Wall clock time and date at job start Tue Mar 31 2020 10:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38354 * 119.85443 * 2 1 4 4 C 1.37965 * 120.14009 * 179.97438 * 3 2 1 5 5 C 1.39546 * 119.85465 * 359.97438 * 4 3 2 6 6 C 1.47874 * 120.14035 * 179.97438 * 5 4 3 7 7 N 1.30223 * 125.47450 * 180.02562 * 6 5 4 8 8 C 1.31305 * 117.04419 * 180.02562 * 7 6 5 9 9 C 1.50702 * 122.07545 * 179.97438 * 8 7 6 10 10 N 1.46895 * 109.46960 * 275.02577 * 9 8 7 11 11 C 1.46905 * 111.00088 * 293.95181 * 10 9 8 12 12 C 1.46906 * 110.99789 * 169.99981 * 10 9 8 13 13 H 1.09004 * 109.47040 * 59.99976 * 12 10 9 14 14 C 1.52993 * 109.47378 * 300.00188 * 12 10 9 15 15 C 1.50703 * 109.47109 * 179.97438 * 12 10 9 16 16 H 1.08005 * 119.99876 * 0.02562 * 15 12 10 17 17 C 1.37875 * 119.99989 * 180.02562 * 15 12 10 18 18 N 1.31518 * 119.99944 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99979 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.47454 * 59.99696 * 19 17 15 21 21 H 1.48506 * 109.47297 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46926 * 299.99488 * 19 17 15 23 23 C 1.33728 * 115.84397 * 0.25112 * 8 7 6 24 24 S 1.76176 * 125.47048 * 0.04753 * 6 5 4 25 25 C 1.39545 * 119.72009 * 0.27824 * 5 4 3 26 26 C 1.37966 * 119.85268 * 359.44640 * 25 5 4 27 27 H 1.08994 * 109.46927 * 90.00053 * 1 2 3 28 28 H 1.09001 * 109.46915 * 209.99726 * 1 2 3 29 29 H 1.09003 * 109.46812 * 329.99629 * 1 2 3 30 30 H 1.08003 * 119.92392 * 359.96039 * 3 2 1 31 31 H 1.08000 * 120.07205 * 180.02562 * 4 3 2 32 32 H 1.08998 * 109.46793 * 155.02752 * 9 8 7 33 33 H 1.09001 * 109.47154 * 35.02892 * 9 8 7 34 34 H 1.08991 * 109.47190 * 296.04768 * 11 10 9 35 35 H 1.09001 * 109.46809 * 56.05384 * 11 10 9 36 36 H 1.08997 * 109.46774 * 176.04528 * 11 10 9 37 37 H 1.08992 * 109.47715 * 179.97438 * 14 12 10 38 38 H 1.09004 * 109.46862 * 299.99897 * 14 12 10 39 39 H 1.09004 * 109.46998 * 59.99419 * 14 12 10 40 40 H 0.96997 * 119.99752 * 180.02562 * 18 17 15 41 41 H 1.07998 * 125.88590 * 179.73466 * 23 8 7 42 42 H 1.07995 * 120.07476 * 179.70054 * 25 5 4 43 43 H 1.08002 * 119.93450 * 180.27900 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1958 1.1999 0.0000 4 6 3.5754 1.2068 0.0005 5 6 4.2761 0.0000 0.0016 6 6 5.7549 0.0000 0.0016 7 7 6.5106 -1.0605 0.0021 8 6 7.8095 -0.8680 0.0025 9 6 8.7883 -2.0138 0.0037 10 7 9.0135 -2.4640 1.3837 11 6 9.6900 -1.4257 2.1725 12 6 9.7711 -3.7224 1.4099 13 1 10.7377 -3.5746 0.9283 14 6 8.9891 -4.8042 0.6624 15 6 9.9827 -4.1517 2.8389 16 1 9.5930 -3.5501 3.6468 17 6 10.6738 -5.3123 3.1149 18 7 11.1480 -6.0451 2.1311 19 14 10.9356 -5.8448 4.8862 20 1 9.6187 -6.0468 5.5421 21 1 11.7015 -7.1168 4.9127 22 1 11.6942 -4.7944 5.6118 23 6 8.2097 0.4080 0.0077 24 16 6.7772 1.4348 0.0015 25 6 3.5755 -1.2068 -0.0037 26 6 2.1958 -1.1999 0.0015 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6522 2.1332 -0.0006 31 1 4.1119 2.1441 0.0010 32 1 9.7328 -1.6852 -0.4300 33 1 8.3847 -2.8371 -0.5858 34 1 10.6824 -1.2448 1.7598 35 1 9.1079 -0.5048 2.1362 36 1 9.7815 -1.7571 3.2068 37 1 9.5513 -5.7377 0.6814 38 1 8.0224 -4.9520 1.1439 39 1 8.8363 -4.4934 -0.3712 40 1 11.6338 -6.8618 2.3252 41 1 9.2340 0.7502 0.0129 42 1 4.1119 -2.1440 -0.0078 43 1 1.6522 -2.1331 0.0019 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177363111.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:35 Heat of formation + Delta-G solvation = 57.408809 kcal Electronic energy + Delta-G solvation = -23059.465167 eV Core-core repulsion = 19809.673318 eV Total energy + Delta-G solvation = -3249.791849 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.130 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.07000 -40.05929 -38.43327 -35.03995 -34.24959 -32.02602 -31.83240 -30.73352 -28.97842 -28.27120 -26.82947 -25.37273 -24.38807 -23.75432 -22.09417 -21.34461 -20.21816 -18.94481 -18.32840 -17.50688 -17.10918 -16.22525 -16.16433 -16.09847 -15.77253 -15.72180 -15.08186 -14.86796 -14.46333 -14.41869 -14.29056 -14.12091 -13.96954 -13.53762 -13.05731 -12.99702 -12.96273 -12.93377 -12.78965 -12.61796 -12.35793 -12.21368 -12.10615 -11.99898 -11.93612 -11.62455 -10.94863 -10.68411 -10.64932 -10.53030 -10.11286 -9.93435 -9.06177 -8.92480 -8.12399 -6.24327 -0.74140 0.30374 0.43926 0.53856 0.64019 1.40966 1.43407 1.50766 1.82923 2.41811 2.83705 2.93635 3.15569 3.46922 3.78753 3.92048 4.03952 4.06061 4.18455 4.28332 4.41483 4.43825 4.48031 4.59157 4.64775 4.69952 4.78879 4.87347 4.90486 4.91443 4.98677 5.01753 5.06940 5.14005 5.21792 5.28748 5.42936 5.46386 5.50641 5.64790 5.69807 5.74552 5.99758 6.22495 6.35634 6.66139 6.82370 6.88819 7.44373 8.93530 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.016481 B = 0.002984 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.494708 B = 9379.753485 C =10322.679702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.071 4.071 3 C -0.119 4.119 4 C -0.095 4.095 5 C -0.054 4.054 6 C 0.099 3.901 7 N -0.479 5.479 8 C 0.075 3.925 9 C 0.122 3.878 10 N -0.540 5.540 11 C 0.043 3.957 12 C 0.220 3.780 13 H -0.030 1.030 14 C -0.120 4.120 15 C -0.521 4.521 16 H 0.057 0.943 17 C 0.013 3.987 18 N -0.919 5.919 19 Si 0.960 3.040 20 H -0.274 1.274 21 H -0.282 1.282 22 H -0.270 1.270 23 C -0.247 4.247 24 S 0.128 5.872 25 C -0.086 4.086 26 C -0.128 4.128 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.159 0.841 31 H 0.139 0.861 32 H 0.049 0.951 33 H 0.077 0.923 34 H 0.016 0.984 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.025 0.975 39 H 0.029 0.971 40 H 0.263 0.737 41 H 0.195 0.805 42 H 0.115 0.885 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.293 18.173 -6.474 26.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.072 4.072 3 C -0.136 4.136 4 C -0.116 4.116 5 C -0.058 4.058 6 C -0.176 4.176 7 N -0.193 5.193 8 C -0.058 4.058 9 C -0.008 4.008 10 N -0.265 5.265 11 C -0.105 4.105 12 C 0.114 3.886 13 H -0.013 1.013 14 C -0.178 4.178 15 C -0.559 4.559 16 H 0.075 0.925 17 C -0.186 4.186 18 N -0.559 5.559 19 Si 0.786 3.214 20 H -0.200 1.200 21 H -0.207 1.207 22 H -0.195 1.195 23 C -0.387 4.387 24 S 0.385 5.615 25 C -0.108 4.108 26 C -0.146 4.146 27 H 0.102 0.898 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.177 0.823 31 H 0.157 0.843 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.034 0.966 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.044 0.956 39 H 0.047 0.953 40 H 0.072 0.928 41 H 0.212 0.788 42 H 0.133 0.867 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -18.955 18.522 -6.295 27.239 hybrid contribution 2.248 -1.435 0.453 2.705 sum -16.707 17.086 -5.843 24.601 Atomic orbital electron populations 1.20905 0.88621 1.04090 1.03527 1.20488 0.97973 0.92582 0.96197 1.21270 0.92880 0.99130 1.00356 1.21331 0.95342 0.96039 0.98847 1.18015 0.86281 0.95487 1.06044 1.26214 0.97960 0.90246 1.03168 1.66266 1.04883 1.32059 1.16070 1.19962 0.89715 0.94408 1.01669 1.20611 0.94514 0.94098 0.91621 1.61984 1.49971 1.04454 1.10125 1.22178 0.95480 0.94103 0.98739 1.19039 0.88775 0.85376 0.95449 1.01274 1.21660 0.98773 1.01195 0.96143 1.21361 1.34360 1.07849 0.92327 0.92516 1.25701 0.95295 0.96348 1.01272 1.70007 1.37784 1.15400 1.32712 0.85579 0.78194 0.77558 0.80098 1.19961 1.20725 1.19538 1.27074 1.04512 0.95189 1.11896 1.84248 0.96912 1.10911 1.69407 1.21321 0.94962 0.97182 0.97302 1.21263 0.92906 0.99372 1.01100 0.89750 0.90769 0.89836 0.82300 0.84331 0.93303 0.90444 0.96571 0.91680 0.92339 0.91811 0.95597 0.95265 0.92833 0.78770 0.86701 0.83973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 10.01 71.24 0.71 -0.31 16 2 C -0.07 -1.11 5.89 -19.81 -0.12 -1.22 16 3 C -0.12 -1.77 9.68 22.23 0.22 -1.55 16 4 C -0.10 -1.82 9.61 22.52 0.22 -1.61 16 5 C -0.05 -1.41 5.87 -20.10 -0.12 -1.53 16 6 C 0.10 2.96 7.35 87.49 0.64 3.60 16 7 N -0.48 -17.41 10.11 -177.79 -1.80 -19.21 16 8 C 0.08 2.63 5.55 41.61 0.23 2.86 16 9 C 0.12 4.83 5.19 85.56 0.44 5.27 16 10 N -0.54 -24.84 4.61 -906.04 -4.18 -29.02 16 11 C 0.04 1.78 8.98 127.69 1.15 2.92 16 12 C 0.22 11.71 2.06 44.17 0.09 11.80 16 13 H -0.03 -1.75 8.14 -2.38 -0.02 -1.77 16 14 C -0.12 -6.22 8.77 71.98 0.63 -5.59 16 15 C -0.52 -29.61 7.93 25.60 0.20 -29.41 16 16 H 0.06 3.22 6.39 -2.91 -0.02 3.21 16 17 C 0.01 0.71 5.30 84.65 0.45 1.16 16 18 N -0.92 -53.85 11.32 21.45 0.24 -53.61 16 19 Si 0.96 44.63 29.54 68.60 2.03 46.66 16 20 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 21 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 23 C -0.25 -6.91 9.68 66.80 0.65 -6.26 16 24 S 0.13 3.01 22.40 -56.49 -1.27 1.74 16 25 C -0.09 -2.25 9.68 22.52 0.22 -2.03 16 26 C -0.13 -2.53 9.68 22.23 0.22 -2.32 16 27 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.07 0.61 8.08 -2.39 -0.02 0.59 16 29 H 0.08 0.51 8.08 -2.39 -0.02 0.49 16 30 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 31 H 0.14 2.12 7.30 -2.91 -0.02 2.10 16 32 H 0.05 1.80 8.07 -2.39 -0.02 1.78 16 33 H 0.08 3.24 5.83 -2.39 -0.01 3.23 16 34 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.06 2.33 6.21 -2.39 -0.01 2.32 16 36 H 0.06 2.58 6.23 -2.39 -0.01 2.57 16 37 H 0.06 3.58 6.07 -2.39 -0.01 3.57 16 38 H 0.02 1.34 8.14 -2.38 -0.02 1.32 16 39 H 0.03 1.35 6.20 -2.39 -0.01 1.33 16 40 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 41 H 0.20 4.49 8.06 -2.91 -0.02 4.46 16 42 H 0.11 3.46 7.82 -2.91 -0.02 3.43 16 43 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -67.67 361.87 1.86 -65.81 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 1.01 Total: 11.83 kcal Atomic # 6 Polarization: -30.04 SS G_CDS: 5.83 Total: -24.21 kcal Atomic # 7 Polarization: -96.10 SS G_CDS: -5.74 Total: -101.84 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Atomic # 16 Polarization: 3.01 SS G_CDS: -1.27 Total: 1.74 kcal Total: -67.67 1.86 -65.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177363111.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.221 kcal (2) G-P(sol) polarization free energy of solvation -67.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds