6.40060 6.44608 6.76048 6.77082 6.88437 7.09555 7.16383 7.52670 7.72078 7.84356 7.95387 8.22018 8.33027 8.59656 9.01773 9.60739 11.07222 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.016481 B = 0.002984 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.494708 B = 9379.753485 C =10322.679702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.077 4.077 3 C -0.122 4.122 4 C -0.096 4.096 5 C -0.025 4.025 6 C 0.111 3.889 7 N -0.436 5.436 8 C 0.100 3.900 9 C 0.117 3.883 10 N -0.528 5.528 11 C 0.036 3.964 12 C 0.214 3.786 13 H -0.001 1.001 14 C -0.133 4.133 15 C -0.503 4.503 16 H 0.062 0.938 17 C 0.059 3.941 18 N -0.894 5.894 19 Si 0.897 3.103 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.278 1.278 23 C -0.244 4.244 24 S 0.055 5.945 25 C -0.065 4.065 26 C -0.122 4.122 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.039 0.961 33 H 0.094 0.906 34 H 0.012 0.988 35 H 0.041 0.959 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.036 0.964 39 H 0.009 0.991 40 H 0.261 0.739 41 H 0.175 0.825 42 H 0.139 0.861 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.358 15.560 -6.875 23.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.078 4.078 3 C -0.140 4.140 4 C -0.116 4.116 5 C -0.029 4.029 6 C -0.164 4.164 7 N -0.149 5.149 8 C -0.033 4.033 9 C -0.014 4.014 10 N -0.253 5.253 11 C -0.113 4.113 12 C 0.109 3.891 13 H 0.016 0.984 14 C -0.191 4.191 15 C -0.541 4.541 16 H 0.081 0.919 17 C -0.142 4.142 18 N -0.533 5.533 19 Si 0.725 3.275 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.204 1.204 23 C -0.383 4.383 24 S 0.311 5.689 25 C -0.087 4.087 26 C -0.140 4.140 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.144 0.856 31 H 0.142 0.858 32 H 0.057 0.943 33 H 0.112 0.888 34 H 0.030 0.970 35 H 0.060 0.940 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.055 0.945 39 H 0.028 0.972 40 H 0.071 0.929 41 H 0.193 0.807 42 H 0.157 0.843 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -17.012 15.881 -6.690 24.215 hybrid contribution 1.795 -0.734 0.643 2.044 sum -15.216 15.147 -6.046 22.305 Atomic orbital electron populations 1.20828 0.91039 1.02956 1.02428 1.20080 0.96240 0.93172 0.98283 1.20857 0.93424 0.97758 1.01926 1.21118 0.94464 0.96565 0.99478 1.17833 0.86964 0.94334 1.03758 1.25804 0.96899 0.89513 1.04186 1.66324 1.04469 1.30045 1.14034 1.20276 0.89872 0.94241 0.98908 1.20739 0.93454 0.93522 0.93713 1.62088 1.50544 1.04856 1.07811 1.22254 0.94962 0.93895 1.00171 1.19263 0.89711 0.83536 0.96595 0.98350 1.21854 1.00038 1.02227 0.94978 1.21101 1.34072 1.07499 0.91457 0.91947 1.24920 0.95634 0.96376 0.97259 1.69883 1.37422 1.15147 1.30843 0.86579 0.78252 0.77755 0.84924 1.20198 1.21350 1.20383 1.26803 1.02532 0.95432 1.13560 1.84602 0.99583 1.13637 1.71058 1.21368 0.93782 0.97929 0.95586 1.21047 0.93826 0.97813 1.01301 0.91003 0.91319 0.91463 0.85575 0.85841 0.94285 0.88829 0.96969 0.94004 0.90525 0.89624 0.94503 0.97249 0.92931 0.80717 0.84276 0.85388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 10.01 36.01 0.36 -0.35 16 2 C -0.08 -0.69 5.89 -104.53 -0.62 -1.31 16 3 C -0.12 -1.10 9.68 -39.64 -0.38 -1.48 16 4 C -0.10 -1.02 9.61 -39.19 -0.38 -1.40 16 5 C -0.03 -0.33 5.87 -104.98 -0.62 -0.95 16 6 C 0.11 1.68 7.35 -14.29 -0.11 1.57 16 7 N -0.44 -7.72 10.11 -7.55 -0.08 -7.80 16 8 C 0.10 1.74 5.55 -84.40 -0.47 1.27 16 9 C 0.12 2.25 5.19 -4.98 -0.03 2.22 16 10 N -0.53 -11.82 4.61 -237.73 -1.10 -12.92 16 11 C 0.04 0.73 8.98 60.07 0.54 1.27 16 12 C 0.21 5.50 2.06 -68.86 -0.14 5.36 16 13 H 0.00 -0.03 8.14 -51.93 -0.42 -0.45 16 14 C -0.13 -3.32 8.77 37.15 0.33 -2.99 16 15 C -0.50 -13.94 7.93 -34.44 -0.27 -14.21 16 16 H 0.06 1.73 6.39 -52.48 -0.34 1.40 16 17 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 18 N -0.89 -25.61 11.32 55.43 0.63 -24.98 16 19 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 C -0.24 -3.58 9.68 29.15 0.28 -3.30 16 24 S 0.06 0.71 22.40 -107.50 -2.41 -1.70 16 25 C -0.07 -0.83 9.68 -39.19 -0.38 -1.21 16 26 C -0.12 -1.25 9.68 -39.64 -0.38 -1.63 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.38 8.08 -51.93 -0.42 -0.03 16 29 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 30 H 0.13 0.82 8.06 -52.48 -0.42 0.39 16 31 H 0.12 1.13 7.30 -52.49 -0.38 0.75 16 32 H 0.04 0.71 8.07 -51.93 -0.42 0.29 16 33 H 0.09 1.87 5.83 -51.93 -0.30 1.57 16 34 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 35 H 0.04 0.76 6.21 -51.93 -0.32 0.44 16 36 H 0.08 1.67 6.23 -51.93 -0.32 1.35 16 37 H 0.09 2.31 6.07 -51.93 -0.32 2.00 16 38 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.01 0.20 6.20 -51.93 -0.32 -0.13 16 40 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.18 2.21 8.06 -52.49 -0.42 1.79 16 42 H 0.14 1.90 7.82 -52.49 -0.41 1.49 16 43 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 LS Contribution 361.87 15.07 5.45 5.45 Total: -1.00 -30.42 361.87 -10.95 -41.36 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -6.07 Total: -0.37 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -2.36 Total: -15.57 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: -0.55 Total: -45.70 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 0.71 SS G_CDS: -2.41 Total: -1.70 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.42 -10.95 -41.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177363111.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.840 kcal (2) G-P(sol) polarization free energy of solvation -30.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds